Polyanion Inhibitors of HIV and Other Viruses. 5
J ournal of Medicinal Chemistry, 1997, Vol. 40, No. 3 347
acrylate), 175 (CdO, ester); MS (FAB+, NOBA) m/ z 284 [M +
H]+, 252 [M - MeOH]+, 228. Anal. (C16H29NO3) C, H, N.
Meth yl 11-(N-Acr yloyl-N-eth yla m in o)u n d eca n oa te (3).
According to the procedure described for the synthesis of 2,
methyl 11-(N-ethylamino)undecanoate (5.5 g, 22.6 mM, 1
equiv), DMAP (70 mg), 100 mL of CH2Cl2, and acryloyl chloride
(6 mL, 29.3 mM, 2.2 equiv) were used; 5.8 g of a yellow oil
was isolated for the ester 3: yield 89%; Rf 0.69 (CHCl3/EtOH,
95/5, v/v); IR (CHCl3, ν, cm-1) 2931-2856 (C-H), 1729 (CdO,
(C3, C10), 27.5 (C4, C9), 29 (C5-C8), 30 (C2′′, C3′′), 36 (C2), 41
and 42 (C1′), 46 and 47 (C11), 52 (2 CH3, esters), 126 and 127
(Ca, Cb), 166 (CdO, acrylate), 170 (CdO, amino acid), 173 and
174 (CdO, esters); MS (FAB+, NOBA) m/ z 441 [M + H]+, 266,
225, 176, 112. Anal. (C23H40N2O6), C, H, N.
Met h yl N-(11-(N′-(ter t-Bu t yloxyca r b on yl)a m in o)u n -
d eca n oyl)a m in o Acid Ester s 7-9. 11-(N-(ter t-Bu tyloxy-
ca r bon yl)a m in o)u n d eca n oic Acid . To a solution of tri-
ethylamine (0.9 mL, 6.55 mM, 1.5 equiv) of Boc-ON (1.18 g,
4.8 mM, 1.1 equiv) in 16 mL of a H2O/dioxane (50/50) mixture
was added 11-aminoundecanoic acid (1 g, 4.37 mM, 1 equiv).
Magnetic stirring was maintained for 3 h at room temperature;
then 20 mL of H2O and 25 mL of AcOEt were added. The
aqueous phase was acidified by adding aqueous 5% citric acid
till precipitation. After extraction with ethyl acetate, the
organic phase was concentrated under reduced pressure. After
recrystallization (hexane), 1.04 g of acid was obtained as a
white powder (yield 80%, mp 77-78 °C (lit.19 mp 79 °C), Rf
0.68 (AcOEt)).
1
ester), 1644 (CdO, amide), 1250-1170 (C-O); H NMR (250
MHz, CDCl3) δ 1.1 (m, 3H, H2′), 1.2-1.4 (m, 12H, H4-H9), 1.5-
1.6 (m, 4H, H3, H10), 2.3 (t, 2H, H2), 3.4 (m, 4H, H11, H1′), 3.7
(s, 3H, CO2Me), 5.7 (dd, 1H, Hb), 6.3 (dd, 1H, Hc), 6.6 (dd, 1H,
Ha) (J ac ) 16.7 Hz, J ab ) 8 Hz, J bc ) 2.3 Hz); 13C NMR (50.32
MHz, CDCl3) δ 13.5 and 15 (C2′), 25 (C3, C10), 27 (C4, C9), 30
(C5-C8), 34 (C2), 41 and 42.5 (C1′), 46 and 47.5 (C11), 51 (CH3,
ester), 126 (Cb), 131 (Ca), 166 (CdO, acrylate), 175 (CdO,
ester); MS (FAB+, GT) m/ z 298 [M + H]+, 406 [M + H + GT]+,
595 [2M + H]+, 242. Anal. (C17H31NO3) C, H, N.
Gen er a l Meth od . To a solution of methyl amino ester
hydrochloride (10 mM) in 40 mL of anhydrous THF at 0 °C
was successively added N-ethylmorpholine (10 mM) followed
by 11-(N-(tert-butyloxycarbonyl)amino)undecanoic acid (10
mM), HOBt (10 mM), and dicyclohexylcarbodiimide (10 mM).
The mixture was magnetically stirred for 1 h at 0 °C and then
for 18 h at room temperature. The solvent was eliminated
under reduced pressure and substituted by 50 mL of AcOEt.
The DCU was eliminated by filtration on Celite, and the
organic phase was successively washed twice with 25 mL of
saturated aqueous NaHCO3, twice with 25 mL of aqueous 10%
citric acid solution, and finally twice with 25 mL of H2O. The
compound was purified by chromatography under reduced
pressure (CH2Cl2).
