2
972
G. Ni et al. / Bioorg. Med. Chem. 22 (2014) 2966–2973
J = 11.4, 5.8 Hz, 1H), 2.57 (br s, 1H), 2.35 (t, J = 7.6 Hz, 2H), 2.14 (br
s, 1H), 2.01 (dd, J = 14.3, 8.5 Hz, 4H), 1.66–1.60 (m, 2H), 1.40–1.23
25.05, 22.84, 18.21, 14.26, ꢀ4.50, ꢀ4.68; HRMS (EI+) calcd for C25
+
52
H O
4
Si [M] 444.3635, found 444.3633.
(
m, 20H), 0.88 (t, J = 6.7 Hz, 3H).
4
.1.9.5. 2-O-tert-Butyldimethylsilanyl-1-O-cis-octadec-9-enoyl-
1
4
1
.1.9. General procedure for the synthesis of compounds 15a–
5e
To a solution of diol (14a–14e, 1 equiv) in DMF and THF, was
sn-glycerol (15e).
3
71% yield; H NMR (400 MHz, CDCl ) d
5.48–5.18 (m, 2H), 4.16–4.02 (m, 2H), 3.99–3.86 (m, 1H), 3.68–
3.48 (m, 2H), 2.31 (t, J = 7.6 Hz, 2H), 2.10–1.82 (m, 4H), 1.67–1.58
(m, 2H), 1.38–1.23 (m, 20H), 0.95–0.83 (m, 12H), 0.11 (d,
added imidazole (10 equiv) and DMAP (0.2 equiv), followed by
tert-butyldimethylsilyl chloride (3 equiv). The resulting reaction
mixture was stirred overnight. The reaction mixture was diluted
1
3
J = 1.9 Hz, 6H);
3
C NMR (100 MHz, CDCl ) d 173.88, 130.17,
129.89, 70.74, 64.95, 64.05, 34.36, 32.06, 29.92, 29.84, 29.67,
29.47, 29.31, 29.27, 29.24, 27.37, 27.32, 25.88, 25.04, 22.83,
with Et
2
O and was washed with saturated NH
4
Cl, saturated
3
2
SO . The solvents were
4
18.21, 14.26, ꢀ4.50, ꢀ4.68; HRMS (EI+) calcd for C27
54 4
H O
Si [M]+
NaHCO , brine, and then dried over Na
removed under reduced pressure and the crude product was puri-
fied by flash chromatography on silica gel (petroleum ether) to
afford the desired 2, 3-O-bis-tert-butyldimethylsilanyl-sn-glycerol
as a colorless oil. A stirring solution of the bis-TBS-protected
prepared above in THF at 0 °C was treated with HF-pyridine in
pyridine/THF (prepared by mixing 1 volume of HF-pyridine com-
plex with 4 volume of pyridine and diluted with 4 volume of THF)
dropwise via addition funnel. The reaction was allowed to slowly
warm to rt and stirred for 1 h. The reaction mixture was cooled to
470.3791, found 470.3788.
4.1.10. General procedure for the synthesis of compounds 5–9
To a solution of the POCl (1.05 equiv) in DCM was added TEA
3
(20 equiv) and pyridine (1 equiv) dropwise at 0 °C. After 0.5 h,
alcohol (15a–15e, 1 equiv) in DCM was added dropwise. After
1 h, N-(monomethoxytrityl)-ethanolamine (2.5 equiv) in DCM
2
was added dropwise and the mixture was stirred 1 h before H O
(0.5 mL) was added. After another 1 h stirring, the mixture was
treated with HF-pyridine (2 equiv) and stirred overnight. The
resulting mixture was dissolved with DCM and washed with
0
°C and quenched by the dropwise addition of saturated NaHCO
3
and stirring continued until no gas evolution was observed. The
solution was transferred into a separatory funnel and the two layers
were allowed to separate. The organic layer was collected and the
aqueous layer extracted with EtOAc three times, the combined
organic layers were washed with water and brine, dried over Na2-
H
2
O. The organic layer was concentrated, and the residue was puri-
fied by flash chromatography on silica gel (CHCl /MeOH/H
70:10:1) to afford the compounds (5–9) as white solid.
