Journal of Medicinal Chemistry
Drug Annotation
2
.53 (m, 1H), 2.47−2.27 (m, 1H), 2.06−1.93 (m, 1H); MS (ESI) m/
NMR (400 MHz, DMSO-d ) δ 11.00 (s, 1H), 9.67 (t, J = 6.25 Hz,
6
+
z 378.15 [M + 1] .
1H), 7.67 (d, J = 7.81 Hz, 1H), 7.50−7.62 (m, 5H), 7.34- 7.42 (m,
2H), 5.11 (dd, J = 5.08, 13.28 Hz, 1H), 4.38−4.47 (m, 3H), 4.24−
4.31 (m,1H), 2.86−2.97 (m, 1H), 2.55−2.64 (m, 1H), 2.32−2.45 (m,
1H), 1.99 (dtd, J = 2.34, 5.25, 12.55 Hz, 1H). MS (ESI) m/z 428.14
N-((2-(2,6-Dioxopiperidin-3-yl)-1-oxoisoindolin-5-yl) meth-
yl)-2-oxo-2-phenylacetamide (7). Step A. To a stirred solution
of 2-(2,6-dioxopiperidin-3-yl)-1-oxoisoindoline-5-carbonitrile (10 g,
+
3
7.13 mmol) in dimethylacetamide (320 mL) were added
[M+l] .
methanesulfonic acid (2.6 mL, 40.85 mmol) and 10% dry palladium
2-(4-Chlorophenyl)-N-((2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindo-
lin-5-yl)methyl)-2,2-difluoroacetamide (16). To 3-(5-(aminometh-
yl)-1 -oxoisoindolin-2- yl)piperidine-2,6-dione methanesulfonate 13
(15.0 g, 40.6 mmol) in Ν,Ν-dimethylformamide (100 mL) was added
1-[bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]-
pyridinium 3-oxid hexafluorophosphate (16.9 g, 44.7 mmol) and 2-(4-
chlorophenyl)-2,2-difluoroacetic acid (8.4 g, 40.6 mmol) followed by
diisopropylethylamine (21.3 mL, 122 mmol). The mixture was
allowed to stir at 25 °C for 24 h and then partitioned between 1500
mL of water and 1500 mL of EtOAc. The organic layer was washed
with saturated sodium bicarbonate solution (2 × 500 mL), 1 N HCl
solution (2 × 500 mL), and then brine (2 × 300 mL). The organic
layer was then concentrated under reduced pressure to afford a white
solid which was slurried in water for 30 min and collected by vacuum
filtration. The solids were digested with isopropanol and refluxed for 1
h. After cooling to room temperature, the solids were collected by
vacuum filtration to afford 2-(4-chlorophenyl)-N-((2-(2,6-dioxopiper-
idin-3-yl)-loxoisoindolin-5-yl)methyl)-2,2-difluoroacetamide (16.1 g,
on carbon (4 g) and stirred at hydrogen pressure under 50 psi at 40
°
C for 20 h in a hydrogen vessel. The reaction mixture was filtered
through Celite and washed with water (100 mL). The filtrate was
concentrated under reduced pressure, and the resultant residue was
triturated with 1% methanol in dichloromethane to give 3-(5-
(
aminomethyl)-1-oxoisoindolin-2-yl)piperidine-2,6-dione methane-
sulfonate (5.6 g, 15.17 mmol, 40% yield) as an off-white solid. MS
+
(ESI) m/z 272.0 [M − 1] .
