N-Phenyl Nicotinamides as Inducers of Apoptosis
J ournal of Medicinal Chemistry, 2003, Vol. 46, No. 12 2479
from Molecular Probes (Eugene, OR). Human leukemia cancer
cells (J urkat cells), human breast cancer cells T47D and ZR75-
1, human colon cancer cells DLD-1, human uterus sarcoma
MES-SA cell, and human uterus sarcoma doxorubicin-resistant
MES-SA/DX5 cells were obtained from American Type Culture
Collection (Manasas, VA). Tubulin was obtained from Cytosk-
eleton (Boulder, CO).
for preparation of compound 10 (52%). 1H NMR (CDCl3): 12.54
(s, 1H), 8.92 (d, J ) 9.3, 1H), 8.73 (d, J ) 3.9, 1H), 8.28 (d, J
) 6.9, 1H), 7.95-7.90 (m, 1H), 7.74 (d, J ) 3.0, 1H), 7.54-
7.50 (m, 1H), 7.31-7.27 (m, 1H), 4.11 (q, J ) 6.9, 2H), 1.46 (t,
J ) 6.9, 3H). Anal. (C14H13N3O4) C, H, N.
Compound 2 and 6 were obtained from Chembridge (San
Diego, CA):
5-Br om o-N-(4-m eth oxy-2-n itr op h en yl)p yr id in e-3-ca r -
boxa m id e (2). H NMR (CDCl3): 11.12 (s, 1H), 9.11 (d, J )
1.8, 1H), 8.89 (d, J ) 2.4, 1H), 8.14 (d, J ) 9.6, 1H), 8.42 (t, J
) 2.1, 1H), 7.76 (d, J ) 3.0, 1H), 7.33 (dd, J ) 3.0, 9.3, 1H),
3.90 (s, 3H).
N-(4-Eth oxy-2-n itr oph en yl)pyr idin e-3-car boxam ide (6).
1H NMR (CDCl3): 11.12 (s, 1H), 9.24 (d, J ) 1.8, 1H), 8.85 (d,
J ) 9.3, 1H), 8.83 (dd, J ) 1.2, 5.1, 1H), 8.29-8.24 (m, 1H),
7.74 (d, J ) 3.0, 1H), 7.51-7.47 (m, 1H), 7.31 (dd, J ) 3.0,
9.3, 1H), 4.11 (q, J ) 6.9, 2H), 1.47 (t, J ) 6.9, 3H).
2-Ch lor o-N-(4-m eth oxy-2-n itr op h en yl)p yr id in e-3-ca r -
boxa m id e (3). A mixture of 2-chloronicotinoyl chloride (200
mg, 1.14 mmol), 4-methoxy-2-nitroaniline (191 mg, 1.14 mmol),
and triethylamine (160 µL) in THF (10 mL) was refluxed for
20 h. The mixture was cooled to room temperature, and the
solid was filtered. The filtrate was rotary evaporated to
dryness, and the resulting residue was purified by flash
column chromatography (40% ethyl acetate in hexanes) to
1
1
obtain a yellow solid (192 mg, 55%). H NMR (CDCl3): 10.76
(s, 1H), 8.78 (d, J ) 9.3, 1H), 8.58-8.55 (m, 1H), 8.13-8.09
(m, 1H), 7.73 (d, J ) 3.0, 1H), 7.45-7.40 (m, 1H), 7.34-7.28
(m, 1H), 3.90 (s, 3H). Anal. (C13H10ClN3O4) C, H, N.
The following compounds were prepared by a procedure
similar to that described for the preparation of compound 3.
N -(4-Me t h oxy-2-n it r op h e n yl)p yr id in e -3-ca r b oxa m -
id e (1). The title compound was prepared from nicotinoyl
chloride and 4-methoxy-2-nitroaniline. 1H NMR (CDCl3): 11.13
(s, 1H), 9.24 (d, J ) 2.1, 1H), 8.86 (d, J ) 9.3, 1H), 8.84 (dd, J
) 1.5, 5.1, 1H), 8.29-8.25 (m, 1H), 7.76 (d, J ) 3.0, 1H), 7.49
(dd, J ) 4.8, 8.1, 1H), 7.33 (dd, J ) 3.0, 9.3, 1H), 3.90 (s, 3H).
