46
K. Matelková et al. / Polyhedron 95 (2015) 45–53
Table 1
2. Experimental
2.1. Synthesis
Crystallographic data for 1 and 2.
Chemical formula
C57H53N16Ni2O4 (HCO2)3 C7H19N4NiO2ꢀ(ClO4)ꢀ(H2O)
4H2Oa
Mr
1374.10b
Monoclinic
P21/c
367.44
Monoclinic
P21/n
Ethanol and methanol were purified before use by standard
methods. Nickel(II) formate, as a hydrate was synthesized by
slowly adding the stoichiometric amount of the nickel(II)-carbon-
ate to the aqueous-ethanol solution of the formic acid in excess.
All other chemicals were purchased commercially and used
without further purification.
Crystal system
Space group
T (K)
a (Å)
b (Å)
300(1)
95(1)
16.680(2)
24.021(2)
17.071(2)
90
12.7790(10)
7.5944(4)
15.6210(10)
90
c (Å)
a
(°)
The complex [Ni2(HCOO)(bz)8(H2O)2](HCOO)3ꢀ4H2O (1) was
prepared by reaction of benzimidazole (2.5 g) with Ni(HCOO)2ꢀ
2H2O (1 g) in molar ratio 4:1 in warm dried ethanol under reflux
conditions for 4 h. After a few days of slow evaporation the solid
substances were filtered off. Within several days small turquoise
crystals suitable for X-ray crystallographic studies had formed.
Found: N, 16.7; C, 53.2; H, 4.97; Ni, 9.0. [Ni2(HCOO)(bz)8(H2O)2]
(HCOO)3ꢀ4H2O requires N, 16.6; C, 53.4; H, 4.78; Ni, 8.7%.
From water–methanol solution the compound of composition
[Ni(tren)(HCOO)]ClO4ꢀH2O (2) has been prepared. To dissolved
Ni(ClO4)2ꢀ6H2O (0.50 g) in 10 cm3 of methanol in the first beaker
tris(2-aminoethyl)amine (tren, 0.40 g) has been added producing
a purple solution. The solution consisting of Ni(HCOO)2ꢀ2H2O
(0.25 g) and distilled water (20 cm3) was prepared in the second
beaker and combined with the first one. After a few minutes of stir-
ring 10 cm3 of methanol was added and then 30 cm3 of distilled
water. The mixture was stirred ca one and half h. and fine precip-
itate was filtered off. The clear solution was allowed to stand for
two months while violet crystals crystallized. Found: N, 15.25; C,
22.88; H, 5.76; Ni, 15.97. [Ni(tren)(HCOO)]ClO4ꢀH2O requires N,
15.26; C, 23.01; H, 5.68; Ni, 16.00%.
b (°)
98.67
90
6775.76
4
0.71037
1.13
109.724(9)
90
1427.06
4
0.71037
1.583
c
(°)
V (Å3)
Z
k (Mo K
a
)/Å
l
(mmꢁ1
)
Crystal size (mm)
0.44 ꢂ 0.28 ꢂ 0.20
0.20 ꢂ 0.14 ꢂ 0.06
qcalc (g cm–3
)
1.121
1.710
S
0.984
1.184
0.0584
0.1484
R1 [I > 2
wR2 [all data]
r(I)]
0.1138
0.3426
0.74, ꢁ0.49
1005076
D
CCDC
imax
;
D
imin (e Åꢁ3
)
0.83, ꢁ0.50
1005077
a
The solvent water molecule content was estimated from the electron density
attributed to the disordered solvent contribution by SQUEEZE
The molecular weight was calculated using disordered solvent and anion
molecules.
.
b
Table 2
Selected bond lengths (Å) of 1 and 2.
