J.-P. Behr et al.
FULL PAPER
oligonucleotide bearing seven spermine residues would be as
stable as genomic DNA. Besides potential solubility problems
ꢀ30 mL, also at À658C) in a Teflon flask. tBuONO ꢀ1.9 mL, 16 mmol) was
gradually added to the mixture under vigorous stirring and the temperature
was slowly allowed to rise to À58C. The reaction was followed by
disappearance of the starting material on TLC. The polymer was filtered
ꢀ
it would be an overall neutral molecule), such an oligonu-
cleotide may be capable of sequence-selective recognition of
double-stranded DNA by strand invasion. The underlying
Watson ± Crick pairing is general ꢀas opposed to triple helix
formation by Hoogsteen pairing with homopurine sequences)
and may find wide applications in diagnosis and therapy.
off and the solution was neutralized with a 0.1m NaHCO
organic layer was dried over MgSO , evaporated, and the residual oil was
purified on a silica gel column eluted with 1 ± 20% MeOH in CH Cl . The
3
solution. The
4
2
2
by-products were re-silylated ꢀTBS-Cl, imidazole, DMF) and purified by
chromatography as described above. All fractions containing the protected
fluoroinosine ꢀ4) were collected, affording the desired product with 75%
1
overall yield. R
f
ꢀMeOH/CH
2
Cl
2
1:99): 0.70; H NMR ꢀ200 MHz, CDCl
3
):
d 8.25 ꢀs, 1H, H-8), 8.15 ꢀd, 2H, Ar), 7.5 ꢀd, 2H, Ar), 6.4 ꢀt, 1H, H-1'), 4.85
ꢀ
t, 2H, -CH -O), 4.6 ꢀm, 1H, H-3'), 4.0 ꢀm, 1H, H-4'), 3.8 ꢀt, 2H, H-5'), 3.3
2
Experimental Section
ꢀt, 2H, -CH -Ar), 2.6 ꢀm, 1H, H-2'), 2.4 ꢀm, 1H, H-2'), 0.92, 0.88 ꢀ2s, 2 Â
2
1
9
9
H, 2 Â SiC-CH
3
), 0.07, 0.05 ꢀ2s, 2 Â 6H, 2 Â Si-CH
3
);
F NM R
Abbreviations: EtOH: ethanol, TBS: tert-butyldimethylsilyl, DMF: N,N-
dimethylformamide, DBU: 1,8-diaza-bicyclo[5.4.0]undec-7-ene, NPE:
ꢀ188.3 MHz, CD
3
CN, TFA as reference): d 29.9 ꢀs); FAB-MS ꢀpositive
mode): m/z ꢀ%): calcd for C30
H
46FN
5
O
6
Si
2
ꢀ647.30); found 648.5 ꢀ20)
5): 3',5'-O-Di-
2
-ꢀ4-nitrophenyl)ethyl, DEAD: diethyl azodicaboxylate, PVPHF: poly[4-
vinylpyridinium polyꢀhydrogen fluoride)], tBuONO: tert-butylnitrite,
TEA: triethylamine, TEA-ꢀHF) : triethylamine trisꢀhydrogen fluoride),
DMT: 4,4'-dimethoxytrityl, spermino: -NH-ꢀCH -NH-ꢀCH -NH-
, TFA: trifluoroacetate, TMG: 1,1,3,3-tetramethylguanidine,
Pꢀ-OCH CH CN): 2-cyanoethyl tetraisopropylphosphorodiamidite,
[MH] , 304.2 ꢀ100) [M À riboseH] .
6-O-[2- 4-Nitrophenyl)ethyl]-2'-deoxy-2-fluoroinosine
3
TBS-6-O-NPE-2'-deoxy-2-fluoroinosine ꢀ4) ꢀ700 mg, 1.08 mmol) was dis-
2
)
3
2
)
4
solved in THF ꢀ6 mL) and mixed with TEA-ꢀHF) ꢀ1.06 mL, 6.48 mmol).
