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G.S. Suresh Kumar et al. / Journal of Molecular Structure 1059 (2014) 51–60
Xanthenes have received more attention due to their bioactivi-
(s, 2H), 5.20 (s, 1H), 6.63 (d, J = 8.7 Hz, 1H), 6.89 (t, J = 7.5 Hz,
1H), 6.96 (d, J = 7.5 Hz, 1H), 7.11 (t, J = 7.8 Hz, 1H); 13C NMR
(75 MHz, d ppm): 18.7, 21.7, 23.6, 26.7, 35.3, 45.1, 59.9, 105.1,
110.1, 116.6, 122.5, 123.5, 127.6, 147.7, 157.9, 164.5, 191.9; IR
ties against human pathogens [3]. They exhibit antifungal-,
antiviral-, antibacterial-, anti-inflammatory, etc. activity [4].
Furthermore, xanthenes are used in dyes, laser technologies, and
fluorescent materials for visualization of biomolecules [5]. Due to
the versatile application possibilities of xanthenes, there is a
continuous exploration for the formulation of newer synthetic
entities via efficient methods. Phenoxyaliphatic acid derivatives
possess a wide range of diverse bioactivities such as anti-inflam-
matory, antioxidant, antibacterial, analgesic, antisickling, antipae-
mic, antiplatelet, DPPH radical scavenging, DNA protection,
non-prostanoid prostacyclin mimetic, diuretic, and growth
regulatory [6].
Water finds an important role in organic syntheses as solvent
because of its abundance and less toxicity. Based on the solubility
of starting materials in water and reaction conditions, water-med-
iated reactions are classified either as ‘in-water’ process or ‘on-
water’ process [7,8].
Syntheses of xanthenes from dimedone and aromatic alde-
hyde(s) using Bronsted–Lowry acid catalysts have been reported
earlier [9]. To the best of our knowledge, we have not encountered
any report regarding the use of aromatic aldehydes bearing carbox-
ylic acid group in the side chain for the formation of 1,8-dioxo-
octahydroxanthenes. This mooted us to carry the one-pot synthe-
ses of 1,8-dioxo-octahydroxanthenes from dimedone and formyl-
phenoxyacetic acid(s) at elevated temperature in water without
any external acid catalyst. In the present study, we have prepared
different xanthene derivatives making use of the inherent self cat-
alyzing capacity of the carboxylic acid group present in the phen-
oxyaliphatic acids. DPPH radical scavenging activity, cytotoxicity,
and molecular properties of the newly synthesized compounds
were studied by single crystal XRD and DFT methods.
(KBr, m
, cmÀ1): 1756, 1664; ESI MS: m/z (M + H) 425.0. Anal.Calcd.
for C25H28O6: C, 70.74; H, 6.65%. Found: C, 70.72; H, 6.68%.
2.2.2. 2-(2-methoxy-6-(3,3,6,6-tetramethyl-1,8-dioxo-2,3,4,5,6,7,8,9-
octahydro-1H-xanthen-9-yl)phenoxy)acetic acid (2b)
Pale yellow solid, 84%, m.p. 221–223 °C; 1H NMR (300 MHz, d
ppm): 0.97 (s, 6H), 1.08 (s, 6H), 2.14 (dd, 4H), 2.49 (s, 4H), 3.78
(s, 3H), 4.67 (s, 2H), 4.99 (s, 1H), 6.64 (d, J = 7.3 Hz, 1H), 6.74 (d,
J = 7.8 Hz, 1H), 6.88 (t, J = 7.8 Hz, 1H); ESI MS: m/z (M-H) 453.4;
Anal.Calcd. for C26H30O7: C, 68.71; H, 6.65%. Found: C, 68.76; H,
6.69%.
2.2.3. 2-[4-(3,3,6,6-Tetramethyl-1,8-dioxo-2,3,4,5,6,7,8,9-octahydro-
1H-xanthen-9-yl)phenoxy]acetic acid (2c)
Pale yellow solid, 80%, m.p. 210–212 °C; 1H NMR (300 MHz, d
ppm): 0.99 (s, 6H), 1.11 (s, 6H), 2.00 (s, 4H), 2.46 (s, 4H), 4.75 (s,
2H), 5.30 (s, 1H), 7.24 (m, 4H); IR (KBr, cmÀ1): 1758, 1662; ESI
MS: m/z (M + H) 425.0; Anal.Calcd. for C25H28O6: C, 70.74; H,
6.65%. Found: C, 70.76; H, 6.69%.
