Journal of Natural Products
Article
4
9
3
3
1
1
0
.47−4.41 (m, 1H), 4.33 (dd, J = 9.2, 3.3 Hz, 1H), 4.26 (dd, J = 16.4,
.6 Hz, 1H), 4.15 (p, J = 4.99 Hz, 1H), 3.88 (dd, J = 10.2, 4.8 Hz, 1H),
.77 (dd, J = 11.2, 2.6 Hz, 1H), 3.48−3.38 (m, 2H), 3.27 (dd, J = 16.4,
.6 Hz, 1H), 2.79−2.61 (m, 2H), 2.56−2.46 (m, 1H), 2.41−2.30 (m,
H), 2.30−2.18 (m, 2H), 2.05−1.92 (m, 1H), 1.51−1.39 (m, 1H),
.34 (s, 9H), 1.30 (s, 9H), 1.33−1.28 (m, 1H), 1.22−1.11 (m, 1H),
.97 (d, J = 6.9 Hz, 3H), 1.02−0.93 (m, 2H), 0.93−0.85 (m, 9H), 0.83
OH, Fmoc-Ile-OH, Fmoc-D-Gln-OH, Fmoc-Gly-OH, and Fmoc-
Tyr(TBS)-OH according to the SPPS protocol. Fmoc deprotection
was performed as stated to produce the free amine on the Tyr residue.
1
Cleavage from the resin as detailed yielded the crude product. The
product was then purified via flash chromatography (eluent:
60:10:5:2.5 v/v EtOAc/MeCN/MeOH/H O) to yield the desired
2
cyclic imine 12a as an off-white powder (67.7 mg, 24% yield): IR
(
d, J = 6.6 Hz, 6H); 13C NMR (100 MHz, CDCl ) δ 173.31, 172.68,
(neat) 3296, 2958, 2929, 2857, 2539, 1647, 1541, 1510, 1258, 838
3
−
1 1
1
1
5
2
72.66, 171.30, 171.01, 170.94, 170.88, 165.7, 154.0, 144.3, 132.5,
30.1, 128.7, 128.3, 127.4, 124.1, 78.4, 76.2, 74.5, 71.0, 61.8, 59.3, 57.7,
4.4, 53.6, 50.2, 41.4, 40.7, 40.4, 36.6, 33.1, 29.0, 28.8, 28.0, 25.0, 24.2,
cm ; H NMR (400 MHz, DMSO-d ) δ 8.54 (d, J = 6.4 Hz, 1H),
6
8.24−8.11 (m, 2H), 7.86−7.71 (m, 2H), 7.38 (d, J = 9.7 Hz, 1H), 7.31
(s, 1H), 6.97 (d, J = 8.5 Hz, 2H), 6.79 (d, J = 1.7 Hz, 1H), 6.77 (s,
1H), 6.70 (d, J = 8.4 Hz, 2H), 5.58 (t, J = 5.4 Hz, 1H), 4.92 (td, J =
9.9, 6.1 Hz, 1H), 4.42−4.27 (m, 3H), 4.19 (dd, J = 9.2, 3.9 Hz, 1H),
4.02 (dd, J = 7.6, 4.2 Hz, 1H), 3.89 (td, J = 9.7, 6.7 Hz, 1H), 3.79−3.60
(m, 1H), 3.58 (dd, J = 11.2, 2.5 Hz, 1H), 3.43 (dd, J = 16.7, 2.5 Hz,
1H), 3.11 (dd, J = 13.2, 2.3 Hz, 1H), 2.60−2.55 (m, 1H), 2.31−2.19
(m, 1H), 2.18−1.95 (m, 3H), 1.81−1.71 (m, 2H), 1.45−1.26 (m, 3H),
1.11−0.98 (m, 1H), 0.94 (s, 9H), 0.92 (d, J = 6.3 Hz, 3H), 0.90−0.84
(m, 7H), 0.83 (s, 3H), 0.81 (d, J = 6.7 Hz, 3H), 0.73 (d, J = 6.5 Hz,
+
3.2, 21.2, 19.8, 16.7, 16.5, 12.0; HRESIMS m/z 1121.6438 [M + Na]
(calcd for C H N O Na, 1121.6410).