3
ꢀ
ꢀ
CH
iPr)
2
)
3
-NH
2
The mixture was stirred under argon for 17 h at room temperature. The
2
2
2
solvent was evaporated, the residue was dissolved in CH Cl and purified
2
2
TEAA: triethylammoniumacetat, MALDI-TOF: matrix-assisted laser
desorption/ionization ± time-of-flight, PAGE: polyacrylamide gel electro-
phoresis.
2 2
by silica gel column chromatography with 0 ± 5% MeOH in CH Cl . The
solvent was evaporated in vacuo to give a beige foam ꢀ400 mg, 88%). Rf
1
ꢀMeOH/CH Cl 5:95): 0.45;
2
2
H NMR ꢀ300 MHz, CDCl ): d 8.18 ꢀd, 2H,
3
General: Chemicals and solvents were purchased from Fluka, Aldrich,
Merck, Janssen, Carlo Erba and SDS. TLC analysis was performed on
precoated Merck silica gel 60 F254 plates using phosphomolybdic acid as
indicator. Flash silica gel chromatography was performed with silica Si60
Ar), 8.00 ꢀs, 1H, H-8), 7.50 ꢀd, 2H, Ar), 6.33 ꢀdd, 1H, H-1'), 4.86 ꢀt, 2H,
-CH
2H, -CH
mode): m/z ꢀ%): calcd for C18
[MH] , 304.1 ꢀ100) [M À ribose H]
2
-O), 4.80 ꢀm, 1H, H-3'), 4.20 ꢀm, 1H, H-4'), 3.9 ꢀm, 2H, H-5'), 3.33 ꢀt,
-Ar), 2.96 ꢀm, 1H, H-2'), 2.37 ꢀm, 1H, H-2'); FAB-MS ꢀpositive
ꢀ419.12); found 420.2 ꢀ55)
2
H
5 6
18FN O
1
31
.
ꢀ
40 ± 63 mm, Merck) and the indicated solvent system. H, P NMR spectra
1
9
were recorded on a Bruker DPX-300 spectrometer ꢀ300 MHz) and F on a
Bruker WP-200 SY ꢀ200 MHz).
5'-O- 4,4'-Dimethoxytrityl)-6-O-[2- 4-nitrophenyl)ethyl]-2'-deoxy-2-fluo-
roinosine 6): 6-O-NPE-2'-deoxy-2-fluoroinosine ꢀ5) ꢀ400 mg, 0.95 mmol)
was coevaporated with dry pyridine and the residue was dissolved in
pyridine ꢀ10 mL). DMT chloride ꢀ520 mg, 1.53 mmol) was added and the
solution was kept under argon. After 17 h the reaction was quenched with
MeOH ꢀ10 mL) and the solvent was evaporated. The residue was dissolved
3
',5'-O-Di-tert-butyldimethylsilyl-2'-deoxyguanosine 2): 2'-deoxyguano-
sine ꢀ1) ꢀ1 g, 3.5 mmol), tert-butyldimethylsilyl chloride ꢀ2.1 g, 13.9 mmol),
and imidazole ꢀ1.68 g, 24.7 mmol) were dissolved in DMF ꢀ2 mL) and
stirred at room temperature. After 30 min the solution was clear and a
white solid began to precipitate. After 24 h the reaction was quenched with
ethanol ꢀ10 mL) and stirred for an additional 30 min. The precipitate was
filtered, washed with cold ethanol, crystallized in ethanol at À208C and
in CH
of TEA in CH
2
Cl
2
and purified by chromatography ꢀsilica gel pretreated with 1%
