Potent Inhibitor of Folylpoly-γ-glutamate Synthetase
Journal of Medicinal Chemistry, 2006, Vol. 49, No. 2 785
carbobenzyloxy-N-methylamino)benzoic acid (285 mg, 1 mmol)
in 10 mL of fresh-distilled CH2Cl2 was stirred at 0 °C under N2
for 5 min, followed by addition of EDCl (192 mg, 1 mmol) in one
portion. The resulting mixture was then warmed to room temper-
ature and stirred for 2 h. The reaction mixture was put in an ice-
water bath and 2 mL of 2 N HCl was added to quench the reaction.
The resulting mixture was poured into 200 mL of EtOAc, washed
with NaHCO3 and brine, and dried over Na2SO4. Removal of the
solvent gave 610 mg of the crude product, which was purified by
silica gel column chromatography (2% MeOH in EtOAc, Rf ) 0.4)
to yield 478 mg (92%) of 50a as a colorless oil. 1H NMR
(CDCl3): δ 7.89-7.92 (m, 2H), 7.78 [(d, J ) 6.84 Hz, 0.5 H),
7.73 (d, J ) 6.89 Hz, 0.2 H), 7.69 (d, J ) 7.00 Hz, 0.3 H), amide
N-H, three rotamers], 7.28-7.36 (m, 7H), 3.78-3.79 (m, 3H),
3.61-3.75 (m, 9H), 2.80-2.86 (m, 1H), 2.33-2.37 (m, 2H), 2.24-
2.32 (m, 2H), 2.10-2.22 (m, 1H), 1.93-2.00 (m, 3H), 1.75-1.87
(m, 2H). 13C NMR (CDCl3): δ 174.88, 174.84, 173.22, 173.18,
172.48, 172.43, 166.97, 155.45, 146.69, 136.66, 130.90, 128.92,
128.51, 128.44, 128.32, 125.40, 68.02, 53.04, 53.02, 52.62, 52.57,
52.16, 51.92, 51.87, 51.74, 39.12, 38.88, 37.78, 31.54, 31.45, 29.29,
24.54. 31P NMR (CDCl3): δ 57.42, 57.36, 56.84. ESI-HRMS (m/
z): calcd for C30H39N2O11PNa [M + Na]+ 657.2189, found
657.2204.
0.2) to afford 37 mg of a yellow solid. The yellow solid was then
stirred for 3 h with 40 mg of Dowex-H in MeOH. Removal of the
resin and solvent gave 25 mg (42% over three steps) of 1d as a
1
yellow solid. H NMR (MeOH-d4): δ 8.58 (s, 1H), 7.75 (d, J )
14.7 Hz, 2H), 6.78 (d, J ) 14.7 Hz, 2H), 4.85 (s, 2H), 4.53-4.54
(m, 1H), 3.72 (s, 3H), 3.60-3.69 (m, 6H), 3.25 (s, 3H), 2.80 (m,
1H), 2.32-2.33 (m, 2H), 2.21 (m, 1H), 2.08 (m, 2H), 1.97-1.98
(m, 1H), 1.88-1.93 (m, 1H), 1.70 (m, 3H). 13C NMR (MeOH-d4):
δ 174.95, 172.48, 171.81, 167.75, 162.16, 161.10, 152.37, 150.62,
147.70, 146.97, 127.87, 120.78, 119.70, 110.08, 54.03, 53.21, 52.68,
50.13, 49.83, 49.57, 41.18, 38.52, 37.17, 31.64, 29.80, 27.63, 27.55,
26.10, 25.38, 23.11. 31P NMR (MeOH-d4): δ 42.48. ESI-HRMS
(m/z): calcd for C28H37N8O9PNa [M + Na]+ 683.2319, found
683.2328. UV λmax: (phosphate buffer, pH 7.0) 225, 260, 310, 375
nm.AnalyticalHPLCmethodB: tR)23.6min.Anal.(C28H37N8O9P‚3CH3OH)
C, H, N.
