1420 J ournal of Medicinal Chemistry, 2004, Vol. 47, No. 6
Lee et al.
2H); 13C NMR (CDCl3): 165.5, 162.5, 160.6, 149.9, 148.5, 140.3,
137.8, 129.9, 128.7, 128.5, 128.2, 127.2, 126.7, 124.3, 123.5,
121.8, 119.1, 115.7, 115.3, 114.7, 114.2, 54.9, 48.9, 47.9, 25.5.
Anal. Calcd for C25H22FN3 (383.46): C, 78.30; H, 5.78; N, 10.96.
Found: C, 78.73; H, 5.75; N, 11.08.
N-(1-Ben zyl-2,3-d ih yd r o-1H-p yr r olo[2,3-b]q u in olin -4-
yl)-2-p h en yla ceta m id e h yd r och lor id e Sa lt (P GP -4008‚
HCl). PGP-4008 (400 mg) was suspended in 1M HCl in ether
(8 mL) and the mixture was stirred at room temperature for
12 h before the solvent was removed with nitrogen flushing.
The residue was washed with 10% EtOAc in hexane twice and
dried in vacuo to yield the yellowish solid, PGP-4008‚HCl salt,
470 mg (Yield 99%). 1H NMR (DMSO-d6): 11.03 (s, 1H), 7.20-
8.20 (m, 14H), 5.13 (s, 2H), 3.89 (s, 2H), 3.74 (t, 2H), 2.94 (t,
2H); 13C NMR (DMSO-d6): 168.5, 155.7, 138.4, 135.4, 134.2,
130.7, 129.1, 128.9 (2C), 128.6 (2C), 128.1 (2C), 128.0 (2C),
127.8, 126.4, 124.2, 123.6, 122.5, 119.0, 118.0, 50.0, 49.5, 42.2,
24.8.
1-Ben zyl-2,3-dih ydr o-1H-pyr r olo[2,3-b]qu in olin -4-yl 3,5-
d im eth oxyben zyla m in e (34). Yield 84%; mp 133-135 °C;
IR (KBr): 3420, 1621, 1509, 1218 cm-1 1H NMR (CDCl3):
;
6.57-8.15 (m, 12H), 4.71 (s, 2H), 4.13 (s, 2H), 3.67 (s, 6H),
3.23 (t, 2H), 2.56 (t, 2H); 13C NMR (CDCl3): 162.1, 160.6(2C),
149.5, 149.0, 141.4, 139.2, 1291, 128.4(2C), 128.2(2C), 127.2,
126.5, 123.7, 121.7, 121.5, 119.8, 106.6, 106.3, 99.6, 55.6(2C),
55.2, 48.8, 47.9, 25.5. Anal. Calcd for C27H27N3O2 (425.52): C,
76.21; H, 6.40; N, 9.87. Found: C, 76.23; H, 6.36; N, 9.50.
In Vitr o Cytotoxicity Assa y. MCF-7 and NCI/ADR cells
were obtained from the Division of Cancer Treatment of the
National Cancer Institute.39 MCF-7/VP cells were provided by
Drs. Schneider and Cowan.40 Cells were maintained in RPMI
1640 (Life Technologies, Inc., Rockville, MD) with L-glutamine
containing 10% FBS and 50 µg/mL gentamicin at 37 °C and
5% CO2. Cells were seeded into 96-well tissue culture dishes
at approximately 20% confluency and allowed to recover and
attach for 24 h. Cells were then treated in triplicate with
varying concentrations of test modulators in the presence or
absence of a cytotoxic drug for 48 h. The number of surviving
cells remaining in each well was quantified with the sulfo-
rhodamine B (SRB) colorimetric assay.45 Briefly, cells were
washed with phosphate-buffered saline and fixed to the plate
with 10% trichloroacetic acid. The cells were then washed with
water and stained with 0.4% SRB in 1% acetic acid. Cells were
then rinsed with 1% acetic acid, and 10 mM Tris buffer was
added to dissolve the remaining SRB. The absorbance of each
well was determined with a PerkinElmer HTS 7000 Plus
Gen er a l P r oced u r e for th e Syn th esis of Com p ou n d s
27 a n d 35-38. A solution of 18 (1 mmol) in DMF (10 mL)
was added dropwise to a suspension of sodium hydride (1
mmol) in DMF (20 mL) at 0 °C under nitrogen. After 5 min,
an acyl chloride was slowly added via syringe over a 20 min
period maintaining a temperature of -5 °C. The reaction
mixture was stirred at room temperature for 1-4 h (Table 3)
and then filtered through silica gel. The solvent was removed
under reduced pressure, and the residue was purified by flash
chromatography (chloroform:methanol, 100:1) using silica gel
to give the corresponding product (Table 3).