Step B. To a stirred cold (0 °C) solution of 3-(5-(aminomethyl)-1-
oxoisoindolin-2-yl)piperidine-2,6-dione methanesulfonate (300 mg,
0
.813 mmol) in N,N-dimethylacetamide (10 mL) was added 2-oxo-2-
phenylacetic acid (122 mg, 0.813 mmol) followed by N,N-
diisopropylethylamine (0.5 mL, 2.43 mmol) and 1-[bis-
(
dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium 3-
oxid hexafluorophosphate (402 mg, 1.056 mmol) and stirred at
room temperature for 16 h. The reaction mixture was diluted with
water (100 mL), the solid obtained was filtered, washed with diethyl
ether (20 mL), dried and purified by column chromatography (100−
1
34.8 mmol, 85.7% yield, HPLC purity >99%) as a white solid. H
2
00 silica) using 3% methanol in dichloromethane as eluent to give
NMR (500 MHz, DMSO-d6) δ ppm 10.98 (s, 1H), 9.68 (t, J = 6.15
Hz, 1H), 7.69 (d, J = 7.88 Hz, 1H), 7.58−7.66 (m, 4H), 7.33−7.44
(m, 2H), 5.11 (dd, J = 13.24, 5.04 Hz, 1H), 4.39−4.50 (m, 3H),
4.24−4.35 (m, 1H), 2.85−2.98 (m, 1H), 2.61 (dd, J = 15.29, 2.05 Hz,
1H), 2.39 (dd, J = 12.93, 4.73 Hz, 1H), 1.95−2.07 (m, 1H). MS
(55 mg, 0.135 mmol, 17% yield, HPLC purity >97%) as an off white
1
solid. H NMR (400 MHz, DMSO-d ) δ (ppm) 10.98 (s, 1H), 9.56
6
(
d, J = 6.2 Hz, 1H), 8.08−7.86 (m, 2H), 7.80−7.66 (m, 2H), 7.63−
7
1
1
1
.55 (m, 3H), 7.49 (d, J = 7.8 Hz, 1H), 5.12 (dd, J = 13.3, 5.1 Hz,
H), 4.58 (d, J = 6.0 Hz, 2H), 4.48 (d, J = 17.4 Hz, 1H), 4.33 (d, J =
7.3 Hz, 1H), 2.99−2.83 (m, 1H), 2.73 (s, 1H), 2.63 (s, 1H), 2.27 (s,
+
(ESI) m/z 462.2 [M+l] .
ePL Degradation Assay. DF15 multiple myeloma cells stably
expressing ePL-tagged GSPT1 were generated via lentiviral infection
with pLOC-ePL-GSPT1. Cells were dispensed into a 384-well plate
(Corning #3712) prespotted with compound. Compounds were
dispensed by an acoustic dispenser (ATS Acoustic Transfer System
from EDC Biosystems) into a 384-well in a 10 pt dose response curve
using 3-fold dilutions starting at 10 μM and going down to 0.0005 μM
in DMSO. A DMSO control is added to the assay. Twenty-five
microliters of media (RPMI-1640 + 10% Heat Inactivated FBS + 25
mM Hepes+1 mM Na Pyruvate + 1× NEAA + 0.1% Pluronic F-68 +
1× Pen Strep Glutamine) containing 5000 cells was dispensed per
+
H); MS (ESI) m/z 406.14 [M + 1] .
N-((2-(2,6-Dioxopiperidin-3-yl)-1-oxoisoindolin-5-yl)-
methyl)-2-methyl-2-phenylpropanamide (8). To a cooled (0
°
C) solution of 3-(5-(aminomethyl)-1-oxoisoindolin-2-yl)piperidine-
2
,6-dione hydrochloride (200 mg, 0.65 mmol) in N,N-dimethylace-
tamide (4 mL) were added 2-methyl-2-phenylpropanoic acid (106
mg, 0.65 mmol) and 1-[bis(dimethylamino)methylene]-1H-1,2,3-
triazolo[4,5-b]pyridinium 3-oxid hexafluorophosphate (369 mg, 0.97
mmol) followed by diisopropylethylamine (0.34 mL, 1.94 mmol) and
stirred at room temperature for 16 h. The volatiles were removed
under reduced pressure, and the resultant residue was poured into
water (10 mL). The precipitated solid was filtered and purified by
Reveleris C-18 reversed phase column chromatography (55−60%
acetonitrile/0.1% aqueous formic acid) to afford N-((2-(2,6-
dioxopiperidin-3-yl)-1-oxoisoindolin-5-yl)methyl)-2-methyl-2-phenyl-
well. Assay plates were incubated at 37 °C with 5% CO for 4 h. After
2
incubation, 25 μL of the InCELL Hunter Detection Reagent Working
Solution (DiscoverX, cat #96-0002, Fremont, CA) was added to each
well and incubated at room temperature for 30 min protected from
light. After 30 min, luminescence was read on a PHERAstar
luminometer (Cary, NC).
