B. S. Jursic, D. M. Neumann / Tetrahedron Letters 42 (2001) 8435–8439
8439
at 80°C for 30 min. The yield of yellow powder was 16.1
g (95%). 1H NMR (DMSO-d6) l 11.768 (1H, s, NH),
11.035 (1H, s, NH), and 2.563 ppm (3H, s, CH3); 13H
NMR (DMSO-d6) l 191.343, 168.146, 158.736, and
145.502 four different carbonyls, 91.913 (C-5 from barbi-
turic acid), and 20.385 ppm (C from acetyl). MS (electro-
spray, ES+, in methanol with 0.1% CH3COOH) 215.2
(M+2Na) and 251.1 (M+Na+HOAc).
are recorded in DMSO-d6 then the hydrogen–hydrogen
splitting signals for the zwitterionic form of the Schiff
base 2 are observed. For instance, in the 1H NMR
spectra of 2f at 10.30 ppm there is a double splitting of
the triplet for CHꢁNH-CH2-, at 8.2 ppm a doublet for
-CHꢁNH-, and a double triplet for NH-CH2-CH2-. Due
to the hydrogen–deuterium exchange in DMSO-d6–D2O
(3:1) as an NMR solvent (NH is now mostly ND) the
spectra is changed. There is no NH signal and therefore
CHꢁ becomes a singlet and N-CH2- is a simple triplet.
22. Schiff bases made from 5-acetylbarbituric acids have
substantially lower solubility in methanol than ones made
from 5-formyl-1,3-dimethybarbituric acid. All three com-
pounds of this series (2a, 2b, and 2c) are not soluble at 5
mmol concentration per 200 mL of refluxing methanol.
These compounds are isolated as crystalline products by
filtration of the hot reaction suspension. They are ꢀ98%
pure. If necessary, these compounds can be further
purified by crystallization from acetic acid.
17. For instance, see: Toth, I.; Dekany, G.; Kellam, B.
Preparation of Cyclic Compounds as Protecting and
Linking Groups for Organic Synthesis. International
Patent WO 9915510, 1999. Sasaki, I.; Gaudemer, A.;
Chiaroni, A.; Riche, C. Inorg. Chim. Acta 1986, 112, 119.
Hasegawa, S.; Imamura, S.; Muto, M.; Okamoto, Y.
Japanese Patent Jpo1163129, 1989; Mohsen, M. K. Phar-
mazie 1982, 37, 147.
18. Based on the structural–activity relationship with already
known histone deacetylase inhibitors as anticancer com-
pounds, we have designed barbituric acid derivatives that
can structurally resemble these inhibitors. For more
information, see: (a) Finnin, M. S.; Donigian, J. R.;
Cohen, A.; Richon, V. M.; Rifkind, R. A.; Marks, P. A.;
Breslow, R.; Pavletich, N. P. Nature 1999, 401, 188; (b)
Coffey, C. D.; Kutko, M. C.; Glick, R. D.; Butler, L. M.;
Heller, G.; Rifkind, R. A.; Marks, P. A.; Richon, V. M.;
La Quaglia, M. P. Cancer Res. 2001, 61, 3591; (c)
Richon, V. M.; Emiliani, S.; Verdin, E.; Webb, Y.;
Breslow, R.; Rifkind, R. A.; Marks, P. A. Proc. Natl.
Acad. Sci. USA 1988, 95, 3003.
23. Cordes, E. H.; Jencks, W. P. J. Am. Chem. Soc. 1963, 85,
2843 and references cited therein.
24. The structural assignment was based on the chemical
shifts for b-alanine in DMSO-d6 as the NMR solvent.
Reference for the chemical shift is the middle signal of
the five signals for DMSO as the solvent at 2.49 ppm.
b-Alanine is slightly soluble in DMSO. All hydrogens on
the nitrogens are exchanged with deuterium from the
solvent, therefore besides the two huge signals for the
solvent and water, two additional triplets, one at 2.798
ppm (J=4.5 Hz) for -NCH2- and the other at 2.060 ppm
(J=4.5 Hz) for -CH2CO- are observed. With the assump-
tion that the chemical shifts for -NCH2- of 2a in its
carbonꢀcarbon double bond isomer 2a CꢀC is similar to
b-alanine, the chemical shift at 2.973 ppm is assigned to
-NCH2- in the 2a CꢀC isomer and the chemical shifts at
3.632 and 3.616 ppm to -NHCH2- in the 2a CꢀN isomer.