Cl ) with 1 ± 4% MeOH in CH Cl containing 1% TEA to
ꢀTEA/MeOH/CH Cl 1:5:94):
2
2
2
2
yield the title compound ꢀ520 mg, 76%). R
f
2
2
1
dried under vacuum to give 2 as a fine white powder ꢀ1.56 g, 90%). R
f
0.50; H NMR ꢀ300 MHz, CDCl
3
): d 8.17 ꢀd, 2H, Ar), 8.05 ꢀs, 1H, H-8),
1
ꢀ
EtOH/CH
2
Cl
2
1:9): 0.50; H NMR ꢀ200 MHz, [D
6
]DMSO): d 8.1 ꢀd, 2H,
),
-O), 4.6 ꢀm, 1H, H-3'), 3.9 ꢀm, 1H, H-4'), 3.8 ꢀt, 2H, H-5'),
-Ar), 2.6 ꢀm, 1H, H-2'), 2.4 ꢀm, 1H, H-2'), 0.92, 0.88 ꢀ2s, 2 Â
); FAB-MS ꢀpositive
7.48 ꢀd, 2H, Ar), 7.38 ꢀd, 2H, Ar), 7.25 ꢀm, Ar), 6.79 ꢀdd, 4H, Ar), 6.38 ꢀt,
1H, H-1'), 4.83 ꢀt, 2H, -CH -O), 4.66 ꢀm, 1H, H-3'), 4.15 ꢀm, 1H, H-4'), 3.77
ꢀs, 6H, -O-CH ), 3.4 ꢀm, 2H, H-5'), 3.31 ꢀt, 2H, -CH -Ar), 2.7 ꢀm, 1H, H-2'),
2.5 ꢀm, 1H, H-2'); F NMR ꢀ188.3 MHz, CD
CN, TFA as reference): d
5 8
30.3 ꢀs); FAB-MS ꢀpositive mode): m/z ꢀ%): calcd for C39H36FN O
Ar), 8.0 ꢀs, 1H, H-8), 7.6 ꢀd, 2H, Ar), 6.3 ꢀt, 1H, H-1'), 4.85 ꢀbrs, 2H, -NH
2
2
4
3
9
.7 ꢀt, 2H, -CH
.3 ꢀt, 2H, -CH
H, 2 Â SiC-CH
2
3
2
1
9
2
3
3
), 0.07, 0.05 ꢀ2s, 2 Â 6H, 2 Â Si-CH
3
mode): m/z ꢀ%): calcd for C22
H
41
N
5
O
4
Si
2
ꢀ495.27); found 1013.5 ꢀ13)
ꢀ721.25); found 722.2 ꢀ2) [MH] , 303.1 ꢀ100) [DMT] .
'-O- 4,4'-Dimethoxytrityl)-6-O-[2- 4-nitrophenyl)ethyl]-2- 3,9,13-triaza-
[
2MNa] , 518.3 ꢀ35) [MNa] , 496.3 ꢀ11) [MH] , 174.1 ꢀ85) [M À
5
riboseNa] , 152.1 ꢀ100) [M À ribose H] .
',5'-O-Di-tert-butyldimethylsilyl-6-O-[2- 4-nitrophenyl)ethyl]-2'-deoxy-
guanosine 3): 3',5'-O-Di-TBS-2'-deoxyguanosine ꢀ2) ꢀ5.8 g, 11.7 mmol),
PPh ꢀ6.15 g, 23.4 mmol), and NPE alcohol ꢀ3.90 g, 23.3 mmol) were
tridecyl)-2'-deoxyguanosine 7): 5'-O-DMT-6-O-NPE-2'-deoxy-2-fluoro-
inosine ꢀ6) ꢀ715 mg, 0.99 mmol) and spermine ꢀ1 g, 4.95 mmol) were
dissolved in MeOH ꢀ40 mL, distilled over magnesium). The reaction
3
2 2
mixture was stirred at 558C under argon for 4 h, then CH Cl ꢀ70 mL) and
3
suspended in dry dioxane ꢀ100 mL). The mixture was stirred for 15 min
under argon and DEAD ꢀ3.7 mL, 23.4 mmol) were added. The suspension
went pink and turned to a clear yellow solution. After 24 h the solvent was
evaporated and the product was purified by silica gel chromatography
iPrOH ꢀ10 mL) were added. The organic layer was washed with water until
its pH was neutral. When separation of the phases was too slow, small
amounts of iPrOH were added. The organic layer was dried over MgSO
4
