Novel Pyrazinoic Acid C-Nucleosides
J ournal of Medicinal Chemistry, 1998, Vol. 41, No. 8 1239
University of Michigan Chemistry Department. Elemental
analyses were performed by MHW Laboratories, Phoenix, AZ,
or by The University of Michigan Chemistry Department. The
presence of solvent as indicated by analysis was always
was evaporated in vacuo. The compound (absorbed on silica
gel) was subjected to column chromatography (SiO2, 40 × 220
mm, 7% methanol/chloroform, Rf ) 0.38) to give, following
solvent evaporation, 4 (139 mg, 89%) as a white solid. An
analytical sample was crystallized from acetone/petroleum
ether to afford a flocculent white solid: mp 122.5-123 °C; 1H
NMR (360 MHz, DMSO-d6) δ 5.32 (d, 1, J ) 5.3 Hz, D2O
exchangeable), 5.14 (d, 1, J ) 3.9 Hz), 5.03 (d, 1, J ) 6.0 Hz,
D2O exchangeable), 4.49 (dd, 1, J ) 4.5, 7.0 Hz, D2O exchange-
able), 4.41 (q, 2, J ) 7.1 Hz), 4.23 (dd, 1, J ) 4.8, 9.1 Hz), 3.98
(dd, 1, J ) 5.9, 10.9 Hz), 3.91 (dd, 1, J ) 4.5, 9.4 Hz), 3.61 (m,
1), 3.51 (m, 1), 1.34 (t, 3, J ) 7.1 Hz); 13C NMR (90 MHz,
DMSO-d6) δ 162.3, 151.1, 147.2, 143.3, 140.8, 84.8, 80.7, 74.6,
70.9, 62.5, 61.8, 13.8. Anal. (C12H14Cl2N2O6) C,H,N.
Eth yl 5-Am in o-3-ch lor o-6-(â-D-r ibofu r a n osyl)p yr a zin e-
2-ca r boxyla te (5). Con d ition A: A 10-mL pressure tube was
charged with 4 (176 mg, 0.5 mmol). To this tube was added a
0.5 M solution of ammonia in 1,4-dioxane (Aldrich; 2.2 mL,
1.1 mmol), the tube was sealed, and the reaction continued at
40 °C for 42 h. At this point, TLC indicated that all starting
material had been consumed. A minimal amount of silica gel
was added, and the solvent was evaporated in vacuo. The
compound (absorbed on silica gel) was subjected to column
chromatography (SiO2, 20 × 180 mm, 10% methanol/chloro-
form, Rf ) 0.38) to give, following solvent evaporation, 5 (98
mg, 59%) as a white solid: mp 164-166 °C; 1H NMR (360
MHz, DMSO-d6) δ 7.65 (bs, 2, D2O exchangeable), 5.36 (pt, 1,
J ) 4.6 Hz, D2O exchangeable), 5.12 (d, 1, J ) 6.5 Hz, D2O
exchangeable), 4.99 (d, 1, J ) 4.8 Hz, D2O exchangeable), 4.72
(d, 1, J ) 7.6 Hz), 4.26 (m, 3), 4.01 (dd, 1, J ) 4.7, 8.4 Hz),
3.92 (m, 1), 3.61 (m, 2), 1.30 (t, 3, J ) 7.1 Hz); 13C NMR (90
MHz, DMSO-d6) δ 163.2, 153.6, 145.6, 136.3, 126.4, 86.0, 83.7,
71.8, 71.4, 61.0, 60.8, 14.1; HRMS calcd for C12H16ClN3O6
333.0728, found 333.0733. Anal. (C12H16ClN3O6) C,H,N.
1
confirmed by H NMR spectroscopy.
