6564
J. R. Cashman et al. / Bioorg. Med. Chem. Lett. 20 (2010) 6560–6564
17. Day, C. L.; Chen, L.; Richardson, S. J.; Harrison, P. J.; Huang, D. C. S.; Hings, M. G.
J. Biol. Chem. 2005, 280. High-throughput FP assay: Chemical inhibitors were
dissolved in 10% DMSO at 100 M stock concentration. From this solution, 4
were incubated with 8 L of Bfl-1 working solution (7.4 nM GST-Bfl-1 fusion
Acknowledgments
l
lL
This work was funded by grant 1 X01 MH077632-01 and UO1-
CA-113318 to J.C.R. We thank Dr. Ying Su for his help with the
work. We thank Alyssa M. Morgosh for her help in providing ana-
lytical data for the manuscript. We thank Dr. Marion Lanier for her
careful editing of the manuscript.
l
protein in 25 mM Bis-Tris pH 7.0, 1 mM TCEP, 0.005% Tween 20) at room
temperature away from direct sunlight in 384-well black plates (Greiner Bio-
One, Monroe, NC). After 1 h, FITC-Bid BH3 peptide (8 lL of 5.6 nM in 25 mM
Bis-Tris pH 7.0, 1 mM TCEP, 0.005% Tween 20) was added, and plates were
incubated at room temperature away from direct sunlight. Fluorescence
polarization was measured using an Analyst GT plate reader (Molecular
Devices, Inc., Sunnyvale, CA) using fluorescein filters (excitation filter 485 nm,
emission filter 530 nm, dichroic mirror # 505 nm). Data analysis was done
using CBIS software (ChemInnovations, Inc., San Diego, CA). Dose–response
confirmation: Chemical inhibitors were serially diluted in DMSO then in water
so final concentration was in 10% DMSO. Ten concentrations of each compound
Supplementary data
Supplementary data associated with this article can be found, in
were used. Each inhibitor (4
(Greiner Bio-One, Monroe, NC) followed by GST-Bfl-1 solution described above
(8 L). Plates were incubated for 1 h at 4 °C. FITC-Bid BH3 peptide solution
described above (8 L) was added, and plates were incubated for 4 h at room
lL) was transferred to 384-well black plates
l
References and notes
l
temperature. Fluorescence polarization was measured at described above. Data
analysis was performed using sigmoidal dose–response equation through non-
linear regression.
1. Reed, J. C. Nat. Rev. Drug Discov. 2002, 1, 111.
2. Beroukhim, R.; Mermel, C. H.; Porter, D.; Wei, G.; Raychaudhuri, S.; Donovan, J.;
Barretina, J.; Boehm, J. S.; Dobson, J.; Urashima, M.; Mc Henry, K. T.; Pinchback,
R. M.; Ligon, A. H.; Cho, Y. J.; Haery, L.; Greulich, H.; Reich, M.; Winckler, W.;
Lawrence, M. S.; Weir, B. A.; Tanaka, K. E.; Chiang, D. Y.; Bass, A. J.; Loo, A.;
Hoffman, C.; Prensner, J.; Liefeld, T.; Gao, Q.; Yecies, D.; Signoretti, S.; Maher, E.;
Kaye, F. J.; Sasaki, H.; Tepper, J. E.; Fletcher, J. A.; Tabernero, J.; Baselga, J.; Tsao,
M. S.; Demichelis, F.; Rubin, M. A.; Janne, P. A.; Daly, M. J.; Nucera, C.; Levine, R.
L.; Ebert, B. L.; Gabriel, S.; Rustgi, A. K.; Antonescu, C. R.; Ladanyi, M.; Letai, A.;
Garraway, L. A.; Loda, M.; Beer, D. G.; True, L. D.; Okamoto, A.; Pomeroy, S. L.;
Singer, S.; Golub, T. R.; Lander, E. S.; Getz, G.; Sellers, W. R.; Meyerson, M.
Nature 2010, 463, 899.
18. Peptide Synthesis: FITC-Bid BH3 peptide was synthesized on the ACT 350
Multiple Peptide Synthesizer using Fmoc chemistry on Wang resin. FITC was
coupled to the N-terminus while the peptide was still on the resin. Peptide was
cleaved from the resin using 94% TFA/2.5% H2O/2.5% EDT/1% TIS for 2 h at room
temperature. Crude peptide was purified on a Gilson HPLC with 0.1% TFA
water/acetonitrile and characterized by mass spectroscopy on an Applied
Biosystems Voyager System 6264 using MALDI-TOF ionization. TR-FRET Assay:
Dose–response curves contained 10 concentrations of compounds obtained
using twofold serial dilution. Compounds were serially diluted in 100% DMSO,
and then diluted with water to 10% final DMSO concentration. Compounds in
3. Johnstone, R. W.; Ruefli, A. A.; Lowe, S. W. Cell 2002, 108, 153.
4. Chen, L.; Willis, S. N.; Wei, A.; Smith, B. J.; Fletcher, J. I.; Hinds, M. G.; Colman, P.
M.; Day, C. L.; Adams, J. M.; Huang, D. C. S. Mol. Cell 2005, 17, 393.