25. Morgan, L. R.; Rodgers, A. H.; LeBlanc, B. W.; Boue, S.
M. Biorg. Med. Chem. Lett. 2001, 11, 2193 and references
cited therein.
26. Table 3: Usually preparation of nitrophenylhydrazones of
barbituric acids involve refluxing the corresponding
hydrazine and 5-acylbarbituric acid in methanol, fol-
lowed by the isolation and purification of the product.
Physical properties of the product determine what proce-
dure will be used for the hydrazone isolation and purifi-
cation. Preparation of 5-[(4-nitrophenyl)hydrazonomethyl]-
pyrimidine-2,4,6-trione (3a). A methanol (200 mL) sus-
pension of 5-formylbarbituric acid (1.56 g; 10 mmol) and
4-nitrophenylhydrazine (1.53 g; 10 mmol) was refluxed
overnight. After cooling to room temperature, the solid
was separated by filtration, slurred in hot water, washed
with methanol and crystallized from acetic acid (500 mL)
to give 2.3 g (80%) of pure compound. 1H NMR
(DMSO-d6) l 11.22 (1H, broad singlet), 10.847 (1H, s),
10.749 (1H, s), 9.859 (1H, s), 8.123 (2H, d, J=9.0 Hz),
7.985 (1H, s), and 6.819 (2H, d, J=9 Hz) ppm; 13C NMR
19. Some of the barbituric acid derivatives show encouraging
differentiation activity on the human leukemia cancer cell
lines. Results will be published elsewhere.
20. Typical procedure for the preparation of Schiff bases
with v-aminoalkanoic acids and 5-acyl barbituric acids.
Preparation of 6-[(1,3-dimethyl-2,4,6-trioxo-hexahydro-
pyrimidin-5-ylmethylene)-amino]-hexanoic acid (2f).
A
mixture of 5-formyl-1,3-dimethylbarbituric acid (0.92 g; 5
mmol) and 5-aminohexanoic acid (0.655 g; 5 mol) in
methanol (200 mL) was refluxed for 5 h. Methanol was
evaporated to a solid residue and the solid residue was
re-dissolved in a small amount of hot methanol (ꢀ50
mL). This solution was left at room temperature to
slowly evaporate to 1/5 of the volume. The formed white
needles of product were separated by filtration, washed
with cold methanol (3×5 mL) and dried at 60°C for 30
min to afford the pure product. The yield is 1.3 g (87%).
1H NMR (DMSO-d6:D2O=3:1)19 l 8.084 (1H, s), 3.414
(2H, d, J=6.7 Hz, NCH2), 3.080 (6H, d, J=0.6 Hz, two
NCH3), 2.180 (2H, t, J=7.2 Hz), 1.489 (m, 4H), and
1.215 ppm (m, 2H); 13C NMR (DMSO-d6:D2O=3:1) d
173 (-COO), 161.380, 160.484, and 156.653 (three car-
bonyls carbons from the barbituric acid ring), 149.465
(-CHꢁN-), 86.793 (C-5 from barbituric acid ring), 47.165
(NCH2), 30.967, 26.714, 22.599, and 21.346 (four carbons
of five methylene carbons of hexanoic acid moiety) and
25.068 and 24.412 ppm (two carbons of N-CH3). MS
(electrospray, ES+, in methanol with 0.1% CH3COOH),
320.1 and 320.3 (M+Na), 617.0 and 618.1 (2M+Na).
21. The 1H NMR spectra of the Schiff base 2 strongly
depend on the pH and the capability of the H–D
(DMSO-d6)
l
155.488, 150.018, 147.163, 136.005,
122.196, 108.227, 108.227, and 87.062 ppm; anal. calcd
for C11H9N5O5 (MW 291.2): C, 45.37; H, 3.11; N, 24.05.
Found: C, 45.04; H, 3.38; N, 23.88%.
1
exchange between 2 and the solvent. If H NMR spectra