Artificial Receptor for Cholera Toxin
J. Am. Chem. Soc., Vol. 121, No. 10, 1999 2033
grip: the large majority of interactions between the receptor
and the toxin involve Gal-IV and NeuAc, with a limited
contribution from the N-acetylgalactosamine (GalNAc) residue
(see Figure 1). A computational model of the LT:GM1 complex
which was a fair reproduction of the CT:GM1 X-ray structure
was obtained using a Monte Carlo/energy minimization (MC/
EM) conformational search of the sugar within the toxin binding
pocket.7
NMR data8 and MC/EM calculations9 for GM1 in water
solution have revealed that its pentasaccharide is significantly
conformationally restricted. In particular the core trisaccharide
GalNAcâ1-4(NeuAcR2-3)Galâ was found to exist mainly in
a single conformation, which closely resembles the bound
conformation observed by X-ray crystallography. The Galâ1-
3GalNAc anomeric bond is only slightly more flexible, and the
NOE contacts observed around it can be interpreted as arising
from either two8 or one “average”9 conformations. The overall
picture is that of a highly preorganized receptor for toxin
binding. Very likely, the loss of conformational freedom in GM1
results from the 3,4-branching at Gal-II (Figure 1);10-12 thus
this residue, which does not interact with the protein, appears
to act as a scaffold and hold Gal-IV and NeuAc in the required
position. The GM1 mimic 2 was designed based on this
hypothesis by retaining the ganglioside binding determinants
and replacing the scaffold element with an appropriate diol,
designed to reproduce the topological features of a 3,4-
disubstituted galactose.
Figure 2. (a) Lowest energy conformation of 2. (b) Solution
conformation of GM1 1 (from refs 8 and 9).
their sugar complexes6c and were likewise included in the calculation
of the LT:2 complex.
NMR. ROESY experiments26 were conducted applying a spin lock
pulse of 2.6 kHz strength at one end of the spectrum to avoid scalar
transfer.8,18 For the experiments in D2O, mixing time was varied between
150 and 220 ms and the temperature in the range 303-313 K. For the
experiments in DMSO, mixing time was varied between 180 and 230
ms and the temperature in the range 303-318 K. Spectral assignments
are reported as Supporting Information.
Inhibition of the GM1:CT Formation. Binding of 2 to CT was
investigated by measuring the inhibition of GM1:CT formation.19 In
parallel experiments GM1 oligosaccharide was used. Each well of a
96-well microtiter plate (Greiner) was covered with 0.5 µg of GM1
dissolved in 50 µL of 95% ethanol. After overnight drying at room
temperature the wells were incubated for 2.5 h with 250 µL of 1%
albumin in 0.05 M PBS (sodium phosphate buffer, pH 7.4, 9% NaCl).
After removal of the solution, the wells were washed five times with
0.05 M PBS and incubated for 2.5 h with 50 µL of 1% albumin in
0.05 M PBS containing 0.2 µg of Vibrio cholerae toxin B subunit
conjugated to horseradish peroxidase (Sigma) preincubated for 2.5 h
with increasing amounts of GM1 oligosaccharide or 2. The CT solution
was discarded, the wells were washed five times with 250 µL of 0.05
M PBS, and 50 µL of a 0.04% solution of o-phenyldiammine in 0.02
M citrate/phosphate buffer (pH 5) and 17 µL of H2O2 were added.
After 20 min in the dark, 50 µL of H2SO4 were added to block the
reaction, and the color intensity was determined by spectrophotometry.