propanamide (105 mg, 0.25 mmol, 39% yield, HPLC purity >99%) as
an off-white solid. H NMR (400 MHz, DMSO-d ) δ 10.98 (s, 1H),
1
To determine EC50 values for GSPT1 degradation, a four-
parameter logistic model (sigmoidal dose−response model) (FIT=
6
8
5
5
2
.02 (t, J = 6.0 Hz, 1H), 7.61 (d, J = 8.0 Hz, 1H), 7.33−7.21 (m, 7H),
.10 (dd, J = 14.0, 5.6 Hz, 1H), 4.48 (d, J = 16.8 Hz, 1H), 4.33 (d, J =
.6 Hz, 2H), 4.24 (d, J = 17.2 Hz, 1H), 2.96−2.87 (m, 1H), 2.62−
̂
(A + ((B − A)/1 + ((C/x)D))), where C is the inflection point
(EC50), D is the correlation coefficient, and A and B are the low and
high limits of the fit, respectively) was used to determine the
compound’s EC50 value, which is the half-maximum effective
concentration. The minimum Y is reference to the Y constant. In
the GSPT1 degradation assay, we used compound 3 as the control
with a Y constant = 0. The maximum limit is the Y max DMSO
control. All percent of control GSPT1 degradation curves were
processed and evaluated using Activity Base (IDBS). The maximum
limit is the Y max DMSO control. All percent of control GSPT1
degradation curves were processed and evaluated using Activity Base
(IDBS).
.58 (m, 1H), 2.44−2.39 (m, 1H), 2.38−1.97 (m, 1H), 1.49 (s, 6H);
+
MS (ESI) m/z 420.19 [M + 1] .
N-((2-(2,6-Dioxopiperidin-3-yl)- l-oxoisoindolin-5-yl)-
methyl)-2,2-. Difluoro-2-phenylacetamide (9). 3-(5-(Aminometh-
yl)-1 -oxoisoindolin-2-yl)piperidine-2,6-dione, mesylic acid (0.050 g,
0
.135 mmol), was placed in a vial with Ν,Ν-dimethylformamide (1.0
mL), 2,2-difluoro-2-phenylacetic acid (0.023 g, 0.135 mmol),
diisopropylethylamine (0.071 mL, 0.406 mmol), and 1-[bis-
(
dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium 3-
oxide hexafluorophosphate (0.057 g, 0.149 mmol). The reaction
mixture was stirred at room temperature for 18 h. The reaction
mixture was taken up in dimethyl sulfoxide and purified using reverse-
phase semi preparatory HPLC (5−100% acetonitrile + 0.1% formic
acid in water + 0.1% formic acid over 20 min). Fractions containing
desired product were combined, and volatile organics were removed
under reduced pressure to give N-((2-(2,6-dioxopiperidin-3-yl)-l-
Cell Culture. Acute myeloid leukemia cell lines KG-1, Kasumi-1,
U937, MOLM-13, HL-60, and MV-4-11 were purchased from
American Tissue Culture Collection (ATCC). NB-4, HNT-34,
OCI-AML2, and OCI-AML3 cell lines were purchased from Deutsche
Sammlung von Mikroorganismen and Zellkulturen GmbH. 293FT
CRBN−/−, MOLM-13 CRBN−/−, and OCI-AML2 CRBN−/− cell
lines were described previously. KG-1, Kasumi-1, U937, MOLM-13,
NB-4, and HNT-34 cell lines were maintained in Roswell Park
oxoisoindolin-5-yl)methyl)-2,2-difluoro-2-phenylacetamide (0.039 g,
1
0.091 mmol, 67.4% yield, HPLC purity >99%) as a white solid. H
1
841
J. Med. Chem. 2021, 64, 1835−1843