Reductive ligation of RSNOs using proline ester substrates
C-M Park et al
5
128.12, 80.76, 66.37, 65.95, 47.72, 47.65, 31.83, 31.74, 28.24, 25.87. 31P NMR J = 8.5, 6.5, 2.2 Hz, 1H), 3.20 (m, 2H), 2.43 (dd, J = 12.7, 5.9 Hz, 1H),
(122 MHz, CDCl3) δ 49.64.
2.13–2.02 (m, 1H), 1.91 (m, 2H), 1.28 (s, 9H); 31P (122 MHz, CDCl3)
Compound 11: 1H NMR (300 MHz, CDCl3) δ 7.59–7.15 (m, 13H), δ 30.0; 13C NMR (75 MHz, CDCl3) δ 175.98, 132.67, 132.52, 132.39, 132.32,
7.07–6.95 (m, 2H), 4.47 (ddd, J = 8.3, 6.3, 3.8 Hz, 1H), 3.21 (dddd, J = 8.7, 132.19, 129.65, 129.25, 129.13, 129.08, 128.97, 121.40, 62.58, 48.91, 48.35,
7.5, 5.1, 1.0 Hz, 1H), 2.95 (dtd, J =9.4, 7.0, 2.4 Hz, 1H), 2.36–2.14 (m, 2H), 31.49, 28.92, 25.42, 25.33; MS (Maldi) m/z calcd for C21H28N2O2PS [M+H]+
2.09–1.93 (m, 1H), 1.83 (m, 1H); 31P NMR (122 MHz, CDCl3) δ 49.99; 403.1609, found 403.1604.
13C NMR (75 MHz, CDCl3) δ 174.0, 150.9, 138.8, 138.7, 138.6, 132.9, 132.7,
Compound 16g: 1H NMR (300 MHz, CDCl3)
δ 8.97 (s, 1H), 8.30
132.2, 131.9, 129.5, 129.0, 128.5, 128.3, 128.2, 125.9, 121.6, 65.6, 65.1, 47.8, (d, J = 8.3 Hz, 1H), 8.09–7.97 (m, 2H), 7.90–7.67 (m, 4H), 7.62–7.36
47.7, 32.0, 31.9, 25.9; MS (ESI) m/z calcd for C23H23NO2P [M+H]+ 376.1, (m, 9H), 5.02 (ddd, J = 8.3, 6.3, 4.3 Hz, 1H), 4.27–4.02 (m, 1H), 3.74
found 376.2.
(s, 3H), 3.32 (dd, J = 14.8, 6.4 Hz, 1H), 3.04 (m, 3H), 2.35–2.17 (m, 1H),
2.01–1.84 (m, 1H), 1.72 (m, 2H); 31P (122 MHz, CDCl3) δ 30.1; 13C NMR
(75 MHz, CDCl3) δ 176.84, 171.32, 167.73, 133.84, 132.72, 132.50, 132.37,
132.21, 132.07, 131.97, 129.21, 129.10, 128.93, 128.65, 127.91, 61.90, 52.96,
51.28, 48.72, 42.00, 30.95, 25.32; MS (ESI) m/z calcd for C28H30N3NaO5PS
[M+Na]+ 574.3, found 574.3.
Preparation of S-nitrosothiols
The thiol starting material (RSH, 0.2 mmol) was dissolved in 1 ml of MeOH
followed by the addition of 1 N HCl (1 ml) at room temperature. To this
solution was then added freshly prepared 1 N NaNO2 (1 ml) in water in dark
(total c = 0.07 M). The color of the reaction was immediately turned to red
(for primary and secondary RSNO) or green (for tertiary RSNO). The mixture
was stirred for 10–15 min at room temperature. Upon completion (monitored
by TLC), the RSNO product was directly extracted with cold diethyl ether
(1 ml× 3) in dark. The organic layers were collected and dried. The solvent was
removed to provide the RSNO product that was then used for the ligation
reaction without further purification.
Compound 16h: 1H NMR (300 MHz, CDCl3) δ 8.92 (d, J = 7.6 Hz, 1H), 8.44
(s, 1H), 7.75 (tdd, J = 12.0, 8.3, 1.4 Hz, 4H), 7.67–7.38 (m, 6H), 7.01
(d, J = 7.2 Hz, 3H), 6.97–6.85 (m, 3H), 5.38 (td, J = 9.5, 3.2 Hz, 1H), 4.63
(td, J = 8.3, 5.0 Hz, 1H), 4.07 (td, J = 7.0, 5.0 Hz, 1H), 3.67 (s, 3H), 3.42
(m, 1H), 3.27–2.99 (m, 3H), 2.84 (dd, J = 13.9, 8.9 Hz, 1H), 2.49 (dd, J = 14.1,
9.9 Hz, 1H), 2.23–2.10 (m, 2H), 2.08 (s, 3H), 2.02–1.76 (m, 3H); 31P
(122 MHz, CDCl3) δ 30.4; 13C NMR (75 MHz, CDCl3) δ 177.22, 171.75,
171.46, 171.04, 136.73, 132.65, 132.52, 132.33, 132.19, 129.31, 129.20, 129.10,
129.04, 128.93, 128.41, 126.81, 62.41, 54.36, 52.55, 49.93, 43.67, 37.95, 25.70,
23.40; MS (ESI) m/z calcd for C32H37N4NaO6PS [M+Na]+ 659.2, found 659.3.