1
Ni1–N11
Ni1–N21
Ni1–N31
Ni1–N41
Ni1–O1
2.087(2)
2.062(2)
2.109(2)
2.069(2)
2.010(10)
2.061(12)
2.134(5)
Ni2–N51
Ni2–N61
Ni2–N71
Ni2–N81
Ni2–O2
2.105(2)
2.114(2)
2.049(2)
2.051(2)
2.023(10)
1.966(13)
2.204(6)
2.2. Physical measurements
Nickel content was determined by chelatometry after mineral-
ization of the complexes. Elemental analysis (C, H, N) was carried
out on Flash EA 1112 (ThermoFinnigan).
Ni1–O1I
Ni1–O1W
Ni2–O2I
Ni2–O2W
2
IR spectra were measured on Magna-FTIR-750 spectrometer
(Nicolet) in KBr pellets in the 4000–400 cmꢁ1 region. Electronic
spectra in the region 50000–10000 cmꢁ1 were recorded in the
Nujol mull on Specord 200 (Analytical Jena) spectrometer.
The single-crystal X-ray diffraction experiments were per-
formed using Xcalibur, sapphire CCD diffractometer (Oxford
Diffraction). The diffraction intensities were corrected for Lorentz
and polarization factors. The empirical absorption corrections were
performed by multi-scan method using SCALE3 ABSPACK in
Ni1–N1
Ni1–N2
Ni1–N3
2.110(5)
2.076(5)
2.086(5)
Ni1–N4
Ni1–O1
Ni1–O2
2.104(5)
2.045(4)
2.116(4)
Symmetry codes: (i) ꢁx + 1, ꢁy + 1, ꢁz + 1; (ii) ꢁx + 1, ꢁy, ꢁz + 1.
[Ni2(HCOO)(bz)8(H2O)2]3+ cations. Attempts in resolving the disor-
der adequately failed, and therefore, the utility SQUEEZE [29] in the
program PLATON [26] was used to remove diffuse electronic density.
The crystal structure of 1 contains in the unit cell one void of
1924 Å per cell containing 436 electrons, which represents three
formate anions and 4 molecules of water.
Temperature dependence of the magnetic susceptibility was
taken using SQUID magnetometer (MPMS, Quantum Design) at
the applied field of BDC = 0.1 T. Raw data were corrected for the
signal of the nylon-made sample holder as well as for underlying
diamagnetism using the set of Pascal constants [30]. The effective
CRYSALISPRO [22]. The structures were solved by the direct methods
with SHELXS-97 [23] or SIR-2011 [24], and refined by the full-matrix
least squares procedure with SHELXL-2014 [23]. Geometrical analy-
ses were performed using SHELXL-2014 and the structures were
drawn using the OLEX2 [25] and PLATON [26]. Final crystal data and
structure refinement parameters are given in Table 1. Selected
bond distances are listed in Table 2.
magnetic moment has been calculated as usual: leff
(
taken at T = 2.0, 4.6 and 20.0 K.
/lB = 798
The compound 1 forms poorly single crystals. More time was
tried to separate crystals for collecting data and only the best
crystal was used for structural analysis using. The refinement of
crystals structure of 1 had to be made using more constrains and
restrains. The complex cation [Ni2(HCOO)(bz)8(H2O)2]3+ of 1 has
been modeled using rigid-body constrains (FRAG/FEND) [27] and
rigid-bond restrains (RIGU) [28] for benzimidazole rings and
bridging formato ligand. The bridging formato ligand is disordered
occupying two statistical positions, represented by atoms
[O1,C1,O2]/[O1i,C1i,O2i] with site occupancy factors 0.54/0.46.
The uncoordinated formate anions and uncoordinated water mole-
v0T)1/2 when SI units are employed. The magnetization data was
2.3. Ab initio calculations
ORCA 3.0 computational package [31] was employed in all the
calculations using def2-TZVP(-f) basis set [32] for Ni, O and N
atoms and def2-SVP basis set for C and H atoms. Also, the RI
approximation with the decontracted auxiliary def2-TZV/J and
def2-SVP/J Coulomb fitting basis set or def2-TZV/C and def2-SVP/
C auxiliary basis sets for correlation calculations together with
cules in
1 are strongly disordered in the cavities between