Meth ylN-(11-(N ′-Acr yloyl-N′-eth yla m in o)u n d eca n oyl)-
a m in o Acid Ester . Gen er a l Meth od . To a suspension of
methyl amino ester hydrochloride (10 mM) in 50 mL of CH2-
Cl2 at 0 °C were successively added N-ethylmorpholine (1.27
mL, 10 mM, 1 equiv), hydroxybenzotriazole (1.35 g, 10 mM, 1
equiv), and 11-(N-acryloyl-N-ethylamino)undecanoic acid (2.84
g, 10 mM, 1 equiv) obtained by saponification under sonication
of the monomer 3. Then dicyclohexylcarbodiimide (2.06 g, 10
mM, 1 equiv) was fractionally added with a catalytic amount
of DMAP (100 mg). Magnetic stirring was maintained for 2 h
at 0 °C and then for 6 h at room temperature. The DCU
precipitate was eliminated by filtration on Celite, and the
volume of the reaction medium was diluted with 50 mL of CH2-
Cl2. The organic phase was successively washed twice with
50 mL of aqueous 1 N HCl, twice with 50 mL of saturated
aqueous NaHCO3, and finally twice with 50 mL of H2O. After
elimination of CH2Cl2 under reduced pressure, the residue was
purified by silica gel column chromatography (CH2Cl2/EtOH,
95/5, v/v).
Met h yl N-(11-(N′-(ter t-b u t yloxyca r b on yl)a m in o)u n -
d eca n oyl)glycin a te (7): yield 55%; mp 74-75 °C; Rf 0.56
(CHCl3/EtOH, 95/5, v/v); IR (KBr, ν, cm-1) 3264 (N-H), 2922-
2848 (C-H), 1761-1679 (CdO), 1521 (N-H, δ), 1415-1370
1
(C-H, tBu); H NMR (250 MHz, CDCl3) δ 1.2 (m, 12H, H4-
H9), 1.4 (m, 9H, tBu), 1.5 (m, 4H, H10, H3), 2.15 (t, 2H, H2), 3.0
(m, 2H, H11), 3.5 (s, 3H, CO2Me), 4.0 (d, 2H, H2′′), 4.4 (m, 1H,
NH′), 5.9 (m, 1H, NH); 13C NMR (50.32 MHz, CDCl3) δ 25 and
25.5 (C3, C10), 26.5 (C4, C9), 28.5-30.5 (C5-C8), 30 (tBu), 34.5
(C2), 36 (C2′′), 41 (C11), 52.5 (CH3, ester), 80 (C2′), 171 (CdO,
ester), 174 (CdO, amino acid); MS (FAB+, NOBA) m/ z 373
[M + H]+, 273, 90, 57 [tBu]+. Anal. (C19H36N2O5) C, H, N.
Met h yl N-(11-(N′-(ter t-b u t yloxyca r b on yl)a m in o)u n -
d eca n oyl)-â-a la n in a te (8): yield 50%; mp 62-63 °C; Rf 0.58
(CHCl3/EtOH, 95/5, v/v); IR (KBr, ν, cm-1) 3333 (N-H), 2921-
2855 (C-H), 1741-1678-1645 (CdO), 1420-1365 (C-H, tBu);
1H NMR (250 MHz, CDCl3) δ 1.2 (m, 12H, H4-H9), 1.4 (m,
9H, tBu), 1.5-1.6 (m, 4H, H10, H3), 2.1 (t, 2H, H2), 2.4 (t, 2H,
H2′′), 3.0 (m, 2H, H11), 3.6 (s, 3H, CO2Me), 3.45 (m, 2H, H3′′),
4.6 (m, 1H, NH′), 6.1 (m, 1H, NH); MS (FAB+, NOBA) m/ z
387 [M + H]+, 410 [M + Na + H]+, 287, 57 [tBu]+. Anal.
(C20H38N2O5), C, H, N.
Meth yl N-(11-(N′-a cr yloyl-N′-eth yla m in o)u n d eca n oyl)-
glycin a te (4): yield 57%; mp 29-30 °C; Rf 0.88 (CHCl3/EtOH,
8/2, v/v); IR (KBr, ν, cm-1) 3300 (N-H), 2922-2848 (Csp3-
H), 1742 (CdO), 1648 (CdC), 1557 (N-H); 1H NMR (250 MHz,
CDCl3) δ 1.1 (m, 3H, H2′), 1.15-1.3 (m, 12H, H4-H9), 1.5-1.7
(m, 4H, H3, H10), 2.2 (t, 2H, H2), 3.1-3.4 (m, 4H, H11, H1′), 3.65
(s, 3H, CO2Me), 3.9 (d, 2H, H2′′), 5.6 (dd, 1H, Hb) 6.3 (dd, 1H,
Hc), 6.45 (m, 1H, NH), 6.5 (dd, 1H, Ha); 13C NMR (50.32 MHz,
CDCl3) δ 13 and 14.5 (C2′), 25 (C3, C10), 27 (C4, C9), 30 (C5-
C8), 34.5 (C2), 36 (C2′′), 42 and 43 (C1′), 46 and 47 (C11), 51.5
(CH3, ester), 128 (Ca and Cb), 166 (CdO, acrylate), 170 (CdO,
ester), 174 (CdO, amino acid); MS (FAB+, GT) m/ z 355 [M +
H]+, 463 [M + GT + H]+, 210, 112. Anal. (C19H34N2O4) C, H,
N.
