PAPER
A Synthesis of 5’-Amino-3’,5’-dideoxyuridine
401
10 min. Triphenyltin hydride (7.90 g, 22.51 mmol) was added in a
single portion and the solution was heated at reflux temperature for
23 h. The solvent was removed under reduced pressure and the
crude material was purified by silica gel (250 g) column chromatog-
raphy (hexanes to 1:2 hexanes/EtOAc) to give 5.77 g (98%) of 5 as
a white foam; [a]D +9.7 (c = 1.3, CH2Cl2).
1H NMR (300 MHz, CDCl3): d = 0.13 (12 H, m), 0.92 (18 H, m),
1.69-1.76 (1 H, m), 2.01-2.09 (1 H, m), 3.72 (1 H, 1/2 ABq,
J = 12.1 Hz), 4.18 (1 H, 1/2 ABq, J = 12.0 Hz), 4.35 (1 H, d, J = 3.9
Hz), 4.47-4.53 (1 H, m), 5.62 (1 H, d, J = 8.1 Hz), 5.73 (1 H, s),
8.16 (1 H, d, J = 8.1 Hz), 8.50 (1 H, s, D2O exchangeable).
1H NMR (300 MHz, CDCl3): d = 0.08 (3 H, s), 0.12 (3 H, s), 0.88
(9 H, s), 1.69-2.01 (2 H, m), 3.55 (1 H, 1/2ABx, J = 3.9, 13.5 Hz),
3.82 (1 H, 1/2ABx, J = 3.3, 13.5 Hz), 4.39 (1 H, m), 4.55 (1 H, m),
5.70 (1 H, s), 5.74 (1 H, d, J = 8.1 Hz), 7.69 (1 H, d, J = 8.1 Hz),
8.62 (1 H, s, D2O exchangeable).
13C NMR (75 MHz, CDCl3): d = -5.2, -4.8, 14.4, 17.8, 25.6, 35.3,
53.0, 62.1, 78.7, 93.2, 101.7, 139.6, 150.1, 163.6.
IR (neat): n = 3211, 2102, 1713 cm-1.
HRMS (FAB): m/z calcd for C15H26N5O4Si (MH+): 368.1754.
Found: 368.1739.
13C NMR (75 MHz, CDCl3): d = -5.6, -5.5, -5.2, -4.7, 17.8, 18.4,
5'-Amino-2'-O-(tert-butyldimethylsilyl)-3',5’-dideoxyuridine
(8)
23.3, 32.7, 39.3, 62.7, 81.6, 92.3, 100.9, 136.3, 140.3, 150.1, 163.7.
IR (neat): n = 3171, 1682 cm-1.
HRMS (FAB): m/z calcd for C21H41N2O5Si2 (MH+): 457.2554.
The azidouridine 7 (0.30 g, 0.82 mmol) was combined with 10%
Pd/C in absolute EtOH and hydrogenated under 40 psi of H2 for 8
h. The mixture was concentrated to a clear oil under reduced pres-
sure. The product crystallized upon the addition of Et2O to afford
245 mg (88%) of 8; mp 89-91 °C (dec.); [a]D -26.3 (c = 0.3,
CH2Cl2).
1H NMR (300 MHz, CDCl3): d = 0.08 (3 H, s), 0.12 (3 H, d), 0.89
(9 H, s), 1.65 (2 H, s, D2O exchangeable), 1.80-1.87 (1 H, m),
2.06-2.16 (1 H, m), 3.75 (1 H, d, J = 12.0 Hz), 4.10 (1 H, d, J = 11.7
Hz), 4.48 (2 H, m), 5.63 (1 H, d, J = 0.9 Hz), 5.69 (1 H, d, J = 8.1
Hz), 7.87 (1 H, d, J = 8.1 Hz), 8.62 (1 H, s, D2O exchangeable).
13C NMR (75 MHz, CDCl3): d = -5.1, -4.7, 14.4, 17.9, 25.6, 35.7,
62.1, 93.4, 101.5, 140.0, 150.1, 156.7, 163.6.
IR (CH2Cl2): n = 3853, 3744, 3196, 1694 cm-1.
HRMS (FAB): m/z calcd for C15H28N3O4Si (MH+): 342.1849.
Found: 457.2561.
2’-O-(tert-Butyldimethylsilyl)-3’-deoxyuridine (6)
Compound 5 (2.01 g, 4.40 mmol) was dissolved in MeCN (220 mL)
and cooled to 0 ∞C with an ice/water bath. The mixture was treated
with a 5% solution of HF in MeCN (17.0 mL) and stirred at 0 ∞C for
30 min. The mixture was allowed to warm to r.t. and stirred for an-
other hour. The mixture was quenched with solid NaHCO3, filtered,
concentrated under reduced pressure and the residue was chromato-
graphed over silica gel (100 g) (15:1 CH2Cl2/MeOH) to yield 1.30
g (86%) of 6 as a white foam; mp 58-60 ∞C (dec.); [a]D -9.8
(c = 1.0, CH2Cl2).