N-1-Ben zyl-2,3-d ih yd r o-1H-p yr r olo[2,3-b]qu in olin -4-yl-
2-p ip er id in -1-yla ceta m id e (27). Yield 49%; mp 220-222 °C;
IR (KBr): 3410, 1699, 1660, 1505 cm-1; 1H NMR (DMSO-d6):
7.05-7.78 (m, 9H), 4.60 (s, 2H), 4.46 (s, 2H), 3.46 (m, 2H), 3.10
(m, 4H), 2.86 (t, 2H), 1.72 (m, 4H), 1.52 (m, 2H); 13C NMR
(DMSO-d6): 168.6, 163.6, 149.6, 145.9, 139.5, 129.9(2C),
129.7(2C), 129.5, 128.6, 126.6, 122.7, 121.9, 118.4, 102.4, 60.6,
54.5(2C), 49.5(2C), 24.1, 23.9(2C), 22.7. Anal. Calcd for
BioAssay plate reader at
a wavelength of 570 nm. The
percentage of cells killed is calculated as the percentage
decrease in SRB binding as compared with control cultures.
Reversal of Pgp-mediated MDR was indicated if the compound
enhanced the toxicity of vinblastine toward the NCI/ADR cells.
The Pgp Antagonism Score was calculated as the percentage
of surviving NCI/ADR cells in the absence of vinblastine
divided by the percentage of surviving NCI/ADR cells in the
presence of vinblastine. Control cultures included equivalent
amounts of ethanol (1%, as the solvent control), which did not
modulate the growth or drug-sensitivity of these cells. To
assess the toxicity of the compounds toward drug-sensitive
cells, the effects of the test modulators on the growth of drug-
sensitive MCF-7 cells were determined by the same methods.
Reversal of MRP1-mediated MDR was indicated if the com-
pound enhanced the toxicity of vincristine toward MCF-7/VP
cells. The MRP1 Antagonism Score was calculated as the
percentage of surviving MCF-7/VP cells in the absence of
vincristine divided by the percentage of surviving MCF-7/VP
cells in the presence of vincristine.
In Vitr o Dr u g Accu m u la tion Assa y. Cells were seeded
in 24-well tissue culture dishes at approximately 25% conflu-
ency and allowed to recover and grow to near confluency,
typically 3-4 days. Media was aspirated and replaced with
serum-free media, and varying concentrations of PGP-4008
were added to the wells and cultures were incubated for 30
min at 37 °C. Approximately 0.1 µCi of [3H]paclitaxel (75 Ci/
mmol) or [3H]vinblastine (7.3 Ci/mmol) (Moravek Biochemicals,
Brea, CA) was then added per well, and the cultures were
incubated for 60 min at 37 °C. Radioactive media was
aspirated and cells were rapidly washed twice with ice-cold
phosphate-buffered saline. Intracellular [3H]drug was solu-
bilized with 1% sodium dodecyl sulfate in water and quantified
by liquid scintillation counting using UniverSol (ICN, Costa
Mesa, CA) as previously described.38
C
25H28N4O‚HCl (437.02): C, 68.70; H, 6.70; N, 12.81. Found:
C, 68.81; H, 6.43; N, 12.76.
