Notes
Plant Material. Twigs, spines, stems, flower buds, and pieces of
Journal of Natural Products, 2006, Vol. 69, No. 2 263
MeOH in CH2Cl2 (0.5%, 1%, 1.5%, 2%, 3%, 5%, 8%, 10%, 30%; 200
mL fractions). Fraction 3 (35 mg) from this column was then purified
using a second silica gel gravity elution column (2.5 cm × 7.5 cm)
with a step gradient of 100% hexane, followed by EtOAc in hexane
(10%, 15%, 20%, 24%, 28%, 32%, 36%, 40%, 50%, 75%, 100%; 100
mL fractions). Fractions 6 and 7 from this column were combined and
evaporated (20 mg), and MeOH was added to precipitate pure spinosan
A (1, 12 mg). An additional 5 mg of 1 was later isolated from other
fractions using similar procedures.
lower bark of Dalea spinosa A. Gray (Fabaceae) “smoke tree” were
collected by one of the authors (Gil Belofsky) and Mr. Kavon Azadi
on May 31, 2002, in Coachwhip Canyon, Anza-Borrego Desert, GPS
position: N 33°17.217′, W 116°09.064′. A voucher specimen (#11563)
was authenticated by Dr. Paul Buck, Professor Emeritus, Department
of Biological Science, The University of Tulsa, and deposited in the
Barclay Herbarium at the same location. Plants were stored in a -20
°C freezer prior to extraction.
Microbial Strains, Chemicals, and Susceptibility Testing. S.
aureus strains (the wild-type 8325-4, isogenic NorA knockout/K1758,
and overexpression/K2361 mutants), E. coli (wild-type strain K12), and
P. aeruginosa (PA14) were cultured in Mueller-Hinton (MH) broth.
E. faecalis (V583) was cultured in brain heart infusion (BHI). S.
cereVisiae (BY4742) and C. albicans (F5) cells were grown in yeast
extract peptone and dextrose (YPD). INF 271 was kindly provided by
Protez Pharmaceuticals, Malvern, PA. Berberine was purchased from
Sigma Chemical Co. (St. Louis, MO). Cells (105/mL) were inoculated
into MH, BHI, or YPD and dispensed at 0.2 mL/well in 96-well
microtiter plates.
Growth inhibition was determined by serial 2-fold dilution of test
compounds, starting at 50 µg/mL (42-50 µM), combined with 30 µg/
mL (89 µM) of berberine against Gram-positive bacteria, 10 µg/mL
(13.6 µM) erythromycin for Gram-negative bacteria, and 1 µg/mL (3.3
µM) fluconazole for yeast. An MDR inhibitor was defined as a
compound that completely prevented cell growth in the presence of
subinhibitory concentrations of an antibiotic during an 18-h incubation
at 37 °C for S. aureus, E. faecalis, E. coli, and P. aeruginosa and a
24-h incubation at 30 °C for S. cereVisiae and C. albicans. All tests
were done in triplicate by following National Center for Clinical
Laboratory Standards (NCCLS) recommendations.24 Growth was as-
sayed with a microtiter plate reader (Spectramax PLUS384, Molecular
Devices) by absorption at 600 nm.
Berberine Potentiation Assay. A checkerboard assay was conducted
to specify the degree of potentiation of berberine by 1, 4, 5, and 6 and
to determine the specificity of these compounds for the NorA efflux
pump. Serial 2-fold dilutions of berberine and a test compound were
mixed in each well of a 96-well microtiter plate so that each row (and
column) contained a fixed amount of one agent and increasing amounts
of the second agent. The resulting plate presents a pattern in which
every well contains a unique combination of concentrations between
the two molecules. The concentrations of berberine (row) ranged from
30 to 0.5 µg/mL (89-1.5 µM), while plant compound (column)
concentrations ranged from 15 to 0.015 µg/mL (corresponding to molar
concentrations in the ranges 56-42 µM to 0.06-0.04 µM). Each plate
also contained a row and column in which a serial dilution of each
agent was present alone. The >89 µM (>30 µg/mL) MIC values for
berberine alone, against S. aureus wild-type and NorA overexpression
strains (Table 2), were determined in a separate assay. Cells were added
to each well at a final concentration of 5 × 106 CFU/mL, and plates
incubated at 37 °C for 24 h. Growth was assayed by absorption at 600
nm with a microtiter plate reader (Spectramax PLUS384, Molecular
Devices). An OD less than 0.04 was considered to reveal no bacterial
growth.