Materials and Methods
Materials. GM1 ganglioside was prepared13 from the total ganglio-
side mixture extracted from calf brain.14 The penta-oligosaccharide of
GM1 was obtained by ozonolysis of GM1, followed by alkaline
hydrolysis.15
Computational. All calculations were run with MacroModel 4.5,16
using the AMBER* force field with MNDO-derived parameters for
NeuAc9 and following previously established MC/EM protocols.7,9
Twenty thousand MC/EM steps were performed both for the complex
and isolated 2. Bulk water solvation was simulated using MacroModel’s
generalized Born GB/SA continuum solvent model.17 Previous studies7
had shown that under these conditions the crystal structure of the CT:
GM1 complex was best reproduced when five crystallographic water
molecules were retained. Of these, three are located outside the protein
binding site and solvate the carboxy group of Glu-51. The other two
molecules, at crystallographic solvation sites 2 and 3, mediate specific
interactions between the sugar and the protein. These molecules were
consistently found in a set of five different structures of LT, CT, and
Results and Discussion
After the central 3,4-disubstituted Gal-II unit of GM1 was
recognized as the ganglioside scaffold element, the design of a
structural and functional analogue was sought using an ap-
propriate conformationally locked cis-1,2-cyclohexanediol to
replace it. One such molecule is the dicarboxy cyclohexanediol
3 (DCCHD), which possesses the same absolute and relative
configuration of natural galactose and is locked in a single chair
conformation. Indeed, MM3* calculations show that the chair
conformation of DCCHD depicted in Figure 1 is 3.2 kcal mol-1
more stable than the chair which features trans diaxial carboxy
groups.
(7) Bernardi, A.; Raimondi, L.; Zuccotto, F. J. Med. Chem. 1997, 40,
1855-1862.
(8) Acquotti, D.; Poppe, L.; Dabrowski, J.; v. d. Lieth, C.-W.; Sonnino,
S.; Tettamanti, G. J. Am. Chem. Soc. 1990, 112, 7772-7778.
(9) Bernardi, A.; Raimondi, L. J. Org. Chem. 1995, 60, 3370-3377.
(10) Both the unbranched carbohydrates asialo-GM1 (ref 11) and GM4
(NeuAc(R2,3)Gal-âOMe) (ref 12) were shown to be considerably more
flexible than GM1 by NMR spectroscopy.
(11) Scarsdale, N. J.; Prestegard, J. H.; Yu, R. K. Biochemistry 1990,
29, 9843-9855 and references therein.
Based on the above considerations, the pseudo-tetrasaccharide
2, which retains the Gal and NeuAc recognition determinants
and uses 3 as the scaffold element, was devised as an artificial
receptor for LT and CT. Conformational analysis of 2 was
performed both for the isolated molecule and in the binding
pocket of LT, and the predicted three-dimensional structures
were compared to those of GM1.
(12) Poppe, L.; Dabrowski, J.; v. d. Lieth, C.-W.; Numata, M.; Ogawa,
T. Eur. J. Biochem. 1989, 180, 337-342.
(13) Acquotti, D., Cantu´, L., Ragg, E.; Sonnino, S. Eur. J. Biochem.
1994, 225, 271-288
(14) Tettamanti, G.; Bonali, F.; Marchesini, S.; Zambotti, V. Biochim.
Biophys. Acta 1973, 296, 160-170
(15) Wiegandt, H.; Bucking, H. W. Eur. J. Biochem. 1970, 15, 287-
292.
(16) Mohamadi, F.; Richards, N. G. J.; Guida, W. C.; Liskamp, R.;
Lipton, M.; Caufield, C.; Chang, G.; Hendrickson, T.; Still, W. C. J. Comput.
Chem. 1990, 11, 440-467.
(17) Still, W. C.; Tempzyk, A.; Hawley, R.; Hendrickson, T. J. Am.
Chem. Soc. 1990, 112, 6127-6129.
(18) Farmer, H. B. T.; Macura, S.; Brown, L. R. J. Magn. Res. 1987,
72, 347-352.
(19) Wu, G.; Leeden, R. Anal. Biochem. 1988, 173, 368-375; Carpo,
M.; Nobile-Orario, E.; Chigorno, V.; Sonnino, S. Glycoconjugate J. 1995,
12, 729-731.