Full Papers
Kasperkiewicz et al.[7] reported non-natural peptidic sub-
strates of HNE as sensitive ABPs, revealing that the level of
active HNE during the process of neutrophil extracellular trap
formation was not as high as anticipated, highlighting the utili-
ty of this approach in dissecting biological events. As the use
of peptidic substrates can raise some challenges, herein we
present the use of small-molecular scaffolds as ABPs that pro-
vide both ease of handling and high specificity toward the
target protein. A 1,2,3-triazole-based oxo-b-lactam library was
synthesized to rapidly explore the impact of the triazole
moiety on HNE inhibitory potency. This information was then
extended to the design of ABPs that were validated for HNE
activity. Neutrophil internalization and selectivity in the pres-
ence of a complex proteome was observed for an ABP contain-
ing a nitrobenzoxadiazole (NBD) tag. Moreover, a bio-orthogo-
nal probing methodology is envisaged, as the starting oxo-b-
lactam alkyne was also shown to inhibit HNE.
of LE as result of fragment growth, all compounds 2 displayed
LE values >0.3, thus meeting the requirements of an early
lead. Furthermore, LLE values remained in the range of 5–6, re-
flecting the fact that lipophilicity was kept fairly constant
during fragment growth, and suggesting that that the 1,2,3-tri-
azole moiety may lead to additional interactions with the
enzyme active site.
To gain molecular insight on the preferred interactions of
the synthesized compounds and the active site of HNE, molec-
ular docking studies were performed using HNE coordinates
from PDB ID: 3Q77.[18] All the compounds showed a correct
pose for the oxo-b-lactam in the S1 pocket, promoting Ser195
nucleophilic attack in agreement with high activities obtained
for the synthesized library (further details and molecular poses
are given in the Supporting Information). We were unable to
co-crystallize a triazole-based oxo-b-lactam either with HNE or
porcine pancreatic elastase (PPE), but we have crystallized[19]
and determined the X-ray structure of PPE in complex with the
closely related diethyl N-(methyl)pyridinyl-substituted oxo-b-
lactam, at 1.8 ꢃ resolution (Figure 2A, details of structure de-
termination are given in the Supporting Information, and the
atomic coordinates and structure factor amplitudes have been
deposited in the RCSB Protein Data Bank (PDB) as PDB ID:
4YM9). This structure confirmed the expected covalent mecha-
nism of action, involving ring opening and the suitable accom-
modation of the diethyl moiety in the S1 pocket. Additional p–
p stacking with His57 is likely to contribute to the stability of
the complex, decreasing the rate of hydrolysis and promoting
strong inhibition.
Results and Discussion
1,2,3-Triazole-based 4-oxo-b-lactams are potent HNE
inhibitors
Previous 4-oxo-b-lactam structure–activity relationship (SAR)
studies against HNE showed that diethyl substitution at C3 is
preferred for optimal S1 subsite recognition, leading to im-
proved inhibitory activity and
target selectivity. Furthermore, the
N-substitution pattern can be ex-
plored as an anchor to probe
the interaction with Sn subsites
(Figure 1).[11,12]
Design and synthesis of oxo-b-lactam-based probes
Click chemistry is as a powerful
The encouraging results obtained with 1,2,3-triazole-substitut-
ed 4-oxo-b-lactams as HNE inhibitors led us to design a group
of ABPs in which NBD, fluorescein, and biotin moieties were
used as reporter tags and attached to the 4-oxo-b-lactam war-
head via a 1,2,3-triazole linker (3–5, Figure 3). Docking studies
revealed that the tag did not affect the positioning of the oxo-
b-lactam ring inside the active site of HNE when compared
with smaller triazole analogues (Figure S2, Supporting Informa-
tion). Moreover, covalent docking performed using the coordi-
nates from the PPE–oxo-b-lactam complex showed that the
acyl-enzyme formed after Ser195 attack presents additional p–
p stacking between the triazole moiety and His57 and cation–
p stacking with the PPE backbone Arg61 residue (Figure 2B,
ABP 3 example), that may increase the complex lifetime
toward feasible ABP profiling.
and versatile synthetic tool for
drug development and chemical
biology applications.[13,14] More
Figure 1. Schematic represen-
tation of the spatial arrange-
ment of oxo-b-lactam sub-
stituents in the active site of
HNE.
specifically,
copper-catalyzed
alkyne–azide 1,3-dipolar cycloaddi-
tion (CuAAC) has been explored as
an efficient approach for the gen-
eration of compound libraries,
where the formed 1,2,3-triazole moiety is more than a passive
linker, as it presents favorable physicochemical properties.[15]
We first prepared the 4-oxo-b-lactam alkyne 1 (Table 1) as the
starting material for CuAAC chemistry. Remarkably, compound
1 showed to be a potent inhibitor of HNE, with an IC50 value
of 82 nm (Table 1), while displaying a fragment-like nature
[Mr =179.22 Da, ligand efficiency (LE)=0.81, lipophilic ligand
efficiency (LLE)=5.53].[16,17]
The synthetic strategy was first to bind a tag moiety with
a linker containing an appropriate handle for further reaction
with the oxo-b-lactam alkyne 1 using CuAAC, yielding the
NBD-, fluorescein-, and biotin-tagged probes 3–5 (Figure 3).
To validate compounds 3–5 as potential ABPs, their activity
was measured against HNE, showing conserved inhibitory ac-
tivity as anticipated, with remarkable IC50 values in the nano-
molar range (56–118 nm), deeming the structures as potent
HNE inhibitors and suitable candidates for an ABP. The NBD-
based probe 3 displayed the best binding properties (LE=
With this encouraging result in hand, we then synthesized
a small set of 1,2,3-triazole-based 4-oxo-b-lactam derivatives,
2a–l (Table 1) by reacting alkyne 1 with the appropriate azides.
Compounds 2a–l revealed to be very potent HNE inhibitors,
with IC50 values ranging from 14 to 103 nm (Table 1). These
values compare favorably with that determined for ONO-5046
(15 nm), the only HNE inhibitor in clinical use and included as
a positive control in our assay. Although there was some loss
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ChemMedChem 2016, 11, 1 – 7
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