Journal of Medicinal Chemistry
Article
anhydrous CH2Cl2 (0.5 mL) and DMF (0.45 mL) was treated with
DIEA (10 μL, 0.051 mmol) for 10 min at room temperature under an
argon atmosphere. HATU (16.7 mg, 0.044 mmol) was added, and the
reaction mixture was stirred for an additional 10 min. After that, the
monomer amine 9 (31.9 mg, 0.022 mmol) in anhydrous CH2Cl2
(0.55 mL) and the mixture were stirred for 40 h at the same
temperature. After evaporation of the solvent, the crude material was
dissolved in CH2Cl2 (15 mL), washed with 5% citric acid solution (2
× 15 mL), saturated NaHCO3 solution (2 × 15 mL), H2O (2 × 15
mL), and brine (2 × 15 mL). The organic layer was dried (MgSO4)
and concentrated under reduced pressure and the crude was purified
by column chromatography (AcOEt/MeOH, 90:10 to 80:20) to
provide compound 27 (22 mg, 53%) as a white foam. IR (ATR):
3354, 3330, 2960, 2923, 2853, 1746, 1733, 1656, 1649, 1640, 1633,
1622, 1615, 1570, 1541, 1460, 1436, 1428, 1371, 1259, 1233, 1227,
1158, 1153, 1129, 1081, 1075, 1035, 800 cm−1. 1H NMR (400 MHz,
CDCl3) δ 1.43 (s, 9H, t-Bu), 1.54−1.85 (m, 12H, 3 × CH2CH2CH2,
CH2CH2CO spacer, CH2CH2CH2CO spacer, CH2CH2NH
spacer), 1.90−2.16 (m, 36H, 9 × OAc, 3 × NHAc), 2.20−2.70 (m,
2957, 2924, 1746, 1647, 1644, 1618, 1575, 1540, 1458, 1440, 1419,
1
1370, 1342, 1225, 1134, 1090, 1047, 932, 899 cm−1. H NMR (400
MHz, CDCl3) δ 1.58−1.88 (m, 12H, 3 × CH2CH2CH2, CH2CH2C
O spacer, CH2CH2CH2CO spacer, CH2CH2NH spacer), 1.95−
2.15 (m, 39H, 12 × OAc, CCH, CH2CO spacer), 2.19−2.71 (m,
6H, 3 × CH2CO peptoid), 3.27−3.76 (m, 25H, 6 × CH2N
peptoid, 3 × CH2-O-Man, CH2NH spacer, CH2-O agonist, CH3-O),
3.9−4.01 (m, 5H, NH−CH2-CCH, 3 × H5′), 4.1 (m, 3H, 3 × H6′),
4.28 (dd, 3H, J = 4.8, 12.2 Hz, 3 × H6′), 4.41 (m, 2H, CH2-O
agonist), 4.81 (m, 3H, 3 × H1′), 5.00 (m, 2H, CH2N agonist), 5.17−
5.32 (m, 9H, 3 × H2′, 3 × H3′, 3 × H4′), 5.82 (m, 2H, NH2), 7.39−
7.88 (m, 6H, 4 × CH aromatic, NH spacer, NH-CH2CH), 10.1 (m,
1H, NH cycle). HRMS (ESI): calculated for C85H120N10O38 [M +
H]2+, 944.3882; found, 944.3833.
TLR7 Agonist−Spacer−O-GalNAc β-Tripeptoid Conjugate
31. A procedure similar to that for compound 11 was used. The
product 31 was obtained (12.6 mg, quantitative) as a white foam from
27. RP-HPLC tR, 7.4 min, MeOH/H2O 60:40, 95.9% purity, 214 nm.
IR (ATR): 3501, 3181, 2928, 2853, 1720, 1642, 1625, 1615, 1555,
1465, 1374, 1340, 1153, 1123, 1060, 1039, 971 cm−1. 1H NMR (400
MHz, CD3OD) δ 1.42−1.45 (m, 9H, t-Bu), 1.55−1.71 (m, 6H, m,
CH2CH2CO spacer, CH2CH2CH2CO spacer, CH2CH2NH
spacer), 1.75−1.93 (m, 6H, 3 × CH2CH2CH2 peptoid), 1.99−2.03
t
8H, 3 × CH2CO2 Bu, CH2CO spacer), 3.30−3.74 (m, 25H, 6 ×
CH2N peptoid, 3 × CH2-O-GalNAc, CH2NH spacer, CH2-O, CH3-
O), 4.05−4.27 (m, 9H, 3 × H5′, 6 × H6′), 4.43 (m, 2H, CH2-O),
4.53−4.64 (m, 3H, 3 × H2′), 4.85−5.08 (m, 5H, 3 × H1′, CH2N
agonist), 5.15 (m, 3H, 3 × H3′), 5.37 (m, 3H, 3 × H4′), 5.77 (m, 2H,
NH2), 6.76−7.73 (m, 8H, 4 × CH aromatic, NH spacer, 3 × NHAc),
10.16 (m, 1H, NH cycle). HRMS (ESI): calculated for
C86H128N12O36 [M + H]2+, 952.4277; found, 952.4245.