63 86 8 9
(
S)-Allyl 2-((((9H-fluoren-9-yl)methoxy)carbonyl)amino)-3-(tert-
butoxy)propanoate (8). To a cooled solution of Fmoc-L-Ser(tBu)
4.00 g, 10.43 mmol) in DMF (9.5 mL) at 0 °C was added dropwise
DIPEA (3.64 mL, 20.9 mmol) followed by allyl bromide (1.81 mL,
09 mmol). The mixture was allowed to warm to room temperature
(
2
and stirred for 16 h. The reaction was then diluted with EtOAc (25
mL). The solution was washed with H O (3 × 25 mL), dried
3H), 0.16 (s, J = 3.0 Hz, 6H); 13C NMR (101 MHz, DMSO-d ) δ
2
6
(
Na SO ), and concentrated in vacuo. The resulting solid was purified
173.23, 172.32, 172.13, 172.06, 170.82, 169.82, 169.76, 165.69, 153.52,
131.17, 130.13, 119.32, 73.29, 62.23, 59.21, 57.52, 53.33, 52.52, 49.21,
(39.90, 39.72, 39.41 HSQC), 35.23, 31.26, 28.45, 25.75, 25.52, 25.25,
24.29, 23.62, 23.03, 20.92, 19.18, 16.99, 15.95, 11.95, −4.47, −4.48;
2
4
by column chromatography (eluent: 90:10 hexanes/EtOAc) to afford
the desired allyl ester 8 (3.75 g, 85%) as a white powder: IR (neat)
3
−1 1
443, 3338, 2973, 1726, 1508, 1198, 1103, 1085, 759, 740 cm ; H
+
NMR (400 MHz, CDCl ) δ 7.80 (d, J = 7.5 Hz, 2H), 7.62 (t, J = 7.0
HRESIMS m/z 881.4924 [M + Na] (calcd for C H N O SiNa,
3
42 70
8
9
Hz, 2H), 7.43 (t, J = 7.4 Hz, 2H), 7.35 (t, J = 7.4 Hz, 2H), 5.95 (ddd, J
881.4927).
=
1
22.7, 10.8, 5.6 Hz, 1H), 5.71 (d, J = 9.0 Hz, 1H), 5.38 (dd, J = 17.2,
.2 Hz, 1H), 5.27 (dd, J = 10.5, 0.96 Hz, 1H), 4.70 (dd, J = 5.6, 0.98
Hz, 2H), 4.56 (dt, J = 8.9, 2.9 Hz, 1H), 4.52−4.34 (m, 2H), 4.29 (t, J =
Tyr(TBS) -Gly -D-Gln -Ile -Ser(TIPS) -Val -Leu Cyclic Imine (12b).
1
2
3
4
5
6
7
Fmoc-Leu-loaded Weinreb AM resin (1000 mg, substitution = 0.295
mmol) was sequentially coupled with Fmoc-Val-OH, Fmoc-Ser(TBS)-
OH, Fmoc-Ile-OH, Fmoc-D-Gln-OH, Fmoc-Gly-OH, and Fmoc-
Tyr(TBS)-OH according to the SPPS protocol. Fmoc deprotection
7
1
1
1
4
.2 Hz, 1H), 3.90 (dd, J = 9.0, 2.8 Hz, 1H), 3.65 (dd, J = 9.0, 3.1 Hz,
13
H), 1.24−1.13 (br s, 9H); C NMR (101 MHz, CDCl ) δ 170.36,
56.15, 144.02, 143.84, 141.31, 141.30, 131.72, 127.71, 127.09, 127.07,
25.22, 125.17, 119.98, 118.48, 73.50, 67.21, 65.97, 62.15, 54.73,
3
was performed as stated to produce the free amine on the Tyr residue.