Anal. (C13H11N3O4) C, H, N.
Ca sp a se Activa tion Assa y (EC50). Human breast cancer
cell lines T47D, ZR75-1, and the human colon cancer cell line
(DLD-1) were grown according to media component mixtures
designated by American Type Culture Collection in RPMI-1640
+ 10% FCS in a 5% CO2-95% humidity incubator at 37 °C.
Cells were harvested using trypsin and washed at 600g and
resuspended at 0.65 × 106 cells/mL into RPMI media + 10%
FCS. An aliquot of 22.5 µL of cells was added to a well of a
384-well microtiter plate containing 2.5 µL of 0.05 to 100 µM
of test compound in RPMI-1640 containing 25 mM HEPES
media solution with 10% DMSO (0.005 to 10 µM final). An
aliquot of 22.5 µL of cells was added to a well of a 384-well
microtiter plate containing 2.5 µL of RPMI-1640 media solu-
tion with 10% DMSO and without test compound as the control
sample. The samples were then incubated at 37°C for 24 h in
a 5% CO2-95% humidity incubator. After incubation, the
samples were removed from the incubator and 25 µL of a
solution containing 14 µM of N-(Ac-DEVD)-N′-ethoxycarbonyl-
R110 fluorogenic substrate, 20% sucrose, 20 mM DTT, 200 mM
NaCl, 40 mM Na PIPES buffer pH 7.2, and 500 µg/mL
lysolecithin was added. The samples were incubated at room
temperature. Using a fluorescent plate reader (Model Spec-
trafour Plus Tecan), an initial reading (T ) 0) was made
approximately 1-2 min after addition of the substrate solution,
employing excitation at 485 nm and emission at 525 nm, to
determine the background fluorescence of the control sample.
After the 3 h incubation, the samples were read for fluores-
cence as above (T ) 3 h).
6-Ch lor o-N-(4-m eth oxy-2-n itr op h en yl)p yr id in e-3-ca r -
boxa m id e (4). The title compound was prepared from 6-chlo-
1
ronicotinoyl chloride and 4-methoxy-2-nitroaniline (54%). H
NMR (CDCl3): 11.13 (s, 1H), 9.01 (d, J ) 2.7, 1H), 8.83 (d, J
) 9.3, 1H), 8.24-8.20 (m, 1H), 7.76 (d, J ) 2.7, 1H), 7.52 (d,
J ) 8.7, 1H), 7.35-7.31 (m, 1H), 3.90 (s, 3H). Anal. (C13H10
ClN3O4) C, H, N.
-
N -(4-Me t h oxy-2-n it r op h e n yl)p yr id in e -4-ca r b oxa m -
id e (5). The title compound was prepared from isonicotinoyl
chloride and 4-methoxy-2-nitroaniline (40%). 1H NMR
(CDCl3): 10.79 (s, 1H), 8.83-8.81 (m, 2H), 7.85-7.83 (m, 2H),
7.61-7.55 (m, 2H), 7.40-7.36 (m, 1H), 3.87 (s, 3H). Anal.
(C13H11N3O4) H, N. C, calcd: 57.14; found: 57.93.
6-Ch lor o-N-(4-et h oxy-2-n it r op h en yl)p yr id in e-3-ca r -
boxa m id e (8). The title compound was prepared from 6-chlo-
ronicotinoyl chloride and 4-ethoxy-2-nitroaniline (34%). 1H
NMR (CDCl3): 11.13 (s, 1H), 9.01 (d, J ) 2.4, 1H), 8.82 (d, J
) 9.3, 1H), 8.24-8.20 (m, 1H), 7.74 (d, J ) 3.0, 1H), 7.51 (d,
J ) 7.8, 1H), 7.34-7.30 (m, 1H), 4.11 (q, J ) 6.9, 2H), 1.47 (t,
J ) 6.9, 3H). Anal. (C14H12ClN3O4) C, H, N.