and evaporated in vacuo. The residue was lyophilized with a benzene/
1
ꢀ
CH
2
Cl
2
/hexane 9:1). The fraction containing the protected compound was
Cl . The desired
ꢀEtOH/CH Cl
MeOH 9:1 mixture providing a white powder ꢀ685 mg, 77%). H NM R
further chromatographed with 1 ± 5% acetone in CH
product was obtained as yellowish foam ꢀ6.01 g, 80%). R
1
2
2
ꢀ300 MHz, CDCl
7.3 ꢀm, Ar), 6.76 ꢀdd, 4H, Ar), 6.26 ꢀt, 1H, H-1'), 4.86 ꢀm, 1H, H-3'), 4.72 ꢀt,
2H, -CH -O), 4.07 ꢀm, 1H, H-4'), 3.79 ꢀs, 6H, -O-CH ), 3.4 ꢀm, 2H, H-5'),
3.27 ꢀt, 2H, -CH -Ar), 2.7 ꢀm, H-2', C-CH -NH-), 1.7 ꢀm, C-CH -C); FAB-
MS ꢀpositive mode): m/z ꢀ%): calcd for C49
3
): d 8.15 ꢀd, 2H, Ar), 7.71 ꢀs, 1H, H-8), 7.47 ꢀd, 2H, Ar),
f
2
2
1
:9): 0.69; H NMR ꢀ200 MHz, [D
4
]MeOH): d 8.1 ꢀd, 2H, Ar), 8.0 ꢀs, 1H,
), 4.7 ꢀt, 2H,
-O), 4.6 ꢀm, 1H, H-3'), 3.9 ꢀm, 1H, H-4'), 3.8 ꢀt, 2H, H-5'), 3.3 ꢀt, 2H,
-Ar), 2.6 ꢀm, 1H, H-2'), 2.4 ꢀm, 1H, H-2'), 0.92, 0.88 ꢀ2s, 2 Â 9H, 2 Â
); elemental analysis calcd ꢀ%)
2
3
H-8), 7.6 ꢀd, 2H, Ar), 6.3 ꢀt, 1H, H-1'), 4.85 ꢀbrs, 2H, -NH
2
2
2
2
-
-
CH
CH
2
H
61
N
9
O
8
P ꢀ903.46); found 904.1
ꢀ2) [MH] , 602.0 ꢀ5) [M À DMTH] , 303.0 ꢀ100) [DMT] .
'-O- 4,4'-Dimethoxytrityl)-6-O-[2- 4-nitrophenyl)ethyl]-2-[tris-N,N',N''-
2
SiC-CH
for C30
1
3
), 0.07, 0.05 ꢀ2s, 2 Â 6H, 2 Â Si-CH
3
5
H
48
N
6
O
6
Si
2
ꢀ644.32): C 55.87, H 7.50, N 13.03; found C 55.71, H 7.31, N
trifluoroacetamido- 3,9,13-triazatridecyl)]-2'-deoxyguanosine 8): 1,1,3,3-
Tetramethylguanidine ꢀ1.4 mL, 11 mmol) and ethyl trifluoroacetate
2.98; FAB-MS ꢀpositive mode): m/z ꢀ%): 1289.6 ꢀ3) [2MH] , 645.3 ꢀ22)
[
MH] , 301.1 ꢀ100) [M À riboseH] .
',5'-O-Di-tert-butyldimethylsilyl-6-O-[2- 4-nitrophenyl)ethyl]-2'-deoxy-2-
fluoroinosine 4): 3',5'-O-Di-TBS-6-O-NPE-2'-deoxyguanosine ꢀ3) ꢀ2.6 g,
.03 mmol) was dissolved in anhydrous toluene ꢀ30 mL) and cooled to
À658C. This solution was added to a suspension of PVPHF ꢀ8 g) in toluene
ꢀ
2.7 mL, 22 mmol) were added to a solution of 5'-O-DMT-6-O-NPE-2-
3
spermino-2'-deoxyinosine ꢀ7) ꢀ680 mg, 0.75 mmol) in MeOH ꢀ25 mL). The
reaction was stirred under argon at room temperature for 17 h, AcOEt
ꢀ12 mL) was added and the solvent was evaporated in vacuo ꢀrepeated
4
twice). The residue was washed with Et
2
O and purified on a neutral
4192
ꢁ WILEY-VCH Verlag GmbH, D-69451 Weinheim, 2000
0947-6539/00/0622-4192 $ 17.50+.50/0
Chem. Eur. J. 2000, 6, No. 22