4
M. Donnard et al. / C. R. Chimie xxx (2017) 1e5
(s), doublet (d), triplet (t), quartet (q), broad singlet (br s),
combinations of those, or multiplet (m). Coupling con-
stants values J are given in Hz. Carbon chemical shifts are
4.1.3. 5-Chloro-2-pent-4-ynyl-pyrimidine (3c)
To a mixture of hex-5-ynamidine hydrochloride 6 (1 g,
5.3 mmol) and (Z)-N-(2-chloro-3-(dimethylamino)allyli-
dene)-N-methylmethanaminium hexafluorophosphate 7
(1.1 g, 3.6 mmol) in methanol (30 mL) was added sodium
methoxide (0.49 g, 9 mmol) and the solution was subse-
quently refluxed for 2 h. Then, it was cooled down to
room temperature and the reaction mixture was
concentrated under vacuum. The residue was then dis-
solved in DCM (20 mL) and washed with brine (10 mL).
The organic layer was dried over MgSO4, filtrated,
concentrated, and finally purified by silica gel flash
chromatography (cyclohexane/EtOAC 8:2) to give the
desired alkyne 3c in 74% yield (482 mg, 2.7 mmol). 1H
NMR (300 MHz, CDCl3): 8.62 (s, 2H), 3.08 (t, J ¼ 8.1 Hz,
2H), 2.37 (td, J ¼ 8.1 Hz, 3.5 Hz, 2H), 2.05 (m, 2H), 1.98 (t,
J ¼ 3.5 Hz, 1H). These data are in accordance with the
values reported in the literature.
reported in ppm (
d), relatively to the internal standard
(CDCl3, 77.23 ppm). High-resolution mass spectral
d
analysis (HRMS) was performed using an Agilent 1200
RRLC high pressure liquid chromatography (HPLC) chain
coupled with an Agilent 6520 Accurate mass quadrupole
time of flight (QToF).
4.1.1. Negishi coupling reaction leading to 2-alkylated
pyrimidines 3a and 3b
A mixture of ZneCu couple (230 mg) and 5-iodo-1-
trimethylsilylpent-1-yne 1 (500 mg, 1.9 mmol) in ben-
zene/DMA (15:1, 4 mL) was stirred at 80 ꢀC for 4 h. Sub-
sequently, to this solution, Pd(PPh3)2Cl2 (74 mg, 0.01 mmol)
and 2-iodopyrimidine 2a or 2b (0.75 mmol) were added,
and the reaction was let to stir at the same temperature for
48 h. The reaction mixture was cooled down to room
temperature, washed with water (5 mL), and dried over
MgSO4. The organic layers were filtered, concentrated, and
purified by silica gel flash chromatography (DCM/EtOAc
9:1) to give the targeted product 3.
4.1.4. Synthesis of alkynyl copper 4aec
Under Argon, to a suspension of CuI (518 mg, 2.7 mmol)
in DMF (68 mL) was added a solution of alkyne 3
(2.7 mmol) in DMF (5 mL) followed by potassium carbonate
(166 mg, 1.2 mmol). The reaction was let to stir at room
temperature for 3 h and the yellow precipitate formed
during the reaction was collected by filtration and succes-
sively washed with ammonium hydroxide (10% NH4OH
solution, 2 ꢂ 8 mL), water (2 ꢂ 8 mL), absolute ethanol
(2 ꢂ 8 mL), and finally diethyl ether (2 ꢂ 8 mL). The yellow
solid was then dried under vacuum overnight to afford the
desired alkynyl copper 4.
4.1.1.1. 2-(5-(Trimethylsilyl)pent-4-yn-1-yl)pyrimidine
(3a). Yield 80% (131 mg, 0.6 mmol). 1H NMR (300 MHz,
CDCl3): 8.69 (d, J ¼ 4.9 Hz, 2H), 7.15 (t, J ¼ 4.9 Hz, 1H),
3.09 (t, J ¼ 7.6 Hz, 2H), 2.37 (t, J ¼ 7.6 Hz, 2H), 2.08 (tt,
J ¼ J0 ¼ 7.6 Hz, 2H), 0,15 (s, 9H); 13C NMR (100 MHz,
CDCl3): 171.0, 157.3 (2C), 118.8, 106.9, 85.2, 38.6, 27.4, 19.9,
0.4 (3C).
