Angewandte
Chemie
Table 1: Selected physical properties for synthetic dithiolane abyssomi-
cin C 18, atrop-abyssomicin C (2), and abyssomicin C (1).[a]
18: Rf =0.31 (silica gel, EtOAc/hexanes 3:2); [a]2D5 =ꢀ39.4 (c=0.18,
CHCl3); IR (film): n˜max =3449, 2964, 2927, 2871, 1749, 1727, 1694, 1658,
1
1626, 1455 cmꢀ1; H NMR (500 MHz, CDCl3): d=6.48 (dd, J=16.7,
4.1 Hz, 1H), 6.44 (d, J=16.7 Hz, 1H), 4.57 (dd, J=4.6, 1.6 Hz, 1H),
4.53 (dd, J=4.5, 1.9 Hz, 1H), 3.36–3.28 (m, 1H), 3.27–3.18 (m, 1H),
3.17–3.07 (m, 2H), 3.05 (dd, J=3.7, 2.1 Hz, 1H), 2.83–2.74 (m, 1H),
2.65 (dd, J=12.6, 11.0 Hz, 1H), 2.40 (ddd, J=10.3, 7.0, 3.1 Hz, 1H),
1.92–1.82 (m, 2H), 1.37 (dd, J=12.6, 2.5 Hz, 1H), 1.32 (ddd, J=14.7,
7.9, 3.0 Hz, 1H), 1.20 (d, J=6.6 Hz, 3H), 1.14 (d, J=7.1 Hz, 3H),
1.13 ppm (d, J=7.2 Hz, 3H); 13C NMR (125 MHz, CDCl3): d=203.4,
171.0, 169.5, 138.4, 129.1, 107.7, 81.2, 79.1, 71.1, 65.9, 49.2, 47.8, 41.8,
40.9, 39.7, 38.6, 34.6, 24.8, 18.6, 17.9, 17.3 ppm; HRMS (ESI-TOF): calcd
for C21H27O5S2+ [M+H+]: 423.1294; found: 423.1297.
2: Rf =0.21 (silica gel, EtOAc/hexanes 3:2); colorless crystals (EtOH),
m.p.: 2208C (decomp.); [a]2D5 =ꢀ71.4 (c=0.33, MeOH); IR (film):
n˜max =3442, 2967, 2933, 2866, 1757, 1690, 1637, 1457 cmꢀ1; 1H NMR
(600 MHz, MeOD): d=6.66 (dd, J=16.5, 5.8 Hz, 1H), 6.53 (d,
J=16.6 Hz, 1H), 4.63 (dd, J=4.3, 1.5 Hz, 1H), 4.42 (dd, J=4.2, 3.0 Hz,
1H), 3.20 (dd, J=5.8, 2.9 Hz, 1H), 2.85–2.76 (m, 1H), 2.71 (dd, J=12.5,
11.1 Hz, 1H), 2.67–2.61 (m, 1H), 2.54 (dqd, J=14.3, 7.1, 3.6 Hz, 1H),
1.88 (ddd, J=15.7, 12.1, 2.5 Hz, 1H), 1.49–1.43 (m, 2H), 1.17 (d,
J=7.3 Hz, 3H), 1.15 (d, J=7.2 Hz, 3H), 1.13 ppm (d, J=6.7 Hz, 3H);
13C NMR (150 MHz, MeOD): d=203.5, 200.5, 179.4, 170.8, 140.2, 129.0,
106.2, 84.5, 81.1, 67.0, 50.6, 49.1, 43.5, 38.6, 33.7, 25.7, 18.2, 17.5,
Figure 2. a) ORTEP drawings of abyssomicin C (1)[1] and atrop-abysso-
micin C (2)[15] generated from X-ray crystallographic analysis. Spheres
are drawn at a 50% probability level. b) Computer-generated stick
modelsof 1 and 2 based on X-ray crystallographic data.
16.3 ppm; HRMS (ESI-TOF): calcd for C19H23O6 [M+H+]: 347.1489;
+
found: 347.1484.