t
(m, 9H, 3 × NHAc), 2.38−2.88 (m, 8H, 3 × CH2CO2 Bu, CH2CO
spacer), 3.33−3.90 (m, 40H, 6 × CH2N peptoid, 3 × CH2-O-
GalNAc, 3 × H3′, 3 × H4′, 3 × H5′, 6 × H6′, CH2NH spacer, CH2-O,
CH3-O), 4.28 (m, 3H, 3 × H2′), 4.45 (m, 2H, CH2-O), 4.75−4.83 (m,
3H, 3 × H1′), 5.01 (s, 2H, CH2N agonist), 7.47 (d, 2H, J = 8.2 Hz, 2
× CH aromatic), 7.78 (d, 2H, J = 8.2 Hz, 2 × CH aromatic). HRMS
(ESI): calculated for C68H110N12O27 [M + H]2+, 763.3802; found,
763.3774.
TLR7 Agonist−Spacer−O-Mannosylated β-Tripeptoid Con-
jugate 28. A procedure similar to that for compound 27 was used.
Compound 26 was conjugated to the glycopeptoid 10 to yield
compound 28 (23 mg, 53%) as a white foam. IR (ATR): 3352, 3329,
2962, 2925, 2858, 1745, 1733, 1657, 1645, 1640, 1633, 1628, 1617,
1571, 1541, 1460, 1438, 1428, 1378, 1260, 1233, 1222, 1159, 1153,
TLR7 Agonist−Spacer−O-Mannosylated β-Tripeptoid Con-
jugate 32. A procedure similar to that for compound 11 was used.
The product 32 was obtained (3.9 mg, quantitative) as a white foam
from 28. IR (ATR): 3508, 3175, 2928, 2859, 1710, 1645, 1630, 1620,
1560, 1465, 1373, 1345, 1155, 1120, 1061, 1040, 971 cm−1. 1H NMR
(400 MHz, CD3OD) δ 1.42−1.45 (m, 9H, t-Bu), 1.57−1.71 (m, 6H,
CH2CH2CO spacer, CH2CH2CH2CO spacer, CH2CH2NH
spacer), 1.78−1.95 (m, 6H, 3 × CH2CH2CH2 peptoid), 2.32−2.84
1
1130, 1081, 1076, 1034, 800 cm−1. H NMR (400 MHz, CDCl3) δ
1.42 (s, 1H, t-Bu), 1.58−1.90 (m, 12H, 3 × CH2CH2CH2,
CH2CH2CO spacer, CH2CH2CH2CO spacer, CH2CH2NH
spacer), 1.93−2.15 (m, 36H, 12 × OAc), 2.25−2.72 (m, 8H, 3 ×
t
CH2CO2 Bu, CH2CO spacer), 3.34−3.76 (m, 25H, 6 × CH2N
peptoid, 3 × CH2-O-Man, CH2N spacer, CH2-O, CH3-O), 3.97 (m,
3H, 3 × H5′), 4.09 (m, 3H, 3 × H6′), 4.28 (dd, 3H, J = 4.7, 12.1 Hz, 3
× H6′), 4.41 (m, 2H, CH2-O), 4.81 (m, 3H, 3 × H1′), 5.00 (m, 2H,
CH2N agonist), 5.16−5.31 (m, 9H, 3 × H2′, 3 × H3′, 3 × H4′), 5.73
(m, 2H, NH2), 7.36−7.44 (m, 3H, 2 × CH aromatic, NH spacer),
7.80 (d, 2H, J = 7.9 Hz, 2 × CH aromatic), 10.07 (m, 1H, NH cycle).
HRMS (ESI): calculated for C86H125N9O39 [M + H]2+, 953.9037;
found, 953.9047.
t
(m, 8H, 3 × CH2CO2 Bu, CH2CO spacer), 3.39−3.98 (m, 43H, 6
× CH2N peptoid, 3 × CH2-O-Man, 3 × H2′, 3 × H3′, 3 × H4′, 3 × H5′,
6 × H6′, CH2NH spacer, CH2-O, CH3-O), 4.45 (m, 2H, CH2-O), 4.72
(m, 3H, 3 × H1′), 5.07 (s, 2H, CH2N agonist), 7.50 (d, 2H, J = 8.1
Hz, 2 × CH aromatic), 7.80 (d, 2H, J = 7.7 Hz, 2 × CH aromatic).
HRMS (ESI): calculated for C62H101N9O27 [M + H]2+, 701.8403;
found, 701.8415.
