Journal of the American Chemical Society
Communication
Author Contributions
Table 1. AmiG Kinetic Parameters for Different Substrates
⊥R.C. and H.Z. contributed equally.
a
Toward 1 and 2 as Acceptors
Notes
acceptor
KM (μM)
kcat (min−1
)
kcat/KM (mM−1 min−1
)
The authors declare no competing financial interest.
1
2
15.8 1.9
16.7 2.5
1.38 0.08
0.84 0.04
87.4
50.6
ACKNOWLEDGMENTS
■
b
Toward TDP-D-viosamine and TDP-D-glucose as Donors
Financial support was provided in part by NNSFC (31125001,
31170708, 30870060), MOST (2010CB833805), and CAS
(KZCX2-YW-JC202, KSCX2-EW-G-12). C.Z. is a scholar of the
“100 Talents Project” of CAS (08SL111002). We are grateful for
the analytical facilities at SCSIO.
donor
KM (mM)
kcat (min−1
)
kcat/KM (mM−1 min−1
)
TDP-D-viosamine
TDP-D-glucose
1.99 0.29
2.67 0.18
1.59 0.08
0.56 0.03
0.80
0.21
a
b
With saturating TDP-D-viosamine (10 mM) as the donor. With
saturating 1 (100 μM) as the acceptor.
REFERENCES
■
(1) (a) Lairson, L. L.; Henrissat, B.; Davies, G. J.; Withers, S. G. Annu.
Rev. Biochem. 2008, 77, 521. (b) Thibodeaux, C. J.; Melanco
basis of the kcat/KM values (Table 1), indicating that the
attachment of the terminal (+)-α-methylserine might occur prior
to amosamine transfer in 1a biosynthesis. We also determined
the catalytic parameters of AmiG toward the surrogate sugar
donor TDP-D-glucose using 1 as a saturating acceptor (Table 1
and Figure S22). Interestingly, AmiG displayed very close KM
values for TDP-D-viosamine (1.99 mM) and TDP-D-glucose
(2.67 mM). However, TDP-D-viosamine was apparently a better
donor substrate than TDP-D-glucose on the basis of their kcat/KM
values (Table 1). Following established methods,16 we also
determined the equilibrium constant for the AmiG-catalyzed
reaction of 1 and TDP-D-viosamine to give 1c to be Keq = 120
(Figure S23), which differs from the reported values for GtfE
(4.5)2b and OleD (156).16 Although GT reverse catalysis
displays apparent beauty for sugar nucleotide synthesis,2g,h we
realize that the making of sugar nucleotides by GT reverse
catalysis is yet not practical in some cases, especially when the GT
displays a relative large Keq. It turned out to be difficult for us to
harvest a large amount of TDP-D-amosamine via the TDP-
mediated AmiG reverse reaction using 2a as a substrate.
In summary, we have validated AmiH as the N-methyltransfer-
ase and AmiG as the amosaminyltransferase in amicetin
biosynthesis. Notably, we have shown that the retaining GT
AmiG is capable of reverse catalysis and is amenable to sugar
exchange and aglycon exchange reactions in a manner analogous
to inverting GTs,2 despite the distinct catalytic mechanisms of
retaining and inverting GTs. Unlike the clearly established SN2
replacement mechanism of inverting GTs, the catalytic
mechanism of retaining GTs remains unclear, with proposals
of a double displacement or SNi mechanism.1 In addition, AmiG
was demonstrated to have a certain substrate flexibility by
utilizing TDP-D-amosamine, TDP-D-demethylamosamine,
TDP-D-viosamine, T(U)DP-D-glucose, TDP-4,6-dideoxy-4-
keto-D-glucose, and TDP-2-deoxy-D-glucose as sugar donors.
Given the kinetic advantage of 1 over 2 in AmiG catalysis, we
conclude that amosaminylation by AmiG might tailor 1a
biosynthesis. This study extends the reaction reversibility to a
retaining GT and warrants further mechanistic investigations.
̧
n, C. E., III;
Liu, H.-w. Angew. Chem., Int. Ed. 2008, 47, 9814. (c) Williams, G. J.;
Thorson, J. S. Adv. Enzymol. Relat. Areas Mol. Biol. 2009, 76, 55.
(2) (a) Minami, A.; Kakinuma, K.; Eguchi, T. Tetrahedron Lett. 2005,
46, 6187. (b) Zhang, C.; Griffith, B. R.; Fu, Q.; Albermann, C.; Fu, X.;
Lee, I. K.; Li, L.; Thorson, J. S. Science 2006, 313, 1291. (c) Zhang, C.;
Albermann, C.; Fu, X.; Thorson, J. S. J. Am. Chem. Soc. 2006, 128, 16420.
(d) Zhang, C.; Fu, Q.; Albermann, C.; Li, L. J.; Thorson, J. S.
