Communications
zo[1,2-a]pyridin-6-amine 6 (8.0 g, 35.4 mmol), 2-methylpyrimidine-
5-carboxylic acid (6.11 g, 1.25 equiv) and triethylamine (10.74 g,
3 equiv) in 250 mL CH2Cl2, propylphosphonic anhydride (T3P;
50 wt% in EtOAc, 33.8 g, 1.5 equiv) was added dropwise. The re-
sulting mixture was stirred at RT for 18 h. To complete the reaction,
2-methylpyrimidine-5-carboxylic acid (3 g), triethylamine (10 mL)
and T3P (50 wt% in EtOAc, 15 mL) were added and the mixture
was stirred for another 18 h at RT. Saturated NaHCO3 aqueous solu-
tion was added to the reaction mixture. The resulting insoluble
material was filtered off, washed with water and after high vacuum
drying, 6.9 g of the title compound were obtained as a beige solid.
The organic phase was dried over sodium sulfate and the solvents
were removed in vacuo, the crude residue was purified by flash
chromatography eluting with CH2Cl2/MeOH (100:0 to 80:20) to
afford 1.08 g of the title compound. Compound 7 was obtained as
a beige solid with a total recovery of 7.98 g (59% yield). MS (m/z):
346.1/348.1 [M+H]+; 1H NMR (600 MHz, [D6]DMSO): d=10.54 (s,
1H), 9.23 (s, 2H), 8.74 (s, 1H), 8.09 (s, 1H), 7.62 (s, 1H), 2.74 (s, 3H),
2.40 ppm (s, 3H).
tylmethyl ether and after high-vacuum drying, the titled com-
pound was isolated as a white powder (3.91 g, 90% yield) and was
used without further purification.
2) (S)-2-Methyl-N-(7-methyl-8-((3-methylpiperazin-1-yl)methyl)i-
midazo[1,2-a]pyridin-6-yl)pyrimidine-5-carboxamide hydrochlo-
ride salt (3.91 g, 7.44 mmol), cyclopentanecarboxylic acid (1.02 g,
1.02 equiv) and triethylamine (7.26 mL, 7 equiv) were dissolved in
100 mL of CH2Cl2 and then, T3P (50 wt% in EtOAc, 5.9 g, 1.2 equiv)
was added dropwise. The resulting mixture was stirred at RT for
18 h and then washed with saturated NaHCO3 aqueous solution
twice. The aqueous phases were combined and extracted with
CH2Cl2. The organic phases were combined, washed with brine,
dried over sodium sulfate and concentrated in vacuo to afford
a light-yellow foam. The crude compound was purified by flash
chromatography eluting with CH2Cl2/MeOH (99:1 to 90:10) to
afford the titled compound as an off-white solid (2.6 g, 72.7%
1
yield). MS (m/z): 476.4 [M+H]+; H NMR (600 MHz, [D6]DMSO): d=
10.29 (s, 1H), 9.22 (s, 2H), 8.64 (s, 1H), 7.92 (s, 1H), 7.53 (s, 1H),
4.53 (bs, 0.5H), 4.17 (m, 1H), 4.0–3.85 (m, 2H), 3.71 (d, 0.5H), 3.10
(t, 0.5H), 2.90 (m, 1H), 2.75–2.55 (m, 5.5H), 2.37 (s, 3H), 2.17 (m,
1H), 1.98 (m, 1H), 1.85–1.45 (m, 8H), 1.17 and 1.05 ppm (d, 3H).
Potassium (S)-((4-(tert-butoxycarbonyl-3-methylpiperazin-1-yl)-
methyl)trifluoroborate 8: A mixture of potassium (bromomethyl)-
trifluoroborate (30 g, 139 mmol) and (S)-1-N-Boc-2-methylpipera-
zine (31.4 g, 1.05 equiv) in 150 mL of THF was held at reflux under
nitrogen atmosphere for 18 h. The mixture was cooled to RT and
the solvent was removed in vacuo. The residue was taken up in
900 mL of acetone and potassium carbonate (41.3 g, 2 equiv) was
added. The resulting mixture was stirred at RT for 18 h. The precipi-
tate was filtered off, washed with acetone and after high vacuum
drying, the title compound was obtained as a white powder
(42.05 g, 88% yield) and was used without further purification. MS
(m/z): 280.2/281.2/282.2 [MꢀH]ꢀ; 1H NMR (600 MHz, [D6]DMSO,
1008C): d=4.14 (m, 1H), 3.72 (m, 1H), 3.17–2.96 (m, 3H), 2.47–2.16
(bm, 2H), 1.65 (bs, 2H), 1.42 (s, 9H), 1.20 (d, 3H).
(S)-N-(8-((4-(5-(tert-Butyl)-1,2,4-oxadiazol-3-yl)-3-methylpipera-
zin-1-yl)methyl)-7-methylimidazo[1,2-a]pyridin-6-yl)-2-methyl-
pyrimidine-5-carboxamide 33: 1) (S)-N-(8-((4-cyano-3-methylpi-
perazin-1-yl)methyl)-7-methylimidazo[1,2-a]pyridin-6-yl)-2-meth-
ylpyrimidine-5-carboxamide. At 08C, to a solution of (S)-2-methyl-
N-(7-methyl-8-((3-methylpiperazin-1-yl)methyl)imidazo[1,2-a]pyri-
din-6-yl)pyrimidine-5-carboxamide hydrochloride salt (2.84 g,
5.05 mmol) in 50 mL of CH2Cl2, DIPEA (3.26 g, 5 equiv) was added
followed by BrCN (3m in CH2Cl2, 1.68 mL, 1 equiv). The mixture
was stirred at RT for 1 h and then quenched by addition of brine.