3,5-Dich lor o-2-(â-D-r ibofu r an osyl)pyr azin e (2). A flame-
dried, evacuated, 100-mL round-bottom flask was charged,
under argon, with 114b (550 mg, 1.0 mmol). This was dissolved
in dry dichloromethane (30 mL) and cooled to -70 °C. To this
solution was added boron trichloride (1.0 M solution in
dichloromethane, 10.0 mL, 10.0 mmol) dropwise, and stirring
was continued at -70 °C for 120 min. The reaction was then
warmed to room temperature and stirred for an additional 60
min. The excess boron trichloride was then quenched with
methanol/dichloromethane (1:1, 20 mL), and the solution was
adjusted to pH 7 with 2 N aqueous ammonium hydroxide. A
minimal amount of silica gel was added and the solvent
evaporated. The compound (absorbed on silica gel) was
subjected to column chromatography (SiO2, 40 × 150 mm, 5%
methanol/chloroform, Rf ) 0.25) to give, following solvent
evaporation, 2 (240 mg, 85%) as a white solid: mp 132-132.5
°C; 1H NMR (360 MHz, DMSO-d6) δ 8.87 (s, 1), 5.19 (d, 1, J )
5.7 Hz), 5.10 (d, 1, J ) 5.1 Hz, D2O exchangeable), 5.03 (d, 1,
J ) 5.6 Hz, D2O exchangeable), 4.65 (pt, 1, J ) 5.3, 6.1 Hz,
D2O exchangeable), 4.30 (dd, 1, J ) 5.3, 10.6 Hz), 3.99 (dd, 1,
J ) 5.3, 10.5 Hz), 3.88 (dd, 1, J ) 4.9, 9.6 Hz), 3.53 (m, 1),
3.43 (m, 1); 13C NMR (90 MHz, DMSO-d6) δ 150.8, 146.2, 145.5,
142.8, 85.3, 80.2, 74.3, 71.4, 61.6. Anal. (C9H10Cl2N2O4)
C,H,N.
Eth yl 3,5-Dich lor o-6-(2,3,5-tr i-O-ben zyl-â-D-r ibofu r a n -
osyl)p yr a zin e-2-ca r boxyla te (3). A flame-dried, evacuated,
3-neck, 250-mL round-bottom flask equipped with an addition
funnel was charged, under argon, with dry tetrahydrofuran
(60 mL) and cooled to -70 °C. To this flask was added
n-butyllithium (2.5 M solution in hexane, 3.2 mL, 8.0 mmol)
followed by 2,2,6,6-tetramethylpiperidine (1.52 mL, 9.0 mmol),
and the solution was warmed and allowed to stir at 0 °C for
60 min. After cooling to -94 °C, a solution of 114b (4.03 g, 7.3
mmol in 40 mL of dry tetrahydrofuran) was added dropwise
(ca. 20 min). The lithiation was allowed to take place at -94
°C for 120 min, at which time ethyl cyanoformate (3.61 mL,
37.0 mmol) was added neat in one portion. The condensation
was complete in 60 min (as determined by TLC), at which time
the reaction was quenched with 25 mL of water, warmed to
room temperature, and diluted with ethyl acetate to a total
volume of 200 mL. The organic layer was isolated, dried over
magnesium sulfate, and filtered, and the solvent was evapo-
rated in vacuo. The resultant orange oil was subjected to
column chromatography (SiO2, 50 × 220 mm, 15% ethyl
acetate/hexanes, Rf ) 0.38) to give, following solvent evapora-
tion, 3 (3.56 g, 78%) as a colorless oil: 1H NMR (360 MHz,
CDCl3) δ 7.35-7.23 (m, 15), 5.47 (d, 1, J ) 5.7 Hz), 4.67-4.37
(m, 10), 4.12 (pt, 1, J ) 4.8, 4.9 Hz), 3.59 (dd, 2, J ) 3.5, 4.6
Hz), 1.34 (t, 3, J ) 7.1 Hz); 13C NMR (90 MHz, CDCl3) δ 162.7,
149.6, 148.7, 145.0, 141.7, 138.3, 137.9, 137.7, 128.6, 128.5,
128.4, 128.3, 128.1, 128.0, 127.7, 82.8, 80.5, 79.1, 78.1, 73.5,
72.9, 72.5, 70.5, 62.7, 14.2; HRMS calcd for C33H36Cl2N2O6
622.1637, found 622.1617. Anal. (C33H36Cl2N2O6) H,N; C:
calcd, 63.57; found, 62.90.