2.2.4. 3,3,6,6-Tetramethyl-9-phenyl-3,4,5,6,7,9-hexahydro-1H-
xanthene-1,8(2H)-dione (5a)
Pale yellow solid, m.p. 188–190 °C, 86%, 1H NMR (300 MHz, d
ppm): 0.99 (s, 6H), 1.10 (s, 6H), 2.20 (4H), 2.67 (s, 4H), 4.75 (s,
1H), 7.12 (d, J = 7.5 Hz, 1H), 7.21 (t, J = 7.2 Hz, 2H), 7.27 (d,
J = 8.1 Hz, 2H); Anal.Calcd. for C23H26O3: C, 78.83; H, 7.48%; Found:
C, 78.80; H, 7.44.
2.2.5. Ethyl 2-[2-(3,3,6,6-tetramethyl-1,8-dioxo-2,3,4,5,6,7,8,9-
octahydro-1H-xanthen-9-yl)phenoxy]acetate (5b)
2. Experimental
Yellow solid, 82%, m.p. 178–180 °C; 1H NMR (300 MHz, d ppm):
0.97 (s, 6H), 1.08 (s, 6H), 1.29 (t, J = 7.0 Hz, 3H), 2.17 (s, 2H), 2.53 (s,
2H), 4.25 (q, J = 6.9 Hz, 2H), 4.54 (s, 2H), 4.87 (s, 1H), 6.63 (d,
J = 8.1 Hz, 1H), 6.91 (t, J = 7.5 Hz, 1H), 7.09 (t, J = 7.5 Hz, 1H), 7.68
(d, J = 8.1 Hz, 1H); 13C NMR (75 MHz, d ppm): 14.0, 27.1, 29.0,
29.9, 31.8, 40.7, 50.6, 60.8, 65.9, 111.5, 113.3, 121.2, 127.6, 130.7,
132.6, 156.0, 162.7, 168.4, 196.4; IR (KBr, cmÀ1): 1762, 1662; ESI
MS: m/z (M + H) 453.0; Anal.Calcd. for C27H32O6: C, 71.66; H,
7.13%; Found: C, 71.62; H, 7.16%.
2.1. General
Phenoxyaliphatic acids [10] and their corresponding esters [11]
were synthesized as per the reported methods. Melting points
were measured in open capillary tubes and are uncorrected. Infra-
red spectra were recorded on a JASCO FT-IR Model 410 spectropho-
tometer (KBr disc). Band positions are reported in reciprocal
centimetres (cmÀ1). The 1H NMR and 13C NMR spectra were re-
corded on a Bruker (Avance) 300 MHz NMR instrument using
TMS as internal standard and CDCl3 as solvent. The electrospray
mass spectra were recorded on a THERMO Finnigan LCQ Advantage
2.3. Single crystal XRD
The crystal structures were determined using a BRUKER APEX 2
X-ray (three-circle) diffractometer. The data reduction was done
with the program APEX2 [12]. The absorption correction was em-
ployed using the program SADABS [13]. The structure solution
was obtained using SHELXTL (XS) [14] and refined on F2 to conver-
gence [14,15]. Absence of additional symmetry was verified using
PLATON (ADDSYM) [16]. Powder X-ray diffraction data were re-
corded at room temperature using XPERT-PRO diffractometer sys-
max ion trap mass spectrometer. Samples (10 lL) (dissolved in sol-
vent such as methanol/acetonitrile/water) were introduced into
the ESI source through Finnigan surveyor autosampler. Elemental
analyses were performed on a Perkin Elmer 2400 Series II Elemen-
tal CHNS analyzer. Silica gel-G plates (Merck) were used for TLC
analysis with a mixture of hexanes and ethyl acetate as eluent.
2.2. General synthesis of phenoxyaliphatic acids of xanthene
tem with CuK 1, CuK 2, and CuKb with radiation of wavelength
a
a
1.54060, 1.54443, and 1.39225 Å respectively.
Formylphenoxyaliphatic acid (1 equi.) was dissolved in water
(10 mL) at 80 °C and dimedone (2 equi.) was added with vigorous
stirring. After 10 min, the reaction mixture was cooled to room
temperature, the solid was filtered, washed with water, dried well,
and recrystallized from hot ethanol.
2.4. DPPH radical scavenging assay
The radical scavenging activity of the compounds was evaluated
as per the method of Blois [17] with a slight modification [18]. The
compounds (2a–c, 5b) and BHA at different concentrations (25, 50,
75, and 100 ppm in 1 mL) were taken in different test tubes. Four
milliliters of 0.1 mM methanolic solution of DPPH was added to
these tubes and shaken vigorously. The tubes were allowed to
stand at 27 °C for 20 min. The control was prepared as above in
2.2.1. 2-[2-(3,3,6,6-Tetramethyl-1,8-dioxo-2,3,4,5,6,7,8,9-octahydro-
1H-xanthen-9-yl)phenoxy]acetic acid (2a)
Pale yellow solid, 82%, m.p. 206–208 °C; 1H NMR (300 MHz, d
ppm): 0.99 (s, 6H), 1.11 (s, 6H), 2.21 (s, 4H), 2.49 (s, 4H), 4.85