Heparan Sulfate Mimetic Library
MED
was generally used in combination with silica column chromatog-
raphy to give completely desalted pure product.
1H, allyl-3’trans), 5.10 (dm, 1H, Jallyl-2’-3’cis =10.3, allyl-3’cis), 4.87 (d,
1H, J1-2 =2.0, H1), 4.66–4.58 (overlapped with DOH, 2H, H2 and
H6b), 4.54 (dd, 1H, J6a-6b =14.3, J5-6a =7.6, H6a), 4.50 (dd, 1H, J3-4
=
SPE with Strata-NH2 cartridge: The crude residue was extracted
with MeOH (3ꢂ1 mL). The mixture was centrifuged and the above
clear solution was transferred using a Pasteur pipette. Generally,
the second extraction was already very weak and the third did not
show any product. This step removed most inorganic salts. The
combined MeOH extracts were checked for pH, acidified by the ad-
dition of 10–20 mL acetic acid (adjusted to pH 6). The solution was
evaporated to dryness and re-dissolved in H2O (1 mL) for loading.
A Strata-NH2 cartridge (Phenomenex, 500 mg) was primed by elu-
tion with MeOH (9 mL), H2O (9 mL), 5% aq. acetic acid (6 mL) and
H2O (9 mL). The sample solution was loaded and the cartridge was
eluted with H2O, then aqueous NH4HCO3 (0.01m, 0.02m, 0.05m,
0.07m, 0.1m and 0.2m; 12 mL each gradient for 4ꢂ3 mL collec-
tions). Disulfates were generally eluted with 0.02m gradient, and
clearly separated from the related trisulfate (if applicable) and un-
dersulfated by-products. Fractions were checked by TLC and CE,
pooled and lyophilized.
9.5, J2-3 =3.2, H3), 4.24 (ddm, 1H, Jgem =11.9, J=6.0, allyl-1’), 3.98
(ddm, 1H, J=6.8, allyl-1’), 3.88 (ddd, 1H, J5ꢁ6b =2.8, J4ꢁ5 =9.5, H5),
3.41 (dd, 1H, H4), 3.00 ppm (s, 3H, MeO).
Methyl
4-O-allyl-6-deoxy-6-{4-[4-(4-trifluoromethylbenzyloxy)-
benzamidyl]methyl-[1,2,3]triazol-1-yl}-2,3-di-O-sulfo-a-d-manno-
pyranoside, disodium salt (63): White powder, 4.3 mg, 15% (Rf =
1
0.23, EtOAc/MeOH/H2O 10:2:1); H NMR (D2O, 400 MHz): d=7.85 (s,
1H, triazole), 7.55 (dm, 2H, J=9.0, Ar), 7.54 (d, 2H, J=8.6, Ar), 7.44
(d, 2H, J=8.6, Ar), 6.86 (dm, 2H, J=9.0, Ar), 5.79 (dddd, 1H, Jallyl-2’-
3’trans =17.3, Jallyl-2’-3’cis =10.2, J=6.3, J=6.0, allyl-2’), 5.16 (dm, 1H,
allyl-3’trans), 5.09 (s, 2H, OCH2), 5.05 (dm, 1H, Jallyl-2’-3’cis =10.2, allyl-
3’cis), 4.79 (d, 1H, J1-2 =1.8, H1), 4.64 (dd, 1H, J6a-6b =14.4, J5-6b =2.8,
H6b), 4.58 (dd, 1H, J2-3 =3.2, H2), 4.52 (dd, 1H, J5-6a =7.4, H6a), 4.50,
4.44 (AB q, 2H, Jgem =15.8, NCH2-triazole), 4.45 (dd, 1H, J3-4 =9.5,
H3), 4.22 (ddm, 1H, Jgem =12.0, J=6.0, allyl-1’), 3.96 (ddm, 1H, J=
6.7, allyl-1’), 3.78 (ddd, 1H, J4-5 =9.5, H5), 3.35 (dd, 1H, H4),
2.84 ppm (s, 3H, MeO).