N-{[4-(N-benzyloxycarbonyl-N-methyl)amino]benzoyl}-L-
glutamyl-γ}-[Ψ{P(O)(OH)CH2}]-glutaric Acid (52). To a solu-
tion of tri-tert-butyl phosphinate 50b (22 mg, 0.03 mmol) in 0.5
mL of freshly distilled CH2Cl2 was added TFA (0.1 mL, 1.2 mmol)
at 0 °C. The resulting solution was warmed to room temperature
and stirred overnight. Removal of the solvent in a vacuum gave
1
the free tetraacid as an oily solid (yield 17 mg, 100%). H NMR
(MeOH-d4): δ 7.90 (d, J ) 8.4 Hz, 2H), 7.42 (d, J ) 8.4 Hz, 2H),
7.31-7.37 (m, 5H), 7.04 (d, J ) 8.1 Hz, 1H), 5.17 (s, 2H), 4.67
(dd, J1 ) 8.4 Hz, J1 ) 4.3 Hz, 1H), 3.35 (s, 3H), 2.82 (m, 1H),
2.38-2.43 (m, 2H), 2.28-2.36 (m, 2H), 2.13-2.14 (m, 1H), 1.90-
2.10 (m, 5H). 13C NMR (MeOH-d4): δ 176.67, 175.46, 173.96,
173.80, 173.62, 168.89, 168.74, 155.86, 146.66, 136.72, 131.48,
129.56, 129.23, 128.58, 128.38, 128.22, 127.96, 125.46, 67.81,
53.82, 53.73, 53.61, 38.93, 36.89, 32.06, 31.18, 31.11, 30.30, 29.75,
28.93, 26.38, 25.66, 23.95. 31P NMR (MeOH-d4): δ 53.39. MS
(m/z, M + Na+): 601.
Di-tert-butyl {N-{p-[(N-carbobenzyloxy-N-methyl)amino]ben-
zoyl}-r-tert-butyl-L-glutamyl-γ}-[Ψ{P(O)(OMe)CH2}]-glut-
arate (50b). This compound was obtained in 92% yield from 49b
using the same procedure described above for 50a. 1H NMR
(CDCl3): δ 7.88 (d, J ) 7.87 Hz), 7.46-7.53 (m, 1H), 7.29-7.35
(m, 7H), 5.18 (s, 2H), 4.64-4.71 (m, 1H), 3.60-3.71 (m, 3H),
3.34 (s, 3H), 2.66 (m, 1H), 2.18-2.24 (m, 4H), 2.09-2.14 (m,
1H), 1.80-1.99 (m, 3H), 1.69-1.78 (m, 2H), 1.49 (s, 9H), 1.42
(s, 9H), 1.41-1.46 (m, 9H). 13C NMR (CDCl3): δ 173.73, 172.24,
172.22, 172.19, 172.17, 171.17, 171.13, 166.91, 166.83, 155.44,
146.57, 136.66, 131.22, 128.91, 128.48, 128.32, 128.29, 125.40,
82.98, 82.96, 82.94, 81.80, 81.77, 81.75, 80.95, 67.99, 53.88, 53.84,
53.78, 53.74, 53.68, 53.59, 51.74, 51.69, 51.55, 51.50, 39.89, 39.82,
39.68, 39.65, 37.79, 33.00, 32.96, 32.91, 30.69, 30.30, 30.23, 29.96,
29.80, 29.70, 29.58, 29.51, 28.46, 28.41, 28.37, 25.21, 25.01, 24.94,
24.78, 24.49, 24.11, 24.05. 31P NMR (CDCl3): δ 57.84, 57.72,
57.35, 57.26. ESI-HRMS (m/z): calcd for C39H57N2O11PNa [M +
Na]+ 783.3598, found 783.3617.
Dimethyl {N-[p-(N-methyl)aminobenzoyl]-r-methyl-L-glutamyl-
γ-[Ψ{P(O)(OCH3)CH2 }]-glutarate (51). To a solution of the
tetramethyl phosphinic pseudopeptide 50a (60 mg, 0.09 mmol) in
5 mL of fresh-distilled THF was added 12 mg of 5% Pd/C, and
the mixture was saturated with H2. The resulting mixture was then
stirred at room temperature under H2 overnight. The Pd/C was
filtered off. The filtrate was collected and concentrated to give 45
mg (100%) of 51 as an oil, which was used without further
purification. 1H NMR (CDCl3): δ 7.75 (d, J ) 12.2 Hz, 2H), 7.25-
7.34 (m, 1H), 6.57 (d, J ) 12.2 Hz, 2H), 4.79 (m, 1H), 4.36 (m,
1H), 3.77 (s, 3H), 3.61-3.72 (m, 9H), 2.86 (s, 3H), 2.31-2.33
(m, 2H), 2.27-2.29 (m, 2H), 2.23-2.25 (m, 1H), 1.93-1.98 (m,
3H), 1.82-1.87 (m, 2H). 13C NMR (CDCl3): δ 174.91, 173.25,
172.85, 167.65, 152.61, 129.41, 121.59, 111.63, 52.93, 52.54, 52.13,
51.85, 39.00, 38.83, 31.50, 30.55, 29.73, 29.21, 29.05, 24.93. 31P
NMR (CDCl3): δ 57.20, 56.71. ESI-HRMS (m/z): calcd for
C22H33N2O9PNa [M + Na]+ 523.1821, found 523.1824.