Compound 16i: 1H NMR (300 MHz, CDCl3) δ 8.21 (d, J = 7.4 Hz, 1H), 7.80
(m, 5H), 7.45 (m, 6H), 7.19 (d, J = 8.1 Hz, 1H), 4.93 (m, 1H), 4.75 (m, 1H),
4.50 (m, 1H), 4.01 (ddd, J = 8.2, 5.9, 2.3 Hz, 2H), 3.75–3.57 (m, 3H), 3.29–3.11
(m, 2H), 2.40–2.24 (m, 1H), 2.10–2.03 (m, 1H), 1.98 (m, 3H), 1.92–1.81
(m, 4H), 1.47–1.29 (m, 3H); 31P (122 MHz, CDCl3) δ 30.4; 13C NMR
(75 MHz, CDCl3) δ 171.22, 170.56, 170.56, 170.08, 132.61, 132.57, 132.54,
132.51, 132.42, 132.37, 132.30, 132.24, 131.76, 131.52, 130.05, 129.84, 129.19,
129.10, 129.03, 128.93, 62.06, 62.02, 53.70, 52.63, 48.47, 48.06, 48.01, 42.04,
31.27, 31.19, 25.26, 25.17, 23.24, 17.97, 17.57; MS (ESI) m/z calcd for
C26H35N4NaO5PS [M+Na]+ 569.2, found 569.3.
General reductive ligation procedure
To the freshly prepared RSNO product was added a solution of 2 equivalent of
11 in 3:1 THF-aqueous buffer (pH 7.4, degassed by bubbling with argon). The
final concentration was ~ 0.1 M. The reaction was monitored by TLC and it was
usually completed within 15–30 min at room temperature. The reaction
mixture was extracted with ethyl acetate. The combined organic layers were
washed with water and brine, dried by anhydrous Na2SO4 and concentrated.
The crude product was purified by flash column chromatography.
Thioazaylide 15: 1H NMR (300 MHz, CDCl3) δ 7.81–7.55 (m, 4H),
7.47–7.17 (m, 23H), 6.94–6.80 (m, 3H), 4.35 (td, J = 8.8, 3.5 Hz, 1H), 3.14
(qd, J = 6.5, 2.8 Hz, 2H), 2.30 (m, 1H), 2.13–1.99 (m, 1H), 1.99–1.78 (m, 2H);
31P (122 MHz, CDCl3) δ 18.3; FT-IR (thin film) 3025.4, 2985.3, 1728.8 (strong,
C =O, carbonyl group), 1601.3, 1450.0, 1372.3, 1268.0, 1247.1, 1070.2 cmÀ1
MS (ESI) m/z calcd for C42H37N2NaO2PS [M+Na]+ 687.2, found 687.1.
Compound 16a: 1H NMR (300 MHz, CDCl3) δ 7.81 (s, 1H), 7.76–7.24
(m, 25H), 3.95 (dt, J =9.2, 5.5 Hz, 1H), 3.01 (p, J =8.1 Hz, 1H), 2.66–2.51
(m, 1H), 1.92 (m, 2H), 1.68–1.61 (m, 1H), 1.34–1.26 (m, 1H); 31P (122 MHz,
CDCl3) δ 30.2; 13C NMR (75 MHz, CDCl3) δ 178.99, 150.71, 145.25, 133.24,
133.12, 132.87, 132.74, 132.01, 131.59, 130.54, 130.04, 129.81, 129.51, 128.59,
128.41, 128.22, 128.15, 127.56, 126.42, 126.00, 121.61, 120.73, 115.57, 63.10,
60.11, 49.03, 32.18, 25.76; MS (ESI) m/z calcd for C36H33N2NaO2PS [M+Na]+
611.2, found 611.1.
Compound 16b: 1H NMR (300 MHz, CDCl3) δ 9.55 (t, 5.6 Hz, 1H, NH)),
9.12 (d, J = 9.5 Hz, 1H, NH)), 8.88 (s, 1H, NH), 8.12–6.82 (m, 20H), 5.18
(d, J = 9.0 Hz, 1H), 4.46–4.33 (m, 2H), 4.20–4.02 (m, 1H), 3.44 (m, 1H), 3.31
(m, 1H), 2.39 (m, 1H), 2.17 (m, 3H), 1.36 (d, J = 10.8 Hz, 6H); 31P (122 MHz,
CDCl3) δ 30.2; 13C NMR (75 MHz, CDCl3) δ 173.13, 169.58, 168.43, 157.53,
150.52, 133.19, 133.06, 133.03, 132.99, 132.53, 132.39, 132.21, 132.06, 131.05,
130.90, 130.49, 129.75, 129.68, 129.62, 129.33, 129.16, 129.01, 128.93, 128.85,
128.61, 128.23, 128.12, 127.42, 126.29, 121.54, 121.42, 119.59, 115.85, 62.20,
60.24, 55.76, 47.78, 43.79, 32.61, 25.91; MS (ESI) m/z calcd for
C36H39N4NaO4PS [M+Na]+ 677.2, found 677.1.