3
2
O
SO
4
, filtered and concentrated. The residue was purified by flash
4.1.10.1. 1-O-n-Octyl-2-hydroxy-sn-glycero-3-phosphoethanol-
1
chromatography on silica gel (petroleum ether/EtOAc 100:1) to aff-
ored the desired primary alcohol(15a–e) as colorless oil.
amine (5).
3.91–3.79 (m, 2H), 3.79–3.65 (m, 2H), 3.66–3.55 (m, 1H), 3.28–
.15 (m, 4H), 2.97–2.82 (m, 2H), 1.31 (dd, J = 13.8, 6.9 Hz, 2H),
3
62% yield; H NMR (400 MHz, CDCl /MeOD) d
3
1
3
4
.1.9.1. 2-O-tert-Butyldimethylsilanyl-1-O-n-octyl-sn-glycerol
1.13–0.94 (m, 10H), 0.63 (t, J = 6.8 Hz, 3H); C NMR (100 MHz,
CDCl /MeOD) d 71.49, 71.19, 69.48, 67.27, 61.35, 40.21, 31.50,
29.21, 29.11, 28.92, 25.68, 22.28, 13.52; P NMR (162 MHz, CDCl
1
(
15a).
78% yield; H NMR (400 MHz, CDCl
3
) d 3.93–3.82 (m,
3
3
1
1
2
0
7
2
H), 3.70–3.60 (m, 1H), 3.60–3.53 (m, 1H), 3.49–3.35 (m, 4H),
.23–1.97 (m, 1H), 1.56–1.48 (m, 2H), 1.37–1.25 (m, 10H), 0.90–
3
+
/
MeOD) d 0.70; HRMS (ESI+) calcd for C13
H
31NO
6
P ([M+H] )
.84 (m, 12H), 0.10 (s, 6H); 13C NMR (150 MHz, CDCl
328.1889, found 328.1891.
3
) d 72.92,
1.95, 71.29, 65.28, 31.96, 29.80, 29.57, 29.39, 26.25, 26.02,
5.95, 22.80, 18.27, 14.25, ꢀ4.45, ꢀ4.72; HRMS (EI+) calcd for C17
4.1.10.2. 1-O-n-Hexadecyl-2-hydroxy-sn-glycero-3-phosphoeth-
anolamine (6). 57% yield; H NMR (600 MHz, CDCl /MeOD) d
.98–3.85 (m, 2H), 3.85–3.72 (m, 2H), 3.70–3.65 (m, 1H), 3.30–
3.28 (m, 2H), 3.20–3.15 (m, 2H), 2.98–2.89 (m, 2H), 1.52–1.24 (m,
+
H
38
O
3
Si [M] 318.2590, found 318.2592.
3
3
4
.1.9.2. 2-O-tert-Butyldimethylsilanyl-1-O-n-hexadecyl-sn-glyc-
1
13
erol (15b).
75% yield; H NMR (400 MHz, CDCl
3
) d 3.95–3.82
2H), 1.23–1.02 (m, 26H), 0.70 (t, J = 7.0 Hz, 3H);
(150 MHz, CDCl /MeOD) d 71.65, 71.29, 69.61, 67.44, 61.39, 40.28,
31.74, 29.50, 29.46, 29.44, 29.38, 29.34, 29.17, 25.84, 22.48,
C NMR
(
m, 1H), 3.71–3.52 (m, 2H), 3.49–3.27 (m, 4H), 2.13 (dd, J = 7.4,
3
5
0
7
2
.3 Hz, 1H), 1.55–1.48 (m, 2H), 1.25 (s, 26H), 0.91–0.85 (m, 12H),
.10 (d, J = 0.9 Hz, 6H); C NMR (100 MHz, CDCl
1.31, 65.28, 32.08, 29.85, 29.81, 29.76, 29.62, 29.51, 26.26,
1
3
31
3
) d 72.93, 71.96,
13.77; P NMR (162 MHz, CDCl
3
/MeOD) d 4.77; HRMS (ESI+) calcd
+
for C21H46NNaO P ([M+Na] ) 462.2960, found 462.2966.
6
5.95, 22.84, 18.27, 14.27, ꢀ4.44, ꢀ4.72; HRMS (EI+) calcd for C25
+
H
54
O
3
Si [M] 430.3842, found 430.3855.