4-Ch lor o-N-(4-eth oxy-2-n itr oph en yl)ben zam ide (9). The
title compound was prepared from 4-chlorobenzoyl chloride
and 4-ethoxy-2-nitroaniline (57%). 1H NMR (CDCl3): 11.10
(brs, 1H), 8.86 (d, J ) 9.3, 1H), 7.93 (d, J ) 8.4, 2H), 7.73 (d,
J ) 3.0, 1H), 7.51 (d, J ) 8.4, 2H), 7.32-7.27 (m, 1H), 4.11 (q,
J ) 6.9, 2H), 1.46 (t, J ) 6.9, 3H). Anal. (C15H13ClN2O4) C, H,
N.
6-Met h yl-N-(4-et h oxy-2-n it r op h en yl)p yr id in e-3-ca r -
boxa m id e (10). A mixture of 6-methylnicotinic acid (1.01 g,
7.29 mmol) and cyanuric chloride (1.34 g, 7.29 mmol) in THF
(25 mL) was stirred at room temperature for 30 min, then a
solution of 4-ethoxy-2-nitroaniline (1.33 g, 7.29 mmol) in THF
(25 mL) and triethylamine (2 mL) was added. The mixture
was refluxed for 20 h, cooled to room temperature, and then
diluted with 1:1 of hexane:ethyl acetate (200 mL). The solution
was washed with water (2 × 100 mL) and brine (100 mL), dried
over Na2SO4, and evaporated. The residue was purified by
flash column chromatography (33% ethyl acetate in hexanes)
to obtain a yellow solid (707 mg, 32%). 1H NMR (CDCl3): 11.09
(s, 1H), 9.12 (d, J ) 2.1, 1H), 8.84 (d, J ) 9.6, 1H), 8.14 (dd, J
) 2.7, 8.1, 1H), 7.73 (d, J ) 3.3, 1H), 7.34-7.28 (m, 2H), 4.11
(q, J ) 6.9, 2H), 2.67 (s, 3H), 1.46 (t, J ) 6.9, 3H). Anal.
(C15H15N3O4) C, H, N.
Ca lcu la tion . The relative fluorescence unit values (RFU)
were used to calculate the sample readings as follows:
RFU(T)3h) - control RFU(T)0) ) net RFU(T)3h)
The activity of caspase activation was determined by the
ratio of the net RFU value for the test compound to that of
control samples. The EC50 (µM) was determined by a sigmoidal
dose-response calculation (XLFit3, IDBS), as the concentra-
tion of compound that produces the 50% maximum response.
The caspase activation activity (EC50) in three cancer cell lines,
T47D, ZR75-1, and DLD-1, are summarized in Table 1.
Mor p h ologica l Assessm en t of Nu clea r F r a gm en ta tion
of Ap op totic Cells. J urkat cells, grown and harvested as
above, were treated with 5 µM of compound 1 for 24 h followed
by staining of the nucleus with Syto16, a fluorescent DNA dye.
The cells were then observed under a fluorescent microscope
for chromosomal condensation and nuclear fragmentation (490
nm). The nuclei of J urkat cells treated with vehicle control
(DMSO) are seen to be round with dispersed chromatin that
is moderately stained with Syto16 (Figure 1A). In contrast,
J urkat cells treated with 5 µM of compound 1 have shrunken
and fragmented nuclei (Figure 1B), which is a hallmark of
caspase-mediated apoptosis, as well as condensed mitotic
spindles. These results corroborate the caspase activation
assays, showing that compound 1 can induce a key cellular
marker of apoptosis.
N-(4-Eth oxy-2-n itr oph en yl)pyr idin e-2-car boxam ide (7).
The title compound was prepared from picolinic acid and
4-ethoxy-2-nitroaniline by a procedure similar to that described
Cell Cycle An a lysis a n d Mea su r em en t of Ap op tosis.
T47D cells were maintained and harvested as described above.