A. Puratchikody, M. Doble / Bioorg. Med. Chem. 15 (2007) 1083–1090
1089
sity of the thermal stimulus was adjusted to produce 3–
4 s latency in tail-flick response. The latency was mea-
sured just before, 15, 30, 60 and 120 min after injections.
The trial was automatically terminated at 12 s if a re-
sponse did not occur (cut-off time). The prolongation
of the latency times compared with the values of the con-
trol was used for statistical comparison.
evolving random initial models using a genetic algo-
rithm. GFA can build models using not only linear poly-
nomials but also higher-order polynomials, splines and
other nonlinear functions. The goodness of the regres-
sion fits were estimated using statistical parameters such
as,
R2
(=1 ꢀ SSE/TSS),
R2adjð¼ 1 ꢀ ðn ꢀ 1Þ
ð1 ꢀ R2Þ=ðn ꢀ p ꢀ 1ÞÞ, q2 (=1 ꢀ PRESS/TSS) and F ratio
(=(n ꢀ 2)R2/(1 ꢀ R2)) and MSSE (=mean sum of square
of error = SSE/n), where TSS = total sum of squares and
SSE = sum of squares, PRESS = predictive sum of
squares based on leave-one-out method. R2 and Ra2dj
are indication of the model fit, while q2 is an indication
of the predictive capability of the model. A large F indi-
cates that the model fit is not a chance occurrence. R2,
R2adj and q2 above a value of 0.6 indicate good model fit.
4.5. Antiinflammatory activity
Antiinflammatory activity was determined by carrageen-
an-induced rat paw oedema method.30 Wistar rats of
either sex (120–150 g) were used in this study and
worked up as mentioned in the above method. The stan-
dard drug used here was indomethacin (10 mg/kg ip).
The control group received 0.2% Tween suspension
5 ml/kg ip. All the remaining 25 groups received between
9.5 and 12.58 mg/kg of the compounds 1–25 ip. After an
hour of test drug administration the animals were inject-
ed with 0.05 ml suspension of carrageenan (1.0% w/v in
0.9% NaCl) in the left hind paw planter aponeurosis.
The volume of paw was measured using the mercury dis-
placement technique with the help of a plethysmometer
(UGO-Basile, Italy). It was measured both in control as
well as in standard animals including the test animals at
an interval of 1, 2 and 3 h after carrageenan injection.
The initial volume of paw was measured immediately
before the injection. The increase in paw volume after
3 h was calculated. The percentage inhibition of inflam-
mation after 3 h was calculated by using Eq. 1.
References and notes
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Percentage inhibition ¼ 100½1 ꢀ ðV tÞ=ðV cÞꢁ
ð1Þ
where Vt = Mean relative changes in the paw volume of
each of the rats after the administration of carrageenan
and test or standard compound.
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Vc = Mean relative changes in the paw volume of each
of the rats after the administration of carrageenan injec-
tion in the control group.
4.6. Modelling methodology
ANOVA, cluster analysis and principal component
analysis were performed using a standard statistical soft-
ware package, KyplotÒ. The structure of the various
molecules as given in Table 1 was drawn and the energy
was minimized by using Universal force field available in
Cerius2 softwareÒ (Acceryls Inc, USA). Two hundred
and twenty-nine descriptors that include topological,
charge, geometrical, aromaticity indices, constitutive
properties, quantum mechanics and thermodynamics
were evaluated for all the molecules. Several literature
reports give a very detailed description of these descrip-
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was used to select the descriptors from this large pool
for using in the QSAR model.
The GFA uses a genetic algorithm to perform a search
over the space of possible QSAR models using the lack
of fit (LOF) score to estimate the fitness of each model.
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