5. Kuwana, T.; Bouchier-Hayes, L.; Chipuk, J. E.; Bonzon, C.; Sullivan, B. A.; Green,
D. R.; Newmeyer, D. D. Mol. Cell 2005, 7, 525.
6. Vogler, M.; Dinsdale, D.; Dyer, M. J. S.; Cohen, G. M. Cell Death Differ. 2009, 16, 360.
7. Kitada, S.; Leone, M.; Sareth, S.; Zhai, D.; Reed, J. C.; Pellecchia, M. J. Med. Chem.
2003, 46.
10% DMSO (4
white small-volume plates (784075). Each compound concentration was
assayed in duplicate wells. Columns 1–2 and 23–24 contained 4 L of 10%
DMSO. Assay buffer (8 L of 25 mM Bis-Tris, pH 7.0, 1 mM TCEP, 0.005% Tween
20) was added to columns 1–2, which were reserved for positive controls,
using a WellMate bulk dispenser (Matrix). Bfl-1 working solution (8 L of
7.4 nM GST-Bfl-1 in assay buffer) was added to columns 3–24 using WellMate
bulk dispenser (Matrix). Columns 23–24 represent negative control wells.
Plates were incubated for 1 h at +4 °C. Freshly prepared FITC-Bid/Tb-Ab
lL) were transferred into columns 3–22 of Greiner 384-well
l
l
l
8. Leone, M.; Zhai, D.; Sareth, S.; Kitada, S.; Reed, J. C.; Pellecchia, M. Cancer Res.
2003, 63, 8118.
working solution (8 lL of 5.6 nM FITC-Bid and 2.5 nM Tb-Ab in assay buffer)
9. Oltersdorf, T.; Elmore, S. W.; Shoemaker, A. R.; Armstrong, R. C.; Augeri, D. J.;
Belli, B. A.; Bruncko, M.; Deckwerth, T. L.; Dinges, J.; Hajduk, P. J.; Joseph, M. K.;
Kitada, S.; Korsmeyer, S. J.; Kunzer, A. R.; Letai, A.; Li, C.; Mitten, M. J.;
Nettesheim, D. G.; Ng, S.; Nimmer, P. M.; O’Connor, J. M.; Oleksijew, A.; Petros,
A. M.; Reed, J. C.; Shen, W.; Tahir, S. K.; Thompson, C. B.; Tomaselli, K. J.; Wang,
B.; Wendy, M. D.; Zhang, H.; Fesik, S. W.; Rosenberg, S. H. Nature 2005, 435, 677.
10. Pellecchia, M.; Reed, J. C. Curr. Pharm. Des. 2004, 10, 1387.
11. Wei, J.; Kitada, S.; Rega, M. F.; Stebbins, J. L.; Zhai, D.; Cellitti, J.; Yuan, H.;
Emdadi, A.; Dahl, R.; Zhang, Z.; Yang, L.; Reed, J. C.; Pellecchia, M. J. Med. Chem.
2009, 52, 4511.
12. Degterev, A.; Lugovskoy, A.; Cardone, M.; Mulley, B.; Wagner, G.; Mitchison, T.;
Yuan, J. Nat. Cell Biol. 2001, 3, 173.
13. Zhai, D.; Jin, C.; Satterthwait, A. C.; Reed, J. C. Cell Death Differ. 2006, 13, 1419.
14. Holmgreen, S. P.; Huang, D. C. S.; Adams, J. M.; Cory, S. Cell Death Differ. 1999, 6,
525.
was added to the whole plate using WellMate bulk dispenser (Matrix). Plates
were incubated for 4 h at room temperature protected from direct light.
Fluorescence was measured on an M5 plate reader, Molecular Devices
(excitation: 340 nm, emission: 490 and 520 nm, cutoff: 475 and 515 nm,
respectively) in Time Resolved (TR) mode with signal integrated for 1 ms after
initial delay 0.1 ms and averaged from five readings. The TR-FRET signal was
calculated as the ratio of TR-Fluorescence at 520 nm to TR-Fluorescence at
490 nm. Data analysis was done using a sigmoidal dose–response equation
through non-linear regression. Statistical Analysis: Analysis of the inhibition
kinetics was done with Graphpad Prism (San Diego, CA) software. A website
explaining the meaning of SEM (reported as in the IC50 data in the tables) can
19. Zhai, D.; Jin, C.; Shiau, C.-w.; Kitada, S.; Satterthwait, A. C.; Reed, J. C. Mol.
Cancer Ther. 2008, 7, 1639.
20. Hanaineh-Abdelnour, L.; Bayyuk, S.; Theodorie, R. Tetrahedron 1999, 55, 11859.
15. Lee, H. H.; Dadgostar, H.; Cheng, Q.; Shu, J.; Cheng, G. Proc. Natl. Acad. Sci. U.S.A.
1999, 96, 9136.
16. Werner, A. B.; de Bries, E.; Tait, S. W. G.; Bontjer, I.; Borst, J. J. Biol. Chem. 2002,
277, 22781.