Meth yl N-(11-(N′-a cr yloyl-N′-eth yla m in o)u n d eca n oyl)-
â-a la n in a te (5): yield 52%; Rf 0.85 (CHCl3/EtOH, 8/2, v/v);
IR (CHCl3, ν, cm-1) 3303 (N-H), 2925-2851 (C-H), 1741
(CdO), 1641 (CdC), 1544 (N-H); 1H NMR (250 MHz, CDCl3)
δ 1.1 (m, 3H, H2′), 1.15-1.3 (m, 12H, H4-H9), 1.4-1.65 (m,
4H, H3, H10), 2.1 (t, 2H, H2), 2.6 (t, 2H, H2′′), 3.2-3.4 (m, 4H,
H1′, H11), 3.45 (m, 2H, H3′′), 3.6 (s, 3H, CO2Me), 5.6 (dd, 1H,
Hc), 6.1 (dd, 1H, NH), 6.2 (dd, 1H, Hb), 6.4 (dd, 1H, Ha); 13C
NMR (50.32 MHz, CDCl3) δ 12.5-14.5 (C2′), 25 (C3, C10), 26
(C4, C9), 30 (C5-C8), 34 (C3′′), 35 (C2), 36.5 (C2′′), 41 and 42 (C1′),
46 and 47 (C11), 51 (CO2Me), 126 and 127 (Ca, Cb), 166 (CdO,
acrylate), 170 (CdO, amino acid), 174 (CdO, ester); MS (FAB+,
GT) m/ z 369 [M + H]+, 477 [M + H + GT]+, 845 [2M + H +
GT]+. Anal. (C20H36N2O4) C, H, N.
Met h yl N-(11-(N′-(ter t-b u t yloxyca r b on yl)a m in o)u n -
d eca n oyl)-L-glu ta m a te (9): yield 54.5%; mp 64-65 °C; Rf
0.61 (CHCl3/EtOH, 95/5, v/v); 1H NMR (250 MHz, CDCl3) δ
1.1 (m, 12H, H4-H9), 1.4 (m, 9H, tBu), 1.6 (m, 4H, H10, H3),
1.9 (m, 2H, H3′′), 2.1 (t, 2H, H2), 2.4 (m, 2H, H2′′), 3.0 (m, 2H,
H11
), 3.6 and 3.7 (2s, 6H, 2CO2Me), 4.5 (m, 1H, H4′′), 4.6 (m,
1H, NH), 6.1 (m, 1H, NH); MS (FAB
+, NOBA) m/ z 459 [M +
H]+, 449, 302, 202. Anal. (C23H42N2O7) C, H, N.
Met h yl N-(11-(N′-Acr yloyla m in o)u n d eca n oyl)a m in o
Acid Ester s 10-12. Gen er a l Meth od . The preceding Boc-
amino esters (5 mM) were dissolved in 15 mL of a mixture
composed of trifluoroacetic acid and CH2Cl2 (1/1, v/v). After
stirring for 1 h at room temperature, the reaction mixture was
evaporated under reduced pressure. The residue was tritu-
rated several times with anhydrous ether; the trifluoroacetate
salts of the corresponding methyl N-(11-(N′-acryloylamino)-
undecanoyl)amino esters were isolated as a white powder in
a roughly quantitative yield.
Meth yl N-(11-(N′-a cr yloyl-N′-eth yla m in o)u n d eca n oyl)-
L-glu ta m a te (6): yield 49%; Rf 0.80 (CHCl3/EtOH, 8/2, v/v);
IR (CH3Cl, ν, cm-1) 3428 (N-H), 2931-2856 (C-H), 1736
1
(CdO, ester), 1663-1630 (CdO, amide); H NMR (250 MHz,
CDCl3) δ 1.1 (m, 3H, H2′), 1.15-1.3 (m, 12H, H4-H9), 1.4-1.6
(m, 4H, H3, H10), 2.0 (m, 2H, H3′′), 2.2 (t, 2H, H2), 2.4 (m, 2H,
H2′′), 3.2-3.5 (m, 4H, H1′, H11), 3.7 and 3.75 (2s, 6H, 2CO2Me),
4.6 (m, 1H, H4′′), 5.6 (dd, 1H, Hb), 6.4 (m, 1H, NH), 6.45 (dd,
In 50 mL of CH2Cl2 at 0 °C were added the trifluoroacetate
of methyl N-(11-aminoundecanoyl)amino ester (2 mM, 1 equiv),
triethylamine (0.61 mL, 4.4 mM, 2.2 equiv), and a catalytic
1H, Hc), 6.5 (dd, 1H, Ha) (J ac ) 16.7 Hz, J ab ) 12.5 Hz, J bc
)
2.28 Hz); 13C NMR (50.32 MHz, CDCl3) δ 12.5-14.5 (C2′), 26