TLR7 Agonist−Spacer−O-GalNAc β-Tripeptoid Conjugate
33. A procedure similar to that for compound 11 was used. The
product 33 was obtained (12.1 mg, quantitative) as a white foam from
29. RP-HPLC tR, 11.0 min, 10−60% MeOH/H2O, 85.6% purity, 205
nm. IR (ATR): 3342, 3264, 2950, 2925, 2853, 2364, 1718, 1710,
1648, 1637, 1618, 1560, 1545, 1460, 1450, 1439, 1419, 1377, 1342,
1154, 1121, 1039, 787 cm−1. 1H NMR (400 MHz, CD3OD) δ 1,58−
1,71 (m, 6H, CH2CH2CO spacer, CH2CH2CH2CO spacer,
CH2CH2NH spacer), 1.78−1.93 (m, 6H, 3 × CH2CH2CH2), 1.99−
2,05 (m, 9H, 3 × NHAc), 2.39−2.85 (m, 9H, CCH, 3× CH2CO
peptoid, CH2CO spacer), 3.36−3.95 (m, 42H, NH−CH2-CCH,
6 × CH2N peptoid, 3 × CH2-O-GalNAc, 3 × H3′, 3 × H4′, 3 × H5′, 3
× H5′, CH2NH spacer, CH2-O agonist, O−CH3), 4.28 (m, 3H, 3 ×
H2′), 4.40 (m, 2H, CH2-O agonist), 4.76−4.84 (m, 3H, 3 × H1′), 5.04
(s, 2H, CH2N agonist), 7.47 (d, 2H, J = 8.2 Hz, 2 × CH aromatic),
7.78 (d, 2H, J = 8.2 Hz, 2 × CH aromatic). HRMS (ESI): calculated
for C67H105N13O26 [M + H]2+, 753.8642; found, 753.8641.
TLR7 Agonist−Spacer−O-GalNAc β-Tripeptoid Conjugate
29. A procedure similar to that for compound 27 was used.
Compound 26 was conjugated to the glycopeptoid 15 to yield
compound 29 (20 mg, 48%) as a white foam. RP-HPLC tR, 9.0 min,
MeOH/H2O 70:30, 98.4% purity, 254 nm. IR (ATR): 3306, 3230,
2960, 2923, 2853, 2354, 1745, 1731, 1648, 1639, 1615, 1571, 1546,
1466, 1426, 1415, 1371, 1343, 1229, 1162, 1130, 1129, 1075, 1045,
1
781 cm−1. H NMR (400 MHz, CDCl3) δ 1.39−1.88 (m, 12H, 3 ×
CH2CH2CH2, CH2CH2CO spacer, CH2CH2CH2CO spacer,
CH2CH2NH spacer), 1.94−2.16 (m, 39H, 9 × OAc, 3 × NHAc, C
CH, CH2CO spacer), 2.3−2.68 (m, 6H, 3 × CH2CO peptoid),
3.30−3.74 (m, 25H, 6 × CH2N peptoid, 3 × CH2-O-GalNAc,
CH2NH spacer, CH2-O agonist, CH3-O), 3.94−4.19 (m, 11H, NH−
CH2-CCH, 3 × H5′, 6 × H6′), 4.43 (m, 2H, CH2-O agonist), 4.58
(m, 3H, 3 × H2′), 4.83−5.04 (m, 5H, 3 × H1′, CH2N agonist), 5.09−
5.22 (m, 3H, 3 × H3′), 5.38 (m, 3H, 3 × H4′), 5.76 (m, 2H, NH2),
6.86−7.72 (m, 9H, 4 × CH aromatic, NH spacer, 3 × NHAc, NH-
CH2CH), 10.16 (m, 1H, NH cycle). HRMS (ESI): calculated for
C85H123N13O35 [M + H]2+, 942.9122; found, 942.9157.
TLR7 Agonist−Spacer−O-Mannosylated β-Tripeptoid Con-
jugate 30. A procedure similar to that for compound 27 was used.
Compound 26 was conjugated to the glycopeptoid 16 to yield
compound 30 (22 mg, 50%) as a white foam. RP-HPLC tR, 11.7 min,
MeOH/H2O 70:30, 92.6% purity, 210 nm. IR (ATR): 3355, 3333,
TLR7 Agonist−Spacer−O-Mannosylated β-Tripeptoid Con-
jugate 34. A procedure similar to that for compound 11 was used.
The product 34 was obtained (10.8 mg, quantitative) as a white foam
from 30. RP-HPLC tR, 10.6 min, 10−60% MeOH/H2O, 89.8% purity,
210 nm. IR (ATR): 3532, 3120, 2924, 2855, 2359, 1727, 1707, 1663,
1617, 1564, 1465, 1419, 1343, 1200, 1132, 1062, 1030, 1028, 972
cm−1
.
1H NMR (400 MHz, CD3OD) δ 1.57−1.71 (m, 6H,
K
J. Med. Chem. XXXX, XXX, XXX−XXX