N-1-Ben zyl-2,3-d ih yd r o-1H-p yr r olo[2,3-b]qu in olin -4-yl-
2-p h en yla ceta m id e (35 or P GP -4008). Yield 52%; mp 157-
159 °C; IR (KBr): 3431, 2959, 1690, 1665, 1507, 1310 cm-1
;
1H NMR (DMSO-d6): 7.29-8.37 (m, 14H), 5.17 (s, 2H), 3.93
(s, 2H), 3.77 (t, 2H), 2.97 (t, 2H); 13C NMR (DMSO-d6): 169.5,
156.5, 139.4, 137.2, 136.4, 135.1, 131.7, 129.9, 129.5(2C),
129.1(2C), 129.0(2C), 128.8(2C), 127.4, 125.3, 124.6, 123.6,
119.9, 118.8, 51.0, 50.5, 43.1, 25.8. Anal. Calcd for C26H23N3O‚
H2O (411.50): C, 75.88; H, 6.13; N, 10.21. Found: C, 76.29;
H, 6.41; N, 9.82. The purity of 35 was confirmed to be >95%
by HPLC analyses as described below.
N-(1-Ben zyl-2,3-d ih yd r o-1H-p yr r olo[2,3-b]q u in olin -4-
yl)-2-flu or o-6-tr iflu or om eth ylben za m id e (36). Yield 55%;
mp 189-191 °C; IR (KBr): 3427, 2933, 1691, 1628, 1119 cm-1
;
1H NMR (DMSO-d6): 7.35-8.25 (m, 12H), 5.02 (s, 2H), 3.66
(t, 2H), 2.98 (t, 2H); 13C NMR (DMSO-d6): 168.5, 165.3, 164.8,
161.2, 156.4, 148.4, 138.6, 136.4, 134.5, 131.1, 129.3(2C),
128.7(2C), 128.3, 124.1, 123.3, 122.5, 119.4, 119.1, 118.6, 116.3,
99.7, 50.3, 49.8, 23.8. Anal. Calcd for C26H19F4N3O (465.44):
C, 67.09; H, 4.11; N, 9.03. Found: C, 67.45; H, 4.19; N, 9.15.
N-(1-Ben zyl-2,3-d ih yd r o-1H-p yr r olo[2,3-b]q u in olin -4-
yl)-4-flu or o-3-tr iflu or om eth ylben za m id e (37). Yield 45%;
mp 195-197 °C; IR (KBr): 3435, 1691, 1626, 1375, 1118 cm-1
;
1H NMR (DMSO-d6): 7.25-8.62 (m, 12H), 4.95 (s, 2H), 3.37
(t, 2H), 3.00 (t, 2H); 13C NMR (DMSO-d6): 169.0, 165.0, 164.9,
161.2, 155.4, 147.9, 138.8, 136.0, 134.3, 131.0, 129.1, 128.7(2C),
128.2(2C), 124.1, 123.1, 122.5, 119.4, 119.1, 118.3, 116.7, 99.5,
50.8, 49.5, 23.5. Anal. Calcd for C26H19F4N3O (465.44): C,
67.09; H, 4.11; N, 9.03. Found: C, 67.50; H, 4.05; N, 9.18.
N-(1-Ben zyl-2,3-d ih yd r o-1H-p yr r olo[2,3-b]q u in olin -4-
yl)-2,3,6-tr iflu or oben za m id e (38). Yield 53%; mp 160-162
°C; IR (KBr): 3430, 1689, 1378, 1119 cm-1; 1H NMR (DMSO-
d6): 7.33-8.31 (m, 11H), 5.14 (s, 2H), 3.84 (t, 2H), 3.13 (t, 2H);
13C NMR (DMSO-d6): 168.9, 165.3, 164.8, 161.2, 159.2, 159.1,
159.0, 138.2, 135.6, 132.3, 130.0, 129.4, 129.3, 125.9, 125.6,
124.5, 120.9, 120.5, 120.2, 119.6, 113.9, 113.4, 50.7, 49.8, 23.6.
Anal. Calcd for C25H18F3N3O (433.43): C, 69.28; H, 4.19; N,
9.69. Found: C, 69.28; H, 4.07; N, 9.62.
In Vivo Toxicity Assa y. Animal care and treatments were
in accordance with guidelines and regulations of the Institu-
tional Animal Care and Use Committee of The Penn State
College of Medicine. Female Swiss-Webster mice (Charles
River Laboratories, Wilmington, MA), 6-8 weeks old, were
acclimated to their environment during quarantine for ap-
proximately 10 days before being released into the mouse