P. Cerea et al. / Tetrahedron 63 (2007) 4108–4119
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4.1.16. [Boc-aeg(T)PNA] [Nb-Cbz-hyd(T)PNA-
COOCH3] (21). Compound 32 (301 mg, 0.78 mmol) was
dissolved in dry DMF (2 mL) and then 27 (400 mg,
0.71 mmol) was added. DhbtOH (128 mg, 0.78 mmol) and
DIEA (268 mL, 202 mg, 1.57 mmol) were added under vig-
orous stirring. The reaction mixture was then cooled to 0 ꢀC
in an ice bath, and EDC$HCl (150 mg, 0.78 mmol) was
added portionwise. The mixture was allowed to warm to rt
and the pH was adjusted to 9 with DIEA. The mixture was
stirred for 85 h. The reaction mixture was then concentrated
to dryness, and dissolved in water (20 mL) and ethyl acetate
(30 mL). The aqueous layer was extracted with ethyl acetate
(4ꢁ15 mL). The organic phases were collected and washed
with 0.1 M aq KHSO4 (2ꢁ80 mL), water (2ꢁ60 mL), satd
aq NaHCO3 (3ꢁ60 mL) and brine (1ꢁ60 mL). All of the
aqueous phases were combined and extracted with ethyl ace-
tate (2ꢁ80 mL). These organic phases were combined with
the first and dried over Na2SO4. The organic phase was fil-
tered and concentrated to dryness in vacuo to afford
426 mg of the crude product. Column chromatography on
silica gel (ethyl acetate/MeOH 8:2) afforded 21 (376 mg,
110.6 (2 ]C q. ov.), 79.9, 67.7, 55.1, 51.0–46.5 (7CH2
ov.), 38.2, 28.3, 13.4–12.1 (2CH3 ov.); mass spectrum ESI
m/z 836.3169 (C36H47F3N9O13+Na requires 836.3185); IR
(KBr, cmꢂ1): 3467, 3066, 1666, 1473, 1421, 1385, 1251,
1218, 1172, 1092, 1044, 964, 819, 784, 734, 698, 564, 462.
4.1.18. N-[2-(Na-Benzyloxycarbonyl-Nb-tert-butoxycar-
bonyl-hydrazino)ethyl]-N-[(thymin-1-yl)acetyl]glycine
(23). Compound 2 (1.00 g, 1.83 mmol) was dissolved in 2 M
KOH aq (30 mL) and the solution was stirred for 1 h at rt.
The pH was then adjusted to 2–3 with 1 M aq HCl. A white
precipitate was observed. The mixture was extracted with
CH2Cl2 (3ꢁ70 mL), and the organic phases were combined
and dried over Na2SO4, filtered and the filtrate concentrated
to dryness to afford 23 (927 mg, 95%) as a white solid:
1
mp¼147 ꢀC (dec); H NMR (300 MHz, CDCl3) (two ro-
tamers): d 9.80 (br s, 1H), 9.30 (br s, 1H), 7.39–7.28 (m,
5H), 7.08 (ma.) and 7.05 (mi.) (s, 1H), 5.18 (s, 2H), 4.15
(s, 2H), 4.11 (s, 2H), 3.66 (m, 2H), 3.63 (m, 2H), 1.92 (s,
3H), 1.37 (br s, 9H); 13C NMR (75 MHz, CDCl3): d 171.6,
168.3, 167.8, 164.5, 155.1, 151.4, 141.7, 135.7, 128.4,
110.5, 81.5, 67.5, 48.2, 47.9, 47.5, 46.2, 27.9, 12.0; mass
spectrum FAB m/z 556 (M+Na)+; IR (Nujol, cmꢂ1): 3515,
3263, 1714, 1694, 1669, 1412, 1252, 1215, 1163, 1082,
1045, 1025, 963, 906, 841, 783, 756, 736, 698.
1
Rf¼0.29, 65%) as a white solid: mp¼95–100 ꢀC (dec); H
NMR (300 MHz, CDCl3) (mixture of rotamers): d 7.40–
7.24 (m, 5H), 7.05–6.95 (m, 2H), 5.22–5.07 (m, 2H),
4.52–3.77 (m, 8H), 3.73–3.13 (m, 11H), 1.85–1.82 (m,
6H), 1.42 (br s, 9H); 13C NMR (50 MHz, CDCl3) (some ro-
tamers not completely attributed are present): d 169.7,
168.1–167.2 (3C q. ov.), 165.6–156.3 (4C q. ov.), 151.5
(2C q. ov.), 141.6–141.2 (2 ]CH ov.), 135.6, 128.4 (5CH
arom. ov.), 110.6 (2 ]C q. ov.), 79.8, 68.3, 53.4 (mi.) and
52.3 (ma.), 49.5–46.6 (7CH2 ov.), 38.5, 28.4, 12.2 (2CH3
ov.); mass spectrum ESI m/z 836.3181 (C36H47F3N9O13+Na
requires 836.3185); IR (Nujol, cmꢂ1): 3416, 1712, 1505,
1263, 1166, 721.