Dehydroalanine (Dha) 18: 1H NMR (300 MHz, CDCl3) δ 8.54 (br, 1H), 7.85-
7.81 (m, 2H), 7.57-7.43 (m, 3H), 6.79 (s, 1H), 5.98 (d, 1H, J = 1.4 Hz), 3.88 (s,
3H); 13C NMR (75 MHz, CDCl3) δ 166.0, 165.0, 134.4, 132.3, 131.2, 129.0,
127.1, 109.1, 53.3; MS (ESI) m/z calcd for C11H12NO3 [M+H]+ 206.1,
found 206.2.
Deprotection of the diphenylphosphoryl group
A sulfenamide product (0.05 mmol) was treated with 1 ml of cold 10% water in
TFA at 0 °C (total c = 0.05 M). The resulted solution was stirred for 30 min at
0 °C. Upon completion, the excess TFA was removed with hexanes as the co-
solvent under vacuum. To the remaining mixture was added cold diethyl ether
to solidify the proline-sulfenamide TFA salt. The solid product was further
washed with cold diethyl ether (2 ml × 5) and dried to provide the final
product.
Compound 19: 1H NMR (300 MHz, CDCl3) δ 10.31 (br-s, 1H), 9.70
(br-s, 1H), 9.09 (s, 1H), 7.57–7.35 (m, 5H), 4.91 (m, 1H), 4.64 (m, 1H),
3.74 (s, 3H), 3.38 (m, 2H), 3.23 (m, 2H), 2.32 (m, 1H), 2.01 (m, 3H); 13C
NMR (75 MHz, CDCl3) δ 172.40, 171.21, 168.61, 132.96, 128.96, 128.70,
127.61, 60.54, 53.21, 51.71, 47.05, 40.52, 29.64, 24.59; MS (Maldi) m/z calcd for
C16H22N3O4S [M+H]+ 352.1331, found 352.1320.
1
Compound 16c: H NMR (400 MHz, CDCl3) δ 8.72 (s, 1H), 7.82 (m, 4H),
The reaction between 11 and HNO
7.58–7.40 (m, 6H), 4.18 (t, J = 7.5 Hz, 1H), 3.19 (dd, J =12.2, 6.0 Hz, 2H),
2.65–2.25 (m, 5H), 2.03 (t, J = 11.8 Hz, 2H), 1.90 (dd, J = 13.6, 10.1 Hz, 5H), To an argon sparged mixture of acetonitrile and water was added 11
1.42 (d, J = 7.3 Hz, 3H), 1.25 (d, J = 8.4 Hz, 3H), 1.00 (d, J = 6.0 Hz, 2.5H), (0.21 mmol), and to this stirring mixture was added freshly prepared Angeli’s
0.93 (d, J = 7.1 Hz, 0.5H); 31P (122 MHz, CDCl3) δ 28.70; 13C NMR salt (0.1 mmol, Na2N2O3). The resulting solution was allowed to stir until the
(101 MHz, CDCl3) δ 211.43, 175.80, 132.34, 132.25, 132.15, 131.96, 131.86, reaction was completed (by TLC, or 20 min). The product 21 (50% yield) was
128.89, 128.79, 128.66, 77.32, 77.00, 76.68, 62.25, 57.80, 52.67, 52.24, 48.20, isolated by extraction and flash column chromatography.
36.73, 34.47, 31.11, 31.05, 30.90, 29.74, 25.64, 25.16, 25.10, 22.28, 22.19; MS
(Maldi) m/z calcd for C27H36N2O3PS [M+H]+ 499.2178, found 499.2201.
Compound 16d: 1H NMR (300 MHz, CDCl3) δ 8.64 (br-s, 1H, NH),
7.92–7.72 (m, 4H), 7.52 (dddd, J = 12.8, 9.3, 7.3, 2.3 Hz, 6H), 4.21 (ddd,
Compound 21: 1H NMR (300 MHz, CDCl3) δ 10.04 (br-s, 1H, NH),
7.96–7.68 (m, 5H), 7.64–7.39 (m, 5H), 5.85 (br-s, 1H, NH), 4.03 (ddd,
J = 8.1, 5.7, 2.3 Hz, 1H), 3.18 (m, 2H), 2.46–2.18 (m, 1H), 2.18–1.99 (m, 1H),
1.89 (ddt, J = 13.5, 8.9, 4.2 Hz, 2H); 31P (122 MHz, CDCl3) δ 28.6; 13C NMR
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