Methyl (2S)-2-N-[p-(N-carbobenzyloxy-N-methyl)aminoben-
zoyl]amino-4-phenylselenylbutyrate (54). To the suspension of
diphenyl diselenide (463 mg, 1 mmol) in 15 mL of EtOH was added
sodium borohydride (95 mg, 2.5 mmol) in portions under argon,
until the orange color of the mixture disappeared. The solution of
bromide 41 (1.19 g, 3.2 mmol) in 20 mL of EtOH was then added.
After 30 min, the resulting mixture was poured into 200 mL of
Et2O. The resulting mixture was washed with NaHCO3 and brine
and dried over Na2SO4. Removal of the solvent gave 620 mg of
the crude product, which was purified by flash chromatography
(hexanes:EtOAc ) 1:9, Rf ) 0.45) to give 483 mg (90%) of 54 as
1
a colorless oil. H NMR (CDCl3): δ 7.79 (d, J ) 8.6 Hz, 2H),
7.49-7.50 (m, 2H), 7.31-7.38 (m, 7H), 7.24-7.27 (m, 3H), 7.07
(d, J ) 7.8 Hz, 1H), 5.20 (s, 2H), 4.91-4.95 (m, 1H), 3.75 (s,
3H), 3.35 (s, 3H), 2.94-3.01 (m, 2H), 2.35-2.40 (m, 1H), 2.18-
2.22 (m, 1H). 13C NMR (CDCl3): δ 172.88, 166.90, 155.45, 146.70,
136.64, 133.22, 131.07, 130.04, 129.61, 128.97, 128.58, 128.35,
128.27, 127.59, 125.38, 68.09, 53.23, 53.03, 37.77, 33.40, 23.68.
MS (m/z, M + Na+): 563. Anal. (C27H28N2O5): C, H, N.
(2S)-2-N-[p-(N-carbobenzyloxy-N-methyl)aminobenzoyl]amino-
4-phenylselenylbutyric Acid (55). To a solution of the methyl ester
54 (390 mg, 0.72 mmol) in 4 mL of MeOH and 1 mL of CH2Cl2
at 0 °C was added 1 mL of 1 N LiOH. The resulting mixture was
stirred at room temperature for 2 h. Dowex-H was added to
neutralize the reaction mixture and was then removed by filtration.
The filtrate was collected and concentrated in vacuo to yield 380
mg (100%) of 55, which was used without further purification. 1H
NMR (CDCl3): δ 7.69 (d, J ) 7.0 Hz, 2H), 7.29-7.34 (m, 7H),
7.10-7.16 (m, 5H), 5.15 (s, 2H), 4.64 (m, 1H), 3.22 (s, 3H), 2.89
(m, 2H), 2.27 (m, 1H), 2.13 (m, 1H). 13C NMR (CDCl3): δ 168.50,
155.53, 146.47, 136.56, 132.54, 130.82, 129.48, 128.95, 128.58,
128.52, 128.35, 127.11, 125.14, 68.13, 53.40, 37.57, 32.74, 4.07.
ESI-MS (m/z, [M-H+ + Na+]): 548.9.
Dimethyl {N-[(4-deoxy-2,4-diamino-10-methyl)pteroyl]-r-
methyl-L-glutamyl-γ}-[Ψ{P(O)(OH)CH2}]-glutarate (1d). Di-
bromotriphenylphosphine (127 mg, 0.3 mmol) was suspended in 1
mL of dry dimethylacetamide, followed by addition of (2,4-diamino-
6-pteridinyl)methanol hydrochloride (11a) (23 mg, 0.1 mmol). The
resulting mixture turned clear and red in few minutes with emission
of gas. The reddish solution was stirred at room temperature for
20 h before diethylisopropylamine (52 mg, 0.4 mmol) and a solution
of the tetramethyl ester 51 (45 mg, 0.09 mmol) in dimethylaceta-
mide (1 mL) was added. The resulting mixture was then kept at 60
°C for 40 h and monitored by HPLC. The solvent was removed in
a vacuum to give 240 mg of the crude product, which was purified
by silica gel column chromatography (MeOH:CH2Cl2 ) 1:1, Rf )
Pivaloyloxymethyl (2S)-2-N-[p-(N-carbobenzyloxy-N-methyl)-
aminobenzoyl]amino-4-phenylselenylbutyrate (56). To a solution
of the acid 55 (273 mg, 0.52 mmol) in 5 mL of dry DMF was
added POMI (630 mg, 2.6 mmol), dimethyl methylphosphonate
(322 mg, 2.6 mmol), and Ag2CO3 (360 mg, 1.3 mmol). The