4.1.19. N-[2-(Nb-Benzyloxycarbonyl-Na-tert-butoxycar-
bonyl-hydrazino)ethyl]-N-[(thymin-1-yl)acetyl]glycine
(24). Compound 5 (200 mg, 0.37 mmol) was dissolved in
2 M aq KOH (10 mL) and the solution was stirred for 1 h
at rt. The pH was then adjusted to 2–3 with 1 M aq HCl. A
white precipitate was observed. The mixture was extracted
with CH2Cl2 (3ꢁ20 mL), and the organic phases were com-
bined and dried over Na2SO4, filtered and the filtrate concen-
trated to dryness to afford 24 (185 mg, 95%) as a white solid:
4.1.17. [Boc-aeg(T)PNA] [Na-Cbz-hyd(T)PNA-
COOCH3] (22). Compounds 32 (230 mg, 0.60 mmol) and
25 (304 mg, 0.54 mmol) were dissolved in dry DMF
(1.5 mL) with stirring. DhbtOH (97 mg, 0.60 mmol) and
DIEA (204 mL, 154 mg, 1.19 mmol) were added. The mix-
ture was then cooled to 0 ꢀC in an ice bath. EDC$HCl
(114 mg, 0.60 mmol) was added portionwise. The reaction
was allowed to warm to rt and the pH was adjusted to 9
with DIEA (140 mL). The mixture was stirred for 24 h and
then concentrated to dryness in vacuo. The residue was dis-
solved in water (20 mL) and ethyl acetate (30 mL). The or-
ganic layer was washed with 0.1 M aq KHSO4 (2ꢁ15 mL),
water (2ꢁ15 mL), satd aq NaHCO3 (2ꢁ20 mL) and brine
(2ꢁ15 mL). All of the aqueous phases were combined and
extracted with ethyl acetate (3ꢁ20 mL). These organic
phases were combined with the first and dried over
Na2SO4. The organic phase was filtered and concentrated
to dryness to afford 324 mg of the crude product as a yellow
solid. Column chromatography on silica gel (ethyl acetate/
MeOH 8:2) afforded 22 (254 mg, Rf¼0.28, 56%) as a white
solid: mp¼100–120 ꢀC (dec); 1H NMR (300 MHz, CDCl3)
(mixture of rotamers): d 7.36–7.32 (m, 5H), 7.14–6.90 (m,
2H), 5.18 (ma.) and 5.17 (mi.) (m, 2H), 4.51–3.80 (m,
8H), 3.80–3.00 (m, 11H), 1.92–1.83 (m, 6H), 1.42 (br s,
9H); 13C NMR (50 MHz, CDCl3) (some rotamers not com-
pletely assigned are present): d 171.4, 169.6–167.3 (3C q.
ov.), 165.5–164.7 (4C q. ov.), 151.5 (2C q. ov.), 143.1–
139.5 (2 ]CH ov.), 135.5, 130.1–126.9 (5CH arom. ov.),
mp¼103–110 ꢀC (dec); H NMR (300 MHz, CDCl3) (two
1
rotamers): d 8.99 (br s, 1H), 7.36 (m, 5H), 7.07 (ma.) and
7.02 (mi.) (s, 1H), 5.14 (s, 2H), 4.49 (s, 2H), 4.13 (s, 2H),
3.89 (m, 2H), 3.60 (m, 2H), 1.85 (s, 3H), 1.44 (s, 9H); 13C
NMR (75 MHz, CDCl3): d 172.2, 167.5, 164.2, 156.3,
156.0, 151.0, 141.0 and 142.0, 135.9, 128.1–129, 110.7,
81.0, 68.1, 49.0, 48.5, 48.4, 46.2, 28.3, 12.3; mass spectrum
ESI m/z 556 (M+Na)+; IR (thin film, CH2Cl2, cmꢂ1): 3474,
3264, 2614, 1694, 1681, 1471, 1368, 1286, 1217, 1085,
1049, 1021, 967, 787, 756.
4.1.20. Methyl-N-[2-(Na-benzyloxycarbonyl-hydr-
azino)ethyl]-N-[(thymin-1-yl)acetyl]glycinate trifluoro-
acetic salt (25). Compound 2 (1.70 g, 3.11 mmol) was
dissolved in
a solution of TFA (7.09 g, 4.8 mL,
62.16 mmol) at 40% by weight in CH2Cl2 (8 mL) under vig-
orous stirring. Gas formation was observed. The reaction was
stirred overnight. The solution was concentrated in vacuo to
an orange oil. The oil was stirred in diethyl ether for 1 h at rt
and a white precipitatewas obtained. Centrifugation afforded
1
25 (1.35 g, 77%) as a white solid: mp¼115 ꢀC (dec); H
NMR (300 MHz, DMSO-d6) (mixture of rotamers): d 9.90
(br s, 1H), 7.38–7.33 (m, 6H), 5.13 (ma.) and 5.09 (mi.) (s,
2H), 4.69 (mi.) and 4.67 (ma.) (m, 2H), 4.50–4.25 (m, 2H),
4.13 (m, 2H), 3.72 (m, 2H), 3.62 (br s, 3H), 1.76 (s, 3H);
13C NMR (75 MHz, DMSO-d6) (mixture of rotamers):
d 170.0, 167.8, 164.8, 164.5, 151.4, 142.4, 135.5, 128.8–
128.2, 108.5, 66.1, 49.5, 48.2, 47.1, 46.6, 46.0, 12.2; mass