4.1.4.1. (5-(Pyrimidin-2-yl)pent-1-yn-1-yl)copper
(4a). 479 mg, 2.3 mmol, 85%.
4.1.1.2. 5-Bromo-2-(5-(trimethylsilyl)pent-4-yn-1-yl)pyrimi-
dine (3b). Yield 73% (163 mg, 0.55 mmol). 1H NMR
(300 MHz, CDCl3): 8.43 (s, 2H), 2.76 (t, J ¼ 7.2 Hz, 2H), 2.09
(t, J ¼ 6.9 Hz, 2H), 1.77 (tt, J ¼ 7.2 Hz, 6.9 Hz, 2H), ꢁ0.136 (s,
9H); 13C NMR (100 MHz, CDCl3): 169.0, 157.8 (2C), 118.0,
106.6, 85.3, 37.8, 27.2, 19.7, 0.3 (3C).
4.1.4.2. (5-(5-Bromopyrimidin-2-yl)pent-1-yn-1-yl)copper
(4b). 645 mg, 2.2 mmol, 83%.
4.1.4.3. (5-(5-Chloropyrimidin-2-yl)pent-1-yn-1-yl)copper
(4c). 657 mg, 2.7 mmol, quantitative.
4.1.2. Deprotection of silylalkynes 2a and 2b
To a solution of the pyrimidine 2a or 2b (0.6 mmol) in
methanol (2 mL) was added potassium carbonate (5 mg,
0.04 mmol) in one portion and the mixture was then let to
stir for 2 h at room temperature. The reaction mixture was
then concentrated under vacuum, and the residue was
dissolved in ethyl acetate (5 mL), washed with brine (5 mL),
and dried over MgSO4. After filtration and concentration,
the corresponding terminal alkyne was directly used in the
next step without further purification.
4.1.5. General procedure for the synthesis of ynamides 5aec
To a solution of oxazolidinone (176 mg, 2 mmol) and the
alkynyl copper reagent 4 (0.5 mmol) in acetonitrile (1 mL)
was added N,N,N0,N0-tetramethylethylenediamine (76
mL,
0.5 mmol) and the resulting reaction mixture was vigor-
ously stirred at room temperature and under an atmo-
sphere of oxygen for 18 h. After complete disappearance of
the yellow suspension (to become a homogenous deep blue
solution), the crude reaction mixture was concentrated
under vacuum and purified by flash chromatography over
silica gel (cyclohexane/EtOAC 6:4) to afford the targeted
ynamide 5.
4.1.2.1. Alkyne from 3a. 1H NMR (400 MHz, CDCl3): 8.67 (d,
J ¼ 4.8 Hz, 2H), 7.10 (t, J ¼ 4.8 Hz, 1H), 3.06 (t, J ¼ 7.7 Hz, 2H),
2.37 (td, J ¼ 7.7 Hz, 3.5 Hz, 2H), 2.10 (m, 2H), 1.97 (t,
J ¼ 3.5 Hz, 1H).
4.1.5.1. 3-(5-(Pyrimidin-2-yl)pent-1-yn-1-yl)oxazolidin-2-one
(5a). Yield 81% (95 mg, 0.41 mmol). 1H NMR (300 MHz,
CDCl3): 8.66 (d, J ¼ 5.1 Hz, 2H), 7.13 (t, J ¼ 5.1 Hz,1H), 4.40 (t,
J ¼ 8.1 Hz, 2H), 3.87 (t, J ¼ 8.1 Hz, 2H), 3.07 (t, J ¼ 7.4 Hz, 2H),
2.43 (t, J ¼ 7.4 Hz, 2H), 2.07 (tt, J ¼ J0 ¼ 7.4 Hz, 2H); 13C NMR
4.1.2.2. Alkyne from 3b. 1H NMR (300 MHz, CDCl3): 8.66 (s,
2H), 3.01 (t, J ¼ 7.8 Hz, 2H), 2.25 (td, J ¼ 6.9 Hz, 2.7 Hz, 2H),
2.01 (m, 2H), 1.95 (t, J ¼ 2.7 Hz, 1H).
Please cite this article in press as: M. Donnard, et al., Intramolecular inverse electron-demand [4þ2] cycloadditions of ynamidyl-
10.1016/j.crci.2017.01.007