Extraction and Isolation. Finely divided D. spinosa bark (220 g)
was extracted with MeOH (1.5 L, 24 h) to provide, after evaporation,
4.1 g of crude extract. This material was preadsorbed in a CH2Cl2-
MeOH solution onto ∼10 g of silica gel, the solvent removed under
vacuum, and the resulting powder subjected to vacuum liquid chro-
matography (VLC) over a prepacked column bed, 10 cm (i.d.) × 3.5
cm (h), of TLC-grade silica gel (Selecto Scientific). The column was
eluted using a stepwise gradient of solvents (500 mL each), beginning
with hexane and continuing with mixtures of EtOAc in hexane (20%,
40%, 60%, 80%, 100%), followed by mixtures of MeOH in CH2Cl2,
up to 30%. The five fractions that eluted with 20-100% EtOAc were
combined on the basis of TLC analysis (EM Science, silica gel 60,
Fraction 9 (86 mg) from the Sephadex column was further purified
using column chromatographic procedures nearly identical to that
described above, resulting in a 23 mg fraction that, following addition
of MeOH, precipitated pure spinosan B (2, 13 mg).
Fractions 8 (62 mg) and 10 (56 mg) from the Sephadex column
were purified over silica gel using a sequence similar to that described
above (step gradients of MeOH in CH2Cl2, followed by EtOAc in
hexane), resulting in, respectively, compound 3 (9 mg) and, with one
additional EtOAc-hexane silica gel column procedure, compound 4
(8 mg).
Fraction 12 (86 mg) from the Sephadex column was subjected to
three successive silica gel chromatography procedures (step gradients
in MeOH-CH2Cl2, EtOAc-hexane, and MeOH-CH2Cl2) to provide
a 22 mg fraction of interest (primarily a purple spot with vanillin/H2SO4
spray reagent on TLC, Rf ) 0.6 in 9:1 CH2Cl2-MeOH). This fraction
was purified over silica gel (2.5 cm × 7 cm; Davison 100-200 mesh)
using a linear gradient of MeOH (0 f 2%) in CH2Cl2, at a flow rate
of ∼20 mL/min, to afford compound 5 (6 mg).
Spinosan A (1): pale yellow solid; UV(MeOH) λmax (log ꢀ) 211
(4.32), 248 (4.03), 296 (3.72), 347 (3.88) nm; IR νmax (CHCl3) 3300
(br OH), 3019, 1664, 1616, 1458, 1310, 1125, 1034 cm-1; 1H and 13
C
NMR data, see Table 1; HMBC correlations (acetone-d6) CHO f C-2,
3, 9; H-4 f C-3, 5, 6, 7*, 8; OCH2O f C-5, 6; H-7 f C-4*, 5, 6, 8,
9; H3CO f C-2′; H-3′ f C-1′, 2′, 4′, 5′; H-5′ f C-1′, 2′*, 3′, 4′, 6′;
H-6′ f C-2, 2′, 3′*, 4′ (*indicates weak four-bond correlation);
HRESIMS found m/z 313.0670 (M + H)+, calcd for C17H13O6 313.0712.
Spinosan B (2): pale yellow solid; UV(MeOH) λmax (log ꢀ) 207
(4.42), 244 (4.28), 279 (3.80), 343 (3.98) nm; IR νmax (film on NaCl)
3323 (br OH), 2905, 1654, 1618, 1589, 1498, 1315, 1266, 1202, 1143,
1
1062 cm-1; H and 13C NMR data, see Table 1; HMBC correlations
(acetone-d6) CHO f C-2, 3; H-4 f C-3, 5, 6, 7*, 8; H-5 f C-6, 7, 9;
H3CO-6 f C-6; H-7 f C-5, 6, 8, 9; H3CO-2′ f C-2′; H-3′ f C-1′,
2′, 4′ 5′; H-5’ f C-1′, 2′*, 3′, 4′; H-6′ f C-2′, 3′*, 4′ (*indicates
weak four-bond correlation); HRESIMS found m/z 299.0894 (M + H)+,
calcd for C17H15O5 299.0919.