Methyl 4-O-allyl-6-azido-6-deoxy-2,3-di-O-sulfo-a-d-mannopyra-
noside, disodium salt (24): White amorphous powder (55 mg,
89%; CE: tm =8.9 min, 99% purity; Rf =0.20, EtOAc/MeOH/H2O
General procedure for Swern–Wittig reactions: A dry round-bot-
tomed flask was loaded with anhydrous CH2Cl2 (4.5 mL) and DMSO
(1.12 mmol, 6.5 equiv), and the resulting solution was stirred at
ꢁ788C while oxalyl chloride (0.533 mmol, 3.1 equiv) was added
dropwise. After stirring at ꢁ788C for 10 min, a solution of triazole
alcohol 69 (0.172 mmol) in anhydrous CH2Cl2 (0.7 mL) was added.
After another 10 min, Et3N (1.12 mmol, 6.5 equiv) was added. The
mixture was stirred and allowed to warm to RT after removal of
the dry-ice–acetone bath. The resulting aldehyde stock solution
was used directly for Wittig reactions. (During library production,
the stock solution was split accordingly before addition of the
Wittig reagent.) Wittig reagent (2 equiv, 0.344 mmol) was added. In
some cases, CH2Cl2 was removed by evaporation, and the mixture
was treated with an alternative solvent such as toluene, THF, or
DMF. The mixture was stirred at room or elevated temperature for
a few hours or overnight. The mixture was evaporated under
vacuum and purified by flash chromatography (hexane/EtOAc
7:1!1:1). The product fractions were pooled according to TLC,
evaporated, and dried under high vacuum.
1
10:2:1); H NMR (D2O, 400 MHz): d=5.88–5.76 (m, 1H, allyl-2’), 5.20
(d, 1H, J2’-3’trans =17.2, allyl-3’trans), 5.12 (d, 1H, J2’-3’cis =10.0, allyl-
3’cis), 4.91 (s, 1H, H1), 4.65 (br s, 1H, J2-3 =3.2, H2), 4.48 (dd, 1H, J2-
=3.2, J3-4 =9.2, H3), 4.21 (dd, 1H, Jgem =11.6, J1’-2’ =5.6, allyl-1’), 4.00
(dd, 1H, J1’-2’ =6.4, allyl-1’), 3.71–3.67 (m, 1H, H5), 3.58 (dd, 1H, J6a-
6b =13.6, J5-6b =2.0, H6b), 3.58 (dd, 1H, J4-5 =9.6, H4), 3.46 (dd, 1H,
J
5-6a =5.6, H6a), 3.30 ppm (s, 3H, MeO); 13C NMR (D2O, 100 MHz, in-
ternal MeOH at 49.1 ppm): d=133.9, 119.2, 98.4, 76.1, 75.3, 74.2,
73.1, 70.7, 55.4, 50.8 ppm.
General procedure for click chemistry (Route A, unless otherwise
specified): To a 2 mL sample vial was loaded a solution of the sulfat-
ed sugar azide (0.67m in H2O, 52 mL, 35 mmol) and a solution of
the acetylene (0.25–0.83m in tert-butanol, 42 mmol, 1.2 equiv). To
this mixture was added a solution of copper(II) sulfate (0.3m in
H2O, 5.8 mL, 1.75 mmol, 5 mol%) and a solution of sodium ascor-
bate (1m in H2O, 7.0 mL, 6.99 mmol, 20 mol%). Note: in the case of
propargylamine, 5ꢂ7.0 mL of 1m stock solution of sodium ascor-
bate was added at intervals of 10 min. The color of the reaction
mixture changed from blue to yellow after each addition of
sodium ascorbate, but quickly back to blue, possibly due to facile
air oxidation of amine-coordinated CuII/CuI complexes. Thus several
portions of reducing agent were added to maintain the presence
of CuI. The mixture was shaken on a Minishaker at 600 rpm, RT,
overnight, and purified by flash chromatography (EtOAc/MeOH/
H2O 50:2:1!20:2:1!10:2:1). In most cases, the above product
was purified again by using Strata-X cartridge to give the corre-
sponding triazole product.
