Bioconjugate Chemistry
Technical Note
transferred to a separatory funnel containing diethyl ether. The
organic layer was washed with 0.2 N HCl (3×), and then with
water (2×). The organic layer was collected and subjected to
reduced pressure to remove solvent. 176 mg (92%) of 12 was
lyophilized overnight. The dendron was dissolved in 1 mL
DMF, and DIEA (44 uL, 32 mg, 0.043 mmol, 10 equiv) was
added. Compound 9 (12 mg, 0.050 mmol, 2 equiv) was
premixed with HATU (16 mg, 0.043 mmol, 1.7 equiv) in 200
uL of DMF; to which DIEA (44 uL, 32 mg, 0.25 mmol, 10
equiv) was then added. This solution was then added to the
dendron and stirred at room temperature for 20 min. For
workup, DCM (10 mL) was added, and the organic solution
was washed with water (1×), 0.1 N HCl (3×), and then water
(1×). After evaporation, the residue was left to dry overnight
under high vacuum, to give an oil.
Increasing Dendron Generation. The sixteen ethyl esters of
the dendron were hydrolyzed in 1 mL of 1.0 N NaOH and 1
mL ethanol, then left to stir overnight at ambient temperature.
The volatiles were then removed under reduced pressure, and
residue was later transferred to a separatory funnel and then
neutralized with 1.0 N HCl. A solution of diethyl ether, tBuOH,
and DCM (6:3:1; v:v:v) was added and the organic layer was
washed with 0.1 N HCl (3×), then collected and evaporated
under vacuum. The residual brown oil was diluted in anhydrous
DMF (2 mL), and 7 (116 mg, 0.384 mmol, 16 equiv) was
added followed by DIEA (134 uL, 99 mg, 0.768 mmol, 32
equiv), then HATU (124 mg, 0.326 mmol, 0.041 equiv). The
reaction was allowed to proceed for 20 min under stirring, at
which point the mixture was transferred to a separatory funnel
with diethyl ether and DCM. The organic layer was washed
with 0.1 N HCl (3×), then water (2×), before it was collected
and evaporated under reduced pressure. 161 mg (79%) of 14
1
obtained as a tan oil, and used without further purification. H
NMR (CDCl , 600 MHz) δ = 4.12 (m, J = 7.1, 2.8 Hz, 16H),
3
3
3
3
.28 (q, J = 7.6 Hz, 14H), 3.21 (q, 16H), 2.83 (s, 3H), 2.29 (m,
0H), 1.65 (m, 30H), 1.54 (m, 30H), 1.45 (s, 9H), 1.31 (m,
1
3
0H), 1.26 (q, J = 6.9 Hz, 24H). C NMR (CDCl , 600 MHz)
3
δ = 173.68, 173.42, 172.52, 172.09, 79.07, 60.34, 60.21, 47.84,
4
2
2
5.97, 45.85, 45.78, 34.25, 34.12, 34.10, 33.07, 32.87, 29.22,
8.92, 28.50, 27.79, 27.74, 27.50, 27.04, 26.87, 26.59, 26.44,
5.34, 25.28, 25.16, 25.10, 24.73, 24.67, 14.27, 14.26. ESI-MS
+
(m/z) for C H N O (exact mass 2059.48): [M+H] calc.
12
202
8
25
2
+
2060.49; [M+2H] calc. 1030.75, obs. 1031.59.
3
Generation 3 (G ) Dendron (13). Compound 12 (90 mg,
0.043 mmol) was dissolved in 5 mL ethanol, and 4 mL of 2.0 N
NaOH was added. The hydrolysis was conducted in a 40 °C
water bath for 1 h. The solution was transferred to a separatory
funnel and then neutralized with 1.0 N HCl. A solution of
diethyl ether and DCM (10:1; v:v) was added and the organic
layer was washed with 0.1 N HCl (3×). The organic layer was
collected and subjected to reduced pressure to remove solvent.
The resulting oil was diluted in DMF (4 mL). To this, 7 (245
mg, 0.09 mmol, 16 equiv) was added followed by DIEA (280
uL, 207 mg, 1.6 mmol, 4 equiv). HATU (233 mg, 0.6 mmol, 6
equiv) was first dissolved in DMF (1 mL) then added. The
reaction was allowed to proceed for 20 min, at which point the
reaction was partially concentrated in vacuo, and the residue
was transferred to a separatory funnel preloaded with a diethyl
ether and DCM. The organic layer was washed with 0.1 N HCl
was obtained as a brown oil, which was used without further
1
purification. H NMR (CDCl , 600 MHz) δ = 4.12 (m, J = 7.1,
3
2.8 H, 64H), 3.28−3.21 (m, 140H), 2.97 (m, 3H), 2.90 (m,
3H), 2.83 (s, 3H), 2.29 (m, 130H), 1.65 (m, 130H), 1.55 (m,
(
3×) and with water (2×). Evaporation under reduced pressure
provided 168 mg (95% crude yield) of 13 was obtained as a
light brown oil, and was used without further purification. H
130H), 1.45 (s, 9H), 1.32 (m, 130H), 1.25 (q, J = 6.8 Hz,
1
13
96H). C NMR (CDCl , 600 MHz) δ = 173.66, 173.39,
3
NMR (CDCl , 600 MHz) δ = 4.12 (m, J = 7.1, 2.9 Hz, 32H),
172.41, 172.03, 60.31, 60.19, 47.88 47.80, 45.98, 45.81, 45.74,
34.25, 34.12, 34.10, 33.14, 33.09, 32.90, 29.23, 28.92, 28.50,
27.79, 27.51, 27.19, 27.07, 26.94, 26.87, 26.59, 26.43, 25.26,
25.14, 24.73, 24.67, 24.65, 14.29. ESI-MS (m/z) for
3
3
6
6
.28 (q, J = 7.5 Hz, 30H), 3.20 (q, 32H), 2.83 (s, 3H), 2.29 (m,
2H), 1.65 (m, 62H), 1.54 (m, 62H), 1.44 (s, 9H), 1.31 (m,
1
3
2H), 1.26 (q, J = 6.9 Hz, 48H). C NMR (CDCl , 600 MHz)
3
5
+
δ = 173.67, 173.43, 172.42, 172.08, 60.32, 60.21, 47.86, 47.82,
C462H828N O (exact mass: 8438.08): [M+5H] calc.