1
Cleavage from the resin as detailed yielded the crude product. The
product was then purified via flash chromatography (eluent:
+
7.18, 27.33; HRESIMS m/z 424.2108 [M + H] (calcd for
+
C H NO 424.2119), 446.1922 [M + Na] (calcd for
70:10:5:2.5 v/v EtOAc/MeCN/MeOH/H O) to yield the desired
2
5
30
5,
2
C H NO Na, 446.1938).
cyclic imine 12b as an off-white powder (19.8 mg, 7% yield): IR (neat)
3305, 2959, 2857, 2478, 1651, 1510, 1462, 1261, 918 cm ; H NMR
25
29
5
−1 1
(
S)-Allyl 2-((((9H-fluoren-9-yl)methoxy)carbonyl)amino)-3-
(
(tertbutyldimethylsilyl)oxy)-propanoate (9). To a solution of
(400 MHz, DMSO-d ) δ 8.44 (d, J = 6.0 Hz, 1H), 8.08 (d, J = 8.8 Hz,
6
TFA/H O (4:1 v/v, 34 mL) was added 8 (3.27 g, 7.72 mmol).
1H), 7.91−7.84 (m, 1H), 7.68 (s, 1H), 7.52 (d, J = 8.7 Hz, 1H), 7.33
(s, 1H), 7.01 (d, J = 1.7 Hz, 1H), 6.91 (d, J = 8.4 Hz, 2H), 6.78 (s, J =
14.8 Hz, 1H), 6.73 (s, 1H), 6.70 (d, J = 8.4 Hz, 2H), 4.90−4.81 (m,
1H), 4.38−4.29 (m, 3H), 4.12 (dd, J = 8.5, 4.0 Hz, 1H), 4.05 (d, J =
6.5 Hz, 1H), 3.83 (dd, J = 13.2, 7.9 Hz, 2H), 3.63 (dd, J = 10.7, 2.6 Hz,
1H), 3.43 (dd, J = 16.5, 5.5 Hz, 1H), 3.15−3.11 (m, 1H), 2.53 (d, J =
2.4 Hz, 1H), 2.22 (ddd, J = 15.5, 11.7. 5.3 Hz, 2H), 2.14 (dd, J = 9.5,
6.3 Hz, 1H) 2.02 (ddd, J = 9.9, 7.9, 4.3 Hz, 3H), 1.84−1.77 (m, 2H),
1.45−1.36 (m, 3H), 1.05 (d, J = 3.1 Hz, 9H), 0.94 (s, 18H), 0.85 (d, J
= 3.7 Hz, 3H), 0.83 (d, J = 4.4 Hz, 6H), 0.78 (d, J = 6.5 Hz, 5H), 0.16
2
After 2 h the mixture was concentrated in vacuo to afford the desired
alcohol intermediate as a yellow solid. This solid was immediately
redissolved into CH Cl2 (38.6 mL), followed by the addition of
2
imidazole (1.68 g, 24.7 mmol). The mixture was then cooled to 0 °C
prior to the addition of TBS-Cl (2.91 g, 19.3 mmol). The reaction was
then allowed to stir for 16 h before quenching with H O. Extraction
2
was performed using CH Cl (3 × 75 mL). The organic fractions were
2
2
then combined, dried (Na SO ), and concentrated in vacuo. The
2
4
resulting residue was purified by column chromatography (eluent
0:10 v/v hexanes/EtOAc) to afford the TBS-protected ether 9 (3.56
g, 95.8%) as a white powder: IR (neat) 3443, 3346, 2952, 2930, 1727,
(s, 6H); 13C NMR (176 MHz, DMSO-d ) δ 173.42, 172.51, 171.58,
9
6
171.51, 170.33, 170.24, 170.07, 166.27, 166.26, 153.61, 130.78, 130.71,
130.22, 119.79, 119.35, 119.30, 73.76, 64.31, 58.27, 53.16, 49.74,
45.61, 40.49, 40.02, 35.34, 35.32, 31.27, 28.75, 25.58 25.55, 24.29,
23.44, 22.85, 21.17, 19.11, 18.07, 17.95, 17.94, 17.88, 17.80, 17.79,
15.63, 11.80, 11.66, 11.40, 11.35, 8.60, −4.49, −4.52; HRESIMS m/z
−
1 1
1507, 1253, 1198, 837, 740 cm ; H NMR (400 MHz, CDCl ) δ 7.80
3
(
d, J = 7.5 Hz, 2H), 7.65 (t, J = 8.0 Hz, 2H,), 7.43 (t, J = 7.5 Hz, 2H),
.34 (t, J = 7.4 