1H NMR (300 MHz, CDCl3): d = 0.07 (3 H, s), 0.11 (3 H, s), 0.86
(9 H, s), 1.79 (1 H, ddd, J = 2.6, 5.9, 12.8 Hz), 2.02-2.11 (1 H, m),
2.82 (1 H, br s, D2O exchangeable), 3.71 (1 H, 1/2 ABx,
J = 2.6, 12.1 Hz), 4.07 (1 H, 1/2 ABx, J = 1.8, 12.1 Hz), 4.43-4.51
(2 H, m), 5.60 (1 H, d, J = 1.8 Hz), 5.67 (1 H, d, J = 8.1 Hz), 7.82
(1 H, d, J = 8.0 Hz), 9.36 (1 H, br s, D2O exchangeable).
Found: 342.1853.
5'-Amino-3',5’-dideoxyuridine (2)
The aminouridine 8 (8.4 mg, 0.025 mmol) was dissolved in anhyd
MeCN (1.0 mL) and treated with a solution of HF (5%) in MeCN
(1.0 mL). The mixture was stirred at r.t. for 1.5 h at which time the
starting material was consumed (TLC monitoring). The solvent was
removed under reduced pressure giving a white solid which was
triturated with cold EtOH to give 5.0 mg (90%) of 2 as a white solid;
[a]D +7.1 (c = 0.6, 1 N HCl).
13C NMR (75 MHz, CDCl3): d = -5.0, -4.7, 17.9, 25.7, 33.6, 62.6,
76.5, 81.2, 94.0, 101.3, 141.0, 150.1, 163.6.
IR (neat): n = 3399, 1684 cm-1.
HRMS (FAB): m/z calcd for C15H27N2O5Si (MH+):343.1689.
Found 343.1697.
1H NMR (300 MHz, D2O): d = 2.02-2.08 (1 H, m), 2.13-2.21 (1 H,
m), 3.21-3.29 (1 H, dd, J = 9.3, 13.6 Hz), 3.41 (1 H, dd,
J = 2.6, 13.6 Hz), 4.59-4.64 (2 H, m), 5.75 (1 H, d, J = 1.8 Hz),
5.84 (1 H, d, J = 8.1 Hz), 7.62 (1 H, d, J = 8.0 Hz).
13C NMR (75 MHz, D2O): d = 35.5, 42.7, 74.9, 76.7, 94.3, 101.7,
142.2, 151.4, 166.3.
Anal. Calcd for C15H26N2O5Si: C, 52.61; H, 7.65; N, 8.18. Found:
C, 52.73; H, 7.70, N; 8.23.
Preparation of Hydrazoic Acid Solution
A slurry of NaN3 (5.0 g, 0.08 mmol) in H2O (5 mL) was covered
with anhyd toluene (50 mL) and cooled to 0 °C while stirring under
N2. Conc. H2SO4 (2.2 mL, 0.04 mmol) was added dropwise over 10
min. Upon completion of the addition, the flask was placed in a
-78 °C bath and the toluene was decanted off and dried (MgSO4).
A small aliquot of the toluene solution was diluted with H2O and ti-
trated with aq 1 M NaOH solution using phenolphthalein indicator.
Typical concentrations of HN3 ranged from 0.6 to 1.5 M. These so-
lutions were generally used immediately, but could be stored at 0 °C
for several days if necessary.
HRMS (FAB): m/z calcd for C9H14N3O4 (MH+): 228.0984. Found:
228.0991.
Acknowledgement
This work was supported by the National Science Foundation and
the National Institutes of Health. Mass spectra were obtained on in-
struments supported by the National Institutes of Health Shared In-
strumentation Grant GM49631.
5’-Azido-2’-O-(tert-butyldimethylsilyl)-3',5’-dideoxyuridine
(7)18
2’-O-(tert-butyldimethylsilyl)-3’-deoxyuridine (6; 500 mg, 1.46
mmol) was dissolved in freshly distilled THF (10 mL) and stirred at
r.t. under Ar. Ph3P (422 mg, 1.61 mmol) was added followed by
HN3 (1.52 mL of a 1.06 M solution in toluene, 1.61 mmol) and
DEAD (254 mL, 1.61 mmol). The mixture was stirred at r.t. under
argon for 24 h. The solvent was removed and the residue was chro-
matographed over silica gel (20:1 CH2Cl2/MeOH) to yield 498 mg
(93%) of 7 as a colorless oil; [a]D -38.6 (c = 0.3, CH2Cl2).
References
(1) (a) Lin, T.-S.; Neenan, J.P.; Cheng, Y.-C.; Prusoff, W.H. J.
Med. Chem. 1975, 19, 495.
(b) Lin, T.-S.; Chai, C.; Prusoff, W.H. J. Med. Chem. 1976,
19, 915.
(c) Schinazi, R.F.; Chen, M.S.; Prusoff, W.H. J. Med. Chem.
1979, 22, 1273.
Synthesis 2000, No. 3, 399–402 ISSN 0039-7881 © Thieme Stuttgart · New York