The organic phase was separated, dried over sodium sulfate and
concentrated in vacuo to afford the titled compound as a crude
beige oil (2.05 g, quant.) which was used without further purifica-
tion.
(S)-tert-Butyl-2-methyl-4-((7-methyl-6-(2-methylpyrimidine-5-car-
boxamido)imidazo[1,2-a]pyridin-8-yl)methyl)piperazine-1-car-
boxylate 9: To a degassed solution of N-(8-bromo-7-methylimida-
zo[1,2-a]pyridin-6-yl)-2-methylpyrimidine-5-carboxamide 7 (3.63 g,
10.49 mmol), potassium (S)-((4-(tert-butoxycarbonyl-3-methylpiper-
azin-1-yl)methyl)trifluoroborate 8 (6.72 g, 2 equiv), X-Phos (750 mg,
0.15 equiv) and cesium carbonate (10.25 g, 3 equiv) in 60 mL THF/
water (9:1), palladium acetate (177 mg, 0.075 equiv) was added
and the mixture was then stirred under argon atmosphere at 808C
for 40 h. The mixture was diluted with EtOAc and washed with sa-
turated NaHCO3. The organic phase was separated, dried over
sodium sulfate and the resulting crude residue was purified by
flash chromatography eluting with CH2Cl2/MeOH (99:1 to 90:10) to
afford the titled compound as a light-yellow solid (3.98 g, 79%
2) (S)-N-(8-((4-(N-Hydroxycarbamimidoyl)-3-methylpiperazin-1-
yl)methyl)-7-methylimidazo[1,2-a]pyridin-6-yl)-2-methylpyrimi-
dine-5-carboxamide. A mixture of S)-N-(8-((4-cyano-3-methylpiper-
azin-1-yl)methyl)-7-methylimidazo[1,2-a]pyridin-6-yl)-2-methylpyri-
midine-5-carboxamide (2.05 g, 5.05 mmol) and hydroxylamine
(50 wt% in water, 1.33 g, 4 equiv) in 50 mL of EtOH was held at
reflux for 2 h. The mixture was concentrated to dryness in vacuo to
afford a crude brown oil (2.2 g) which was used without further
purification in the next step.
3) (S)-N-(8-((4-(5-(tert-Butyl)-1,2,4-oxadiazol-3-yl)-3-methylpiper-
azin-1-yl)methyl)-7-methylimidazo[1,2-a]pyridin-6-yl)-2-methyl-
pyrimidine-5-carboxamide 33. A mixture of the crude (S)-N-(8-((4-
(N-hydroxycarbamimidoyl)-3-methylpiperazin-1-yl)methyl)-7-meth-
ylimidazo[1,2-a]pyridin-6-yl)-2-methylpyrimidine-5-carboxamide
(2.2 g, 5.05 mmol), pivalic anhydride (3.76 g, 4 equiv) and trimethyl-
amine (3.26 g, 5 equiv) in 100 mL of CH2Cl2 was stirred at RT for 2 h
and then held at reflux for 16 h. The mixture was washed with sa-
turated aqueous NaHCO3 solution twice. The aqueous phases were
combined and extracted with CH2Cl2. The organic phases were
combined, washed with brine, dried over sodium sulfate and con-
centrated in vacuo to afford the crude compound which was puri-
fied by flash chromatography eluting with CH2Cl2/MeOH (99:1 to
90:10) to afford the title compound as an off-white solid (1.04 g,
40.9% yield). MS (m/z): 504.4 [M+H]+; 1H NMR (600 MHz,
[D6]DMSO): d=10.26 (s, 1H), 9.20 (s, 2H), 8.63 (s, 1H), 7.91 (s, 1H),
7.52 (s, 1H), 3.94 (q, 3H), 3.48 (d, 1H), 3.15 (d, 1H), 3.10–2.96 (m,
1
yield). MS (m/z): 480.4 [M+H]+; H NMR (600 MHz, [D6]DMSO): d=
10.29 (s, 1H), 9.22 (s, 2H), 8.63 (s, 1H), 7.91 (s, 1H), 7.53 (s, 1H),
4.07 (bs, 1H), 3.91 (m, 2H), 3.64 (m, 1H), 2.86 (m, 1H), 2.73 (s, 3H),
2.62 (m, 2H), 2.36 (s, 3H), 2.20 (m, 1H), 2.00 (m, 1H), 1.39 (s, 9H),
1.08 ppm (2 s, 3H).
(S)-N-(8-((4-(Cyclopentanecarbonyl)-3-methylpiperazin-1-yl)-
methyl)-7-methylimidazo[1,2-a]pyridin-6-yl)-2-methylpyrimidine-
5-carboxamide 10: 1) (S)-2-methyl-N-(7-methyl-8-((3-methylpi-
perazin-1-yl)methyl)imidazo[1,2-a]pyridin-6-yl)pyrimidine-5-car-
boxamide hydrochloride salt. To a solution of (S)-tert-butyl-2-
methyl-4-((7-methyl-6-(2-methylpyrimidine-5-carboxamido)imida-
zo[1,2-a]pyridin-8-yl)methyl)piperazine-1-carboxylate
9
(3.97 g,
8.28 mmol) in 70 mL of CH2Cl2, 4m HCl in dioxane (20.7 mL,
10 equiv) was added. The resulting mixture was stirred at RT for
2 h. The resulting precipitate was filtered off, washed with tert-bu-
ChemMedChem 2016, 11, 1 – 10
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