1: Rf =0.28 (silica gel, EtOAc/hexanes 3:2); [a]2D5 =ꢀ43.1 (c=0.1,
MeOH); colorless crystals (MeOH), m.p.: 1808C (decomp.) [lit.
m.p.: 1808C (decomp.)][1]; IR (film): n˜max =3461, 2968, 2933, 2876, 1757,
1686, 1615, 1457, 1434 cmꢀ1; 1H NMR (600 MHz, MeOD): d=6.53 (d,
J=13.6 Hz, 1H), 5.97 (dd, J=13.6, 9.6 Hz, 1H), 5.05 (dd, J=6.1,
3.4 Hz, 1H), 4.56 (dd, J=3.4, 0.7 Hz, 1H), 3.50 (dqd, J=13.4, 6.7,
2.7 Hz 1H)), 2.97 (dd, J=9.6, 6.1 Hz, 1H), 2.93 (ddd, J=10.8, 7.2,
1.5 Hz, 1H), 2.75–2.69 (m, 1H), 2.69–2.64 (m, 1H), 1.99 (td, J=14.1,
11.1 Hz, 1H), 1.41 (ddd, J=14.1, 2.6, 1.6 Hz, 1H), 1.25 (dd, J=11.8,
4.8 Hz, 1H), 1.17 (d, J=7.0 Hz, 3H), 1.09 (d, J=7.2 Hz, 3H), 1.06 ppm
(d, J=6.7 Hz, 3H); 13C NMR (150 MHz, MeOD): d=206.2, 200.5,
187.5, 171.5, 135.3, 135.1, 104.6, 86.8, 78.9, 73.8, 48.1, 49.4, 43.1, 40.2,
obtaining NMR spectroscopic data for 2 in unstabilized
CDCl3, it was observed that compound 2 slowly converted
into 1, cleanly affording a 2:1 mixture of 1/2 after 24 h. The
same equilibrium (1/2 2:1) was reached from pure 1 (CDCl3,
258C, 5 days). This phenomenon may be explained by either
of two hypothetical scenarios (Scheme 3). The first (path a)
postulates that catalytic amounts of hydrochloric acid present
in CDCl3 provides activation such that the tetronate becomes
a sufficiently good leaving group, allowing the hydroxy group
at C11 to initiate an attack upon C12 to generate the epoxide
proposed for the biogenesis of the natural product.[2] This
intermediate may then exhibit enhanced torsional freedom,
allowing interconversion between the two atropisomers
before retrapping the epoxide that would freeze them in
stable conformations. Alternatively (path b), acid-catalyzed
activation of the tetronate core would leave C16 electron-
deficient and capable of drawing p-electron density from the
suitably poised double bond at C2 (C2–C16 3.19 in 2 and
3.27 in 1 from X-ray crystallographic analysis). This
bridging interaction would draw C2 even closer to C16 of
the tetronate, relieving torsional strain in the macrocycle, and
thus lowering the energy barrier to rotation of the s bond as
needed for the atropisomer interconversion. Synthetic abys-
somicin C (1) was chromatographically separated from its
atropisomer 2 and fully characterized (Table 1). Its physical
properties were identical to those reported for the natural
product.[1,2]
+
37.3, 25.9, 21.0, 19.3, 17.2 ppm; HRMS (ESI-TOF): calcd for C19H23O6
[M+H+]: 347.1489; found: 347.1485.
[a] We assume that the systematic differences (ꢁ2 ppm) between the
originally reported 13C NMR data[1] and those of our synthetic abysso-
micin C (1) are a consequence of differing calibration. We used the signal
for CD3OD at d=49.05 ppm asreference. The data provided above are
consistent with those reported by Sorensen and co-workers for their
synthetic material.[2]
increased degree of conjugation between the carbonyl group
and the double bond moiety, it was anticipated that it might
be a more powerful Michael acceptor than 1. This change in
conformation at C7 has structural ramifications throughout
the rest of the macrocyclic system, most notably the
orientation of the carbonyl group at C3. In the natural
=
=
compound 1 the O C3-C2 C16 dihedral angle is 33.88,
whereas in atrop-abyssomicin C (2) the corresponding angle
is 56.28.
Preliminary minimal inhibitory concentration (MIC)
assays of 1, 2, and 18 for antibacterial activity against
MRSA revealed that they all exhibit activity, with the non-
natural atropisomer 2 being the most potent (3.5 mgmLꢀ1) as
compared to 1 (5.2 mgmLꢀ1) and 18 (17 mgmLꢀ1).[19] Our
Thermally induced conversion of 2 into 1 (refluxing
MeOH or toluene) was unsuccessful, leading either to no
reaction or decomposition at higher temperatures (1808C,
xylenes, microwave irradiation). Surprisingly, however, while
Angew. Chem. Int. Ed. 2006, 45, 3256 –3260
ꢀ 2006 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
3259