CHEMMEDCHEM
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1
solid (0.239 g, 50%): H NMR ([D6]DMSO): d=9.79 (1H, s, OH), 9.69
added, and the red reaction mixture was stirred for 24 h at RT.
After the addition of ice (300 g), the solution was adjusted to pH 5
with 1m HCl, and the light yellow solution was extracted with
EtOAc (3ꢁ80 mL). The pooled extracts were washed with 0.5m
HCl, H2O and brine, dried over Na2SO4, filtered and concentrated in
vacuo, leaving the crude product as an oil (0.441 g). Purification by
gradient elution on a column of silica gel using CH2Cl2/MeOH
(10%!15%!20% v/v) as eluent afforded compound 15b as
(1H, s, OH), 8.67 (1H, s, triazole H), 7.82 (2H, d, J=8.5 Hz, Ar-H),
7.74 (2H, d, J=8.5 Hz, Ar-H), 7.38 (1H, d, J=8.8 Hz), 7.36 (1H, d,
J=2.1 Hz), 7.16 (1H, d, J=2.1 Hz), 7.12 (2H, d, J=8.6 Hz), 6.88 (2H,
dd, J1 =8.8 Hz, J2 =2.2 Hz), 6.64 (2H, d, J=8.6 Hz), 4.40 (2H, t, J=
6.6 Hz, CH2), 4.02 (2H, q, J=7.2 Hz, CH2), 2.33 (2H, t, J=6.6 Hz,
CH2), 1.86 (2H, m, CH2), 1.52 (2H, m, CH2), 1.15 ppm (3H, t, J=
7.2 Hz, CH3); 13C NMR ([D6]DMSO): d=173.00, 158.64, 155.93,
145.55, 139.78, 135.81, 132.59, 130.67, 130.46, 129.69, 125.45,
124.14, 123.93, 123.15, 116.10, 115.76, 107.58, 60.20, 49.71, 33.16,
29.32, 21.80, 14.52 ppm.
1
a yellow oil that set up as crystals (0.371 g, 68%): H NMR (CDCl3):
d=10.33 (1H, s, OH), 9.81 (1H, s, OH), 9.72 (1H, s, NH), 8.67 (1H, s,
Ar-H), 7.83 (2H, d, J=8.4 Hz), 7.75 (2H, d, J=8.4 Hz, Ar-H), 7.39
(1H, d, J=8.8 Hz), 7.37 (1H, d, J=2.1 Hz), 7.17 (2H, d, J=8.6 Hz),
6.89 (1H, dd, J1 =8.8 Hz, J2 =2.2 Hz), 6.66 (2H, d, J=8.6 Hz), 4.38
(2H, t, J=7.2 Hz), 4.10 (2H, q, J=5.2 Hz), 1.94 (2H, t, J=7.3 Hz,
CH2), 1.85 (2H, m, CH2), 1.53 (2H, m, CH2), 1.23 ppm (2H, m, CH2);
13C NMR (CDCl3): d=193.56, 169.37, 158.37, 155.94, 145.54, 142.73,
139.79, 136.46, 135.85, 132.60, 130.67, 129.69, 125.42, 124.15,
123.93, 123.07, 116.10, 115.76, 107.58, 49.93, 49.04, 32.45, 29.69,
25.84, 24.90 ppm. HRMS-ESI: m/z [M+H]+ calcd for C29H26N4O5S:
543.1702, found: 543.1718.
Methyl
6-(4-(4-(6-hydroxy-2-(4-hydroxyphenyl)benzo[b]thio-
phene-3-carbonyl)phenyl)-1H-1,2,3-triazol-1-yl)hexanoate (14b):
A solution of alkyne 13b (0.549 g, 1.61 mmol), methyl 6-azidohexa-
noate (0.493 g, 2.88 mmol), CuSO4 (0.044 g, 0.28 mmol) and ascor-
bic acid (0.181 g, 1.03 mmol) in THF (6 mL) and H2O (1 mL) was
stirred at RT for 24 h. After the addition of water (10 mL), the solu-
tion was extracted with EtOAc (3ꢁ8 mL). The organic solutions
were combined, washed with H2O, dried on Na2SO4, filtered and
concentrated in vacuo. After column chromatography (6:4 v/v
hexane/EtOAc), ester 14b was obtained as a yellow gum (0.623 g,
1
76%): H NMR (CDCl3): d=9.80 (1H, s, OH), 9.70 (1H, s, OH), 8.67
Biology
(1H, s, NH), 7.82 (2H, d, J=8.5 Hz), 7.75 (2H, d, J=8.5 Hz, Ar-H),
7.39 (1H, d, J=8.8 Hz), 7.37 (1H, d, J=2.1 Hz), 7.17 (2H, d, J=
8.6 Hz), 6.89 (1H, dd, J1 =8.8 Hz, J2 =2.2 Hz), 6.66 (2H, d, J=8.6 Hz),
4.38 (2H, t, J=7.2 Hz), 4.10 (2H, q, J=5.2 Hz), 1.94 (2H, t, J=
7.3 Hz, CH2), 1.85 (2H, m, CH2), 1.53 (2H, m, CH2), 1.23 ppm (2H, m,
CH2); 13C NMR (CDCl3): d=193.56, 169.37, 158.37, 155.94, 145.54,
142.73, 139.79, 136.46, 135.85, 132.60, 130.67, 129.69, 125.42,
124.15, 123.93, 123.07, 116.10, 115.76, 107.58, 49.93, 49.04, 32.45,
29.69, 25.84, 24.90 ppm.