E t h yl 3,5-Dich lor o-6-(â-D-r ib ofu r a n osyl)p yr a zin e-2-
ca r boxyla te (4). A flame-dried, evacuated, 100-mL round-
bottom flask was charged with 3 (680 mg, 1.1 mmol) under
argon. This was dissolved in dry dichloromethane (25 mL)
and cooled to -70 °C. To this solution was added boron
trichloride (1.0 M solution in heptane, 6.5 mL, 6.5 mmol)
dropwise, and the bright yellow mixture was allowed to stir
at -70 °C for 150 min. The excess boron trichloride was then
quenched at -70 °C with ethanol/dichloromethane (1:1, 10 mL)
and warmed to room temperature, and the solution was
neutralized with 3 N aqueous ammonium hydroxide. The
solvent was evaporated to give a yellowish solid. This solid
was then taken up in hot ethyl acetate, and the insoluble
ammonium chloride was filtered off through Celite. A minimal
amount of silica gel was added to the filtrate, and the solvent
Con d ition E: Alternately, a 25-mL pressure tube was
charged with 4 (200 mg, 0.57 mmol). To this tube was added
ethanolic ammonia (saturated at 0 °C, 7.5 mL), the tube was
sealed, and the reaction continued at 4 °C for 48 h. At this
point, TLC indicated that all starting material had been
consumed. A minimal amount of silica gel was added, and
the solvent was evaporated in vacuo. The compound (absorbed
on silica gel) was subjected to column chromatography (SiO2,
40 × 150 mm, 10% methanol/chloroform, Rf ) 0.38) to give,
following solvent evaporation, 5 (73 mg, 38%) as a white
solid: mp, 1H NMR, and 13C NMR all correspond to the
compound prepared above.
Also isolated was 61 mg (35%) of 7 as a white solid: Rf, mp,
1H NMR, and 13C NMR all correspond to the compound
prepared below.
Eth yl 3-Ch lor o-5-(m eth yla m in o)-6-(â-D-r ibofu r a n osyl)-
p yr a zin e-2-ca r boxyla te (6). Con d ition B: A flame-dried,
evacuated 50-mL pressure tube was charged with 4 (353 mg,
1.0 mmol) under argon, and this was dissolved in dry tetrahy-
drofuran (10 mL). To this solution was added a solution of
methylamine (2.0 M in tetrahydrofuran, 1.1 mL, 2.2 mmol) in
one portion, and the tube was sealed. A precipitate formed
immediately and, after 60 min at room temperature, TLC
indicated that all starting material had been consumed.
A
minimal amount of silica gel was added, and the solvent was
evaporated in vacuo. The compound (absorbed on silica gel)
was subjected to column chromatography (SiO2, 20 × 180 mm,
10% methanol/chloroform, Rf ) 0.37) to give, following solvent
evaporation, 6 (198 mg, 57%) as white needles: mp 174-175
1
°C; H NMR (300 MHz, DMSO-d6) δ 8.01 (bd, 1, J ) 4.6 Hz,
D2O exchangeable), 5.54 (pt, 1, J ) 4.2 Hz, D2O exchangeable),
5.12 (d, 1, J ) 6.5 Hz, D2O exchangeable), 5.01 (d, 1, J ) 4.8
Hz, D2O exchangeable), 4.74 (d, 1, J ) 7.7 Hz), 4.26 (m, 3),
4.01 (dd, 1, J ) 5.0, 8.2 Hz), 3.95 (m, 1), 3.63 (m, 2), 2.85 (d,
3, J ) 4.6 Hz), 1.30 (t, 1, J ) 7.1 Hz); 13C NMR (125 MHz,
DMSO-d6) δ 164.3, 153.5, 146.8, 138.2, 126.1, 86.9, 84.8, 72.8,
72.4, 61.7, 61.6, 28.7, 15.0. Anal. (C13H18ClN3O6) C,H,N.
5-Am in o-3-ch lor o-6-(â-D-r ibofu r a n osyl)p yr a zin e-2-ca r -
boxa m id e (7). Con d ition C: A 25-mL pressure tube was
charged with 4 (177 mg, 0.5 mmol). To this tube was added