34 99
6+
4
2
2
5.82, 45.76, 34.25, 34.13, 34.10, 33.09, 32.90, 29.21, 28.92,
7.84, 27.51, 27.07, 26.88, 26.59, 26.44, 25.27, 25.15, 24.73,
4.68, 24.65, 14.28, 14.27. ESI-MS (m/z) for C224H402N O
1688.62, obs. 1689.85; [M+6H] calc. 1407.35, obs. 1408.37.
5-((tert-Butoxycarbonyl)amino)pentyl 4-Methylben-
zenesulfulfonate (15). tert-Butyl (5-hydroxypentyl)-
carbamate (28.6 g, 0.14 mmol) was dissolved in DCM (200
mL), and TEA (29 mL, 0.21 mol) at 0 °C, then TsCl (32.2 g,
0.169 mol) and a crystal DMAP were added to the solution.
After overnight stirring at RT, the reaction mixture was washed
by brine, briefly dried over Na SO , and concentrated under
16
3+
49
+
(exact mass 4100.95): [M+H] calc. 4101.95; [M+3H] calc.
4
+
1367.99, obs. 1368.40; [M+4H] calc. 1026.24, obs. 1026.89.
4
Generation 4 (G ) Dendron (14). Extension of Linker.
Compound 13 (101 mg, 0.025 mmol) was treated with neat
TFA (1 mL) for 10 min at room temperature to remove the
BOC protecting group. TFA was then removed by vacuum, and
the residual dendron was lyophilized overnight. The dendron
was resuspended in 1 mL anhydrous DMF to which DIEA (66
uL, 49 mg, 0.38 mmol, 15 equiv) was added. Compound 9 (12
mg, 0.050 mmol, 2 equiv) was premixed with HATU (16 mg,
2
4
reduced pressure. Silica gel chromatography using hexane/ethyl
acetate gradient from 9/1 to 3/1 provided the desired tosylate
1
40 g (80%). H NMR (500 MHz, CDCl ): δ = 7.78 (d, J = 8.2
3
Hz, 2H), 7.35 (d, J = 8.2 Hz, 2H), 4.56 (bs, 1H), 4.03 (t, J = 6.4
Hz, 2H), 3.05 (m, 2H), 2.45 (s, 3H), 1.65 (m, 2H), 1.40 (s,
9H), 1.36 (m, 2H), 1.32 (m, 2H). 13C NMR (125 MHz,
0.043 mmol, 1.7 equiv) in 500 uL of DMF and 44 uL DIEA (32
mg, 0.25 mmol, 10 equiv) was then added to the dendron and
stirred at room temperature for 20 min. DCM (10 mL) was
then added, and the reaction solution was washed with water
CDCl ): δ = 155.96, 144.76, 133.07, 129.86, 127.87, 79.10,
3
70.37, 40.20, 29.41, 28.41, 22.65, 21.64. ESI-MS (m/z) for
+
C H NO S (exact mass: 357.46): [M+H] calc. 358, obs. 358.
17
27
5
(
1×), 0.1 N HCl (3×), and water (1×). The DCM layer was
tert-Butyl (5-Bromoxypentyl)carbamate (16). The
tosylate 15 (39 g, 0.109 mmol) was dissolved in acetonitrile
evaporated, then left to dry overnight under high vacuum,
resulting in an oil. To further extend the linker one more
round, the procedure above was reiterated in its entirety where
the dendron was treated with neat TFA (∼1 mL) for 10 min at
room temperature. TFA was removed in vacuo, and the
dendron was dissolved in water:acetonitrile (1:1), frozen, and
(100 mL), then NaBr (45 g, 0.437 mmol) and Bu NBr (1.4 g,
4
0.0043 mmol) were added. The resulting mixture was heated to
reflux for an overnight period. Solvents were then removed
under vacuum, and the residue was dissolved in DCM (400
mL) and washed by brine. Drying over Na SO , filtration,
2
4
2
092
dx.doi.org/10.1021/bc400333m | Bioconjugate Chem. 2013, 24, 2088−2103