Cell lines and cell culture conditions: MCF-7, BT20 and MDA-MB-231
cells were obtained from American Type Culture Collection (Mana-
ssas, VA, USA). MCF-7 were cultured in phenol red containing RPMI
1640 media supplemented with 10% fetal bovine serum, 1% gluta-
max, 1% non-essential amino acids, insulin (6 mgmLꢀ1), 1% antibi-
otic-antimycotic and 5% CO2 at 378C. Treatment media was pre-
pared by supplementing phenol red-free RPMI 1640 media with
charcoal-dextran treated fetal bovine serum whereas other supple-
ments remained the same. BT20 and MDA-MB-231 cells were cul-
tured in phenol red-containing DMEM media supplemented with
10% fetal bovine serum and 1% penicillin-streptomycin and were
maintained in 5% CO2 at 378C. Treatment media for both cell lines
was prepared by supplementing phenol red-free DMEM media
with 10% charcoal-dextran treated fetal bovine serum and 1%
penicillin-streptomycin.
N-Hydroxy-5-(4-(4-(6-hydroxy-2-(4-hydroxyphenyl)benzo[b]thio-
phene-3-carbonyl)phenyl)-1H-1,2,3-triazol-1-yl)pentanamide
(15a):[29] A solution of hydroxylamine freebase in anhyd MeOH was
generated from 85% KOH (4.90 g, 74.2 mmol) and NH2OH·HCl
(5.16 g, 74.2 mmol) in MeOH (100 mL), and the solution was fil-
tered free of the formed KCl.
A solution of 14a (0.142 g,
0.26 mmol) was added, and the red reaction mixture was stirred
for 24 h at RT. The solution was poured into ice water (300 mL),
the solution was adjusted to pH 2 with 1m HCl, and the light
yellow solution was extracted with EtOAc (3ꢁ80 mL). The pooled
extracts were washed with brine then dried over Na2SO4, filtered
and concentrated in vacuo. The crude product was purified by gra-
dient elution on a column of silica gel using CH2Cl2/MeOH (10%!
15%!20% v/v) as eluent, affording compound 15a as bright
canary yellow crystals (0.099 g, 72%): 1H NMR (CDCl3): d=10.37
(1H, s, OH), 9.82 (1H, s, OH), 9.75 (1H, b, NH), 8.67 (1H, s, Ar-H),
7.83 (2H, d, J=8.5 Hz), 7.75 (2H, d, J=8.5 Hz, Ar-H), 7.39 (1H, d,
J=8.8 Hz), 7.36 (1H, d, J=2.1 Hz), 7.17 (2H, d, J=8.6 Hz), 6.89 (1H,
dd, J1 =8.7 Hz, J2 =2.2 Hz), 6.65 (2H, d, J=8.6 Hz), 4.39 (2H, t, J=
7.2 Hz), 4.10 (2H, d, J=5.2 Hz), 1.99 (2H, t, J=7.3 Hz, CH2), 1.83
(2H, m, CH2), 1.48 ppm (2H, m, CH2); 13C NMR (CDCl3): d=193.55,
169.37, 158.38, 155.95, 145.53, 142.75, 139.78, 136.47, 135.82,
132.59, 130.67, 129.68, 125.42, 124.14, 123.92, 123.14, 116.10,
115.77, 107.58, 49.76, 49.03, 31.98, 29.57, 22.52 ppm; HRMS-ESI:
m/z [M+H]+ calcd for C28H24N4O5S: 529.1546, found: 529.1555.
Cytotoxicity assay: The CellTiter 96 AQueous One Solution Cell Prolif-
eration Assay (MTS) was purchased from Promega. BT20 and MDA-
MB-231 cells were plated at a density of 5ꢁ103 cells/well in 96-well
plates overnight. Cells were treated with test compounds on the
next day, and cell viability was measured at 24, 48 and 72 h using
the MTS reagent (Promega) according to the manufacturer’s in-
structions. MCF-7 cells were plated at a density of 1ꢁ104 cells/well
in 96-well plates and the above procedure was repeated. Absorb-
ance at 490 nm was measured using the Synergy H4 Hybrid Multi-
Mode Microplate Reader (Bio-Tek). Data is representative of three
individual experiments.
HDAC activity assay: Carried out as described in published detailed
experimental procedures using recombinant HDAC1, 2, 3 and
8.[29,39] Stock solutions of human recombinant HDAC1, 2 and 3 (BPS
Bioscience) and HDAC8 (purified from E. coli) were prepared in
assay buffer 1 (25 mm Tris-HCl, pH 8.0, 137 mm NaCl, 2.7 mm KCl,
1 mm MgCl2, and 1 mgmLꢀ1 BSA). Serial dilutions of the probes
were made in assay buffer 2 (25 mm Tris-HCl, pH 8.0, 137 mm NaCl,
2.7 mm KCl, 1 mm MgCl2). Enzyme was added to the probes in 96-
well opaque half-area microplates (Corning) and preincubated for
different preincubation times. It was observed that the Z-factor for
the assays remained above 0.7 up to 3 h for HDAC1, 3 and 8 and
up to 24 h for HDAC2, hence these preincubation times were
chosen for the assays. After preincubation, HDAC fluorescent sub-
N-Hydroxy-6-(4-(4-(6-hydroxy-2-(4-hydroxyphenyl)benzo[b]thio-
phene-3-carbonyl)phenyl)-1H-1,2,3-triazol-1-yl)hexanamide
(15b): A solution of hydroxylamine in anhyd MeOH was generated
from 85% KOH (5.96 g, 90.3 mmol) and NH2OH·HCl (5.91 g,
85.0 mmol) in MeOH (150 mL), and the solution was filtered free of
the formed KCl. A solution of ester 14b (0.545 g, 1.01 mmol) was
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