A sample of intermediate aldehyde (70) was purified by flash chro-
matography (hexane/EtOAc 7:1!2:1) to give a colorless gum (Rf =
1
0.57, hexane/EtOAc 1:1); H NMR (CDCl3, 400 MHz): d=10.12 (s, 1H,
CHO), 8.26 (s, 1H, triazole), 5.91 (dddd, 1H, Jallyl-2’ꢁ3’trans =17.4, Jallyl-2’-
3’cis =10.3, J=6.2, J=5.7, allyl-2’), 5.29 (dm, 1H, allyl-3’trans), 5.20
(dm, 1H, Jallyl-2’-3’cis =10.3, allyl-3’cis), 4.88 (dd, 1H, J6a-6b =14.1, J5-6b
2.7, H6b), 4.84 (s, 1H, H1), 4.52 (dd, 1H, J5-6a =7.9, H6a), 4.36 (dddd,
1H, Jgem =12.5, J=5.4, J=1.4, J=1.4, allyl-1’), 4.21 (dd, 1H, J2-3
5.7, J3-4 =6.8, H3), 4.08 (dddd, 1H, J=6.5, J=1.4, J=1.1, allyl-1’),
4.07 (dd, 1H, J1-2 =0.8, H2), 3.89 (ddd, 1H, J4-5 =10.0, H5), 3.18 (dd,
1H, H4), 3.02 (s, 3H, MeO), 1.43 (s, 3H, Me), 1.31 ppm (s, 3H, Me).
=
=
Other routes: similar to Route A except the diol 17 (Route B) or
isopropylidene acetal 11 (Route C) was used as azide source, both
of which were added as a tert-butanol stock solution (0.67m). The
crude product was purified by flash chromatography (hexane/
EtOAc 4:1!1:4!EtOAc, or extra elution with EtOAc/MeOH 95:5
for diols).
Methyl
4-O-allyl-6-deoxy-6-{4-[(2-(E)-methoxycarbonyl)vinyl]-
[1,2,3]triazol-1-yl}-2,3-di-O-isopropylidene-a-d-mannopyranoside
[(E)-72]: White powder (52.0 mg, 100%, Rf =0.46, hexane/EtOAc=
1:1); 1H NMR (CDCl3, 400 MHz): d=7.84 (s, 1H, triazole), 7.64 (d,
1H, J=16.1, trans-vinyl), 6.66 (d, 1H, J=16.1, trans-vinyl), 5.90
(dddd, 1H, Jallyl-2’-3’trans =16.8, Jallyl-2’-3’cis =10.3, J=5.9, J=5.1, allyl-2’),
Methyl 4-O-allyl-6-deoxy-6-(4-phenyl-[1,2,3]triazol-1-yl)-2,3-di-O-
sulfo-a-d-mannopyranoside, disodium salt (53): Pale-yellow
powder, 18.0 mg, 84% (Rf =0.19, EtOAc/MeOH/H2O 10:2:1);
1H NMR (D2O, 400 MHz): d=8.18 (s, 1H, triazole), 7.64–7.61 (m, 2H,
Ph), 7.37–7.32 (m, 2H, Ph), 7.30–7.25 (m, 1H, Ph), 5.82 (dddd, 1H,
5.28 (d, 1H, allyl-3’trans), 5.18 (d, 1H, Jallyl-2’
=3’cis =10.3, allyl-3’cis),
4.84 (s, 1H, H1), 4.81 (dd, 1H, J6a-6b =13.9, J5-6b =2.2, H6b), 4.47 (dd,
1H, J5-6a =7.3, H6a), 4.35 (dd, 1H, Jgem =12.5, J=5.9, allyl-1’), 4.20
(dd, 1H, J2-3 =5.9, J3-4 =6.6, H3), 4.10–4.05 (m, 2H, H2 and allyl-1’),
J
allyl-2’-3’trans =17.1, Jallyl-2’-3’cis =10.3, J=6.8, J=6.0, allyl-2’), 5.20 (dm,
ChemMedChem 2012, 7, 1267 – 1275
ꢀ 2012 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
1273