ChemBioChem 2007, 8, 385. (e) Zhang, C.; Bitto, E.; Goff, R. D.; Singh,
S.; Bingman, C. A.; Griffith, B. R.; Albermann, C.; Phillips, G. N.;
Thorson, J. S. Chem. Biol. 2008, 15, 842. (f) Zhang, C.; Moretti, R.; Jiang,
J. Q.; Thorson, J. S. ChemBioChem 2008, 9, 2506. (g) Gantt, R. W.;
Peltier-Pain, P.; Cournoyer, W. J.; Thorson, J. S. Nat. Chem. Biol. 2011,
7, 685. (h) Gantt, R. W.; Peltier-Pain, P.; Singh, S.; Zhou, M.; Thorson, J.
S. Proc. Natl. Acad. Sci. U.S.A. 2013, 110, 7648.
(3) (a) Zhang, H.; White-Phillip, J. A.; Melanco̧ n, C. E., III; Kwon, H.-
j.; Yu, W.-l.; Liu, H.-w. J. Am. Chem. Soc. 2007, 129, 14670. (b) Fang, J.;
Zhang, Y.; Huang, L.; Jia, X.; Zhang, Q.; Zhang, X.; Tang, G.; Liu, W. J.
Bacteriol. 2008, 190, 6014. (c) Li, S.; Xiao, J.; Zhu, Y.; Zhang, G.; Yang,
C.; Zhang, H.; Ma, L.; Zhang, C. Org. Lett. 2013, 15, 1374.
(4) Kim, C. G.; Lamichhane, J.; Song, K. I.; Nguyen, V. D.; Kim, D. H.;
Jeong, T. S.; Kang, S. H.; Kim, K. W.; Maharjan, J.; Hong, Y. S.; Kang, J.
S.; Yoo, J. C.; Lee, J. J.; Oh, T. J.; Liou, K.; Sohng, J. K. Arch. Microbiol.
2008, 189, 463.
(5) (a) Yokoyama, K.; Yamamoto, Y.; Kudo, F.; Eguchi, T.
ChemBioChem 2008, 9, 865. (b) Fan, Q.; Huang, F.; Leadlay, P. F.;
Spencer, J. B. Org. Biomol. Chem. 2008, 6, 3306.
(6) Hofmann, C.; Boll, R.; Heitmann, B.; Hauser, G.; Durr, C.; Frerich,
A.; Weitnauer, G.; Glaser, S. J.; Bechthold, A. Chem. Biol. 2005, 12, 1137.
(7) Zhang, G.; Zhang, H.; Li, S.; Xiao, J.; Zhang, G.; Zhu, Y.; Niu, S.; Ju,
J.; Zhang, C. Appl. Environ. Microbiol. 2012, 78, 2393.
(8) Carrasco, L.; Vazquez, D. Med. Res. Rev. 1984, 4, 471.
(9) Flynn, E. H.; Hinman, J. W.; Caron, E. L.; Woolf, D. O. J. Am. Chem.
Soc. 1953, 75, 5867.
(10) (a) Haskell, T. H.; Ryder, A.; Frohardt, R. P.; Fusari, S. A.;
Jakubowski, Z. L.; Bartz, Q. R. J. Am. Chem. Soc. 1958, 80, 743.
(b) Evans, J. R.; Weare, G. J. Antibiot. 1977, 30, 604.
(11) Hu, T.; Zhang, G.; Zhu, Y.; Li, S.; Zhang, H.; Zhang, G.; Yang, X.;
Ju, J.; Zhang, C. Acta Microbiol. Sin. 2012, 52, 214.
(12) Summers, R. G.; Donadio, S.; Staver, M. J.; Wendt-Pienkowski, E.;
Hutchinson, C. R.; Katz, L. Microbiology 1997, 143, 3251.
(13) Konishi, M.; Naruishi, M.; Tsuno, T.; Tsukiura, H.; Kawaguchi,
H. J. Antibiot. 1973, 26, 757.
ASSOCIATED CONTENT
* Supporting Information
(14) Borisova, S. A.; Zhao, L.; Melanco
w. J. Am. Chem. Soc. 2004, 126, 6534.
(15) Howard-Jones, A. R.; Kruger, R. G.; Lu, W.; Tao, J.; Leimkuhler,
C.; Kahne, D.; Walsh, C. T. J. Am. Chem. Soc. 2007, 129, 1008.
(16) Quiros, L. M.; Carbajo, R. J.; Brana, A. F.; Salas, J. A. J. Biol. Chem.
2000, 275, 11713.
̧ n, C. E., III; Kao, C.-L.; Liu, H.-
■
S
Experimental procedures, characterization data for new com-
pounds, and determination of AmiG kinetic parameters. This
material is available free of charge via the Internet at http://pubs.
AUTHOR INFORMATION
Corresponding Author
■
D
dx.doi.org/10.1021/ja401016e | J. Am. Chem. Soc. XXXX, XXX, XXX−XXX