(+)-Melilotocarpan A (3): yellow oil; [R]D +21.0 (c 0.20, CHCl3);
UV(MeOH) λmax (log ꢀ) 208 (4.67), 228sh (4.11), 283 (3.75) nm; IR
νmax (CHCl3) 3528 (br OH), 3020, 2938, 1623, 1605, 1497, 1477, 1278,
1147, 1090 cm-1; 1H NMR (CDCl3) δ 7.19 (1H, d, J ) 8.4, H-5), 7.15
(1H, d, J ) 8.8, H-6′), 6.71 (1H, d, J ) 8.4, H-6), 6.47 (1H, d, J )
2.2, H-3′), 6.47 (1H, dd, J ) 8.8, 2.2, H-5′), 5.51 (1H, d, J ) 6.5,
H-4), 4.36 (1H, dd, J ) 10.5, 4.8, H-2â), 3.92 (3H, s, H3CO-7), 3.78
(3H, s, H3CO-4′), 3.64 (1H, d, J ) 10.5, H-2R), 3.57 (1H, dd, J ) 6.5,
4.8, H-3); 13C NMR (CDCl3) δ 161.4 (C-4′), 160.9 (C-2′), 149.9 (C-
8), 148.7 (C-9), 135.1 (C-7), 126.3 (C-5), 125.0 (C-6′), 119.1 (C-1′),
113.4 (C-10), 109.2 (C-6), 106.7 (C-3′), 97.1 (C-5′), 78.7 (C-4), 66.9
(C-2), 61.4 (OCH3-7), 55.7 (OCH3-4′), 39.6 (C-3); HMBC correlations
(CDCl3) H2-2 f C-3, 4, 9, 1′; H-3 fC-2, 1′, 2′; H-4 f C-2, 3, 5, 9,
10; H-5 f C-4, 7, 9; H-6 f C-7, 8, 10; H3CO-7 f C-7; H-3′ f C-1′,
2′, 5′; H3CO-4′ f C-4′; H-5′ f C-1′, 3′; H-6′ f C-3, 2′, 4′, 5′;
HRESIMS found m/z 301.1053 (M + H)+, calcd for C17H17O5 301.1076.
(+)-Medicarpin (4): yellow oil; [R]D +16.7 (c 0.20, CHCl3); UV,
1H NMR, and 13C NMR spectra were consistent with an authentic
sample;8 the structure of 4 was also confirmed by HSQC and HMBC
NMR spectroscopy; EIMS m/z 271 (M + H+, rel int 100), 256 (36),
242 (47), 213 (7), 185 (5), 175 (8), 162 (33), 148 (29), 135 (24).
6,4′-Dimethoxy-7,2′-dihydroxyisoflavone (5): pale yellow solid;
mp 198-200 °C (lit. 195-198 °C);16 UV(MeOH) λmax (log ꢀ) 204
(4.46), 216 (4.38), 256 (4.15), 288 (3.97), 320 (3.92), 359 (3.46) nm;
IR νmax (film on NaCl) 3393 (br OH), 1616, 1576, 1506, 1480, 1437,
F254, with vanillin/concentrated H2SO4 spray reagent, 1% w/v), and the
solvents were evaporated. The residue (1.5 g) was further fractionated
by Sephadex LH-20 (Sigma) column chromatography (2.5 cm × 58
cm) eluting with 1 L of 3:1:1 hexane-toluene-MeOH at a flow rate
of 0.5 mL/min, collecting ∼5 mL fractions. Fractions of similar
composition as determined by TLC were pooled, resulting in 15
fractions. Fraction 11 (81 mg) from this column was further purified
over silica gel (2.5 cm × 9 cm, Davison Chemical 100-200 mesh) by
gravity elution using a step-gradient of 100% CH2Cl2, followed by
1
1285, 1201, 1160 cm-1; H NMR (CDCl3) δ 8.08 (1H, s, H-2), 7.69
(1H, s, H-5), 7.09 (1H, d, J ) 8.6, H-6′), 7.07 (1H, s, H-8), 6.67 (1H,
d, J ) 2.6, H-3′), 6.56 (1H, dd, J ) 8.6, 2.6, H-5′), 4.06 (3H, s, OCH3-
6), 3.84 (3H, s, OCH3-4′); 13C NMR (CDCl3) δ 178.6 (CdO), 162.2
(C-4′), 158.2 (C-2′), 154.7 (C-2), 152.9 (C-9), 152.5 (C-7), 146.2 (C-
6), 130.5 (C-6′), 124.4 (C-3), 116.9 (C-10), 113.3 (C-1′), 107.9 (C-5′),