4.1.10.3. 1-O-cis-Docos-13-enyl-2-hydroxy-sn-glycero-3-phos-
1
phoethanolamine (7).
3
59% yield; H NMR (400 MHz, CDCl /
4
.1.9.3.
2-O-tert-Butyldimethylsilanyl-1-O-cis-docos-13-enyl-
72% yield; 1H NMR (400 MHz, CDCl
) d
.49–5.18 (m, 2H), 3.93–3.82 (m, 1H), 3.73–3.51 (m, 2H), 3.48–
MeOD) d 5.28–5.07 (m, 2H), 3.98–3.84 (m, 2H), 3.82–3.70 (m,
2H), 3.70–3.63 (m, 1H), 3.27 (t, J = 6.8 Hz, 4H), 3.19–3.12 (m, 2H),
1.97–1.70 (m, 4H), 1.47–1.26 (m, 2H), 1.08 (s, 30H), 0.70 (t,
sn-glycerol (15c).
3
5
3
6
1
3
.27 (m, 4H), 2.14 (dd, J = 7.3, 5.3 Hz, 1H), 2.01 (dd, J = 11.6,
.0 Hz, 4H), 1.54 (dd, J = 13.7, 6.8 Hz, 2H), 1.26 (s, 30H), 0.92–0.80
3
J = 6.0 Hz, 3H); C NMR (100 MHz, CDCl /MeOD) d 129.67, 71.65,
71.30, 69.51, 67.44, 39.46, 31.70, 29.55, 29.46, 29.37, 29.30,
1
3
31
(
7
2
m, 12H), 0.10 (s, 6H); C NMR (100 MHz, CDCl
3
) d 130.05, 72.93,
1.95, 71.31, 65.27, 32.06, 29.93, 29.81, 29.74, 29.68, 29.63, 29.48,
7.36, 26.26, 25.95, 22.83, 18.26, 14.26, ꢀ4.45, ꢀ4.72; HRMS (EI+)
29.11, 26.97, 25.83, 22.45, 13.74; P NMR (162 MHz, CDCl
3
/MeOD)
+
d 0.96; HRMS (ESI+) calcd for C27H56NNaO P ([M+Na] ) 544.3743,
6
found 544.3747.
+
64 3
calcd for C31H O Si [M] 512.4625, found 512.4631.
4
.1.10.4. 1-O-Hexadecanoyl-2-hydroxy-sn-glycero-3-phospho-
1
4
.1.9.4.
glycerol (15d).
.01 (m, 2H), 3.99–3.87 (m, 1H), 3.68–3.45 (m, 2H), 2.31 (t,
J = 7.5 Hz, 2H), 1.96 (dd, J = 7.2, 5.8 Hz, 1H), 1.70–1.59 (m, 2H),
2-O-tert-Butyldimethylsilanyl-1-O-hexadecanoyl-sn-
ethanolamine (8).
3
62%; H NMR (400 MHz, CDCl /MeOD) d
1
76% yield; H NMR (400 MHz, CDCl
3
) d 4.17–
3.93–3.86 (m, 2H), 3.86–3.75 (m, 2H), 3.76–3.67 (m, 1H), 3.66–
3.54 (m, 2H), 2.98–2.92 (m, 1H), 2.89–2.82 (m, 1H), 2.18 (t,
J = 7.6 Hz, 2H), 1.54–1.30 (m, 2H), 1.23–0.97 (m, 24H), 0.72 (t,
4
1
3
1
.42–1.12 (m, 24H), 0.98–0.78 (m, 12H), 0.11 (d, J = 1.9 Hz, 6H);
J = 6.8 Hz, 3H); C NMR (150 MHz, CDCl
3
/MeOD) d 174.28, 64.72,
1
3
3
C NMR (100 MHz, CDCl ) d 173.91, 70.74, 64.95, 64.06, 34.37,
61.42, 57.60, 53.27, 41.54, 33.98, 31.80, 29.57, 29.53, 29.50,
29.37, 29.23, 29.17, 29.04, 24.74, 22.55, 13.88;
31
3
2.07, 29.84, 29.80, 29.75, 29.60, 29.51, 29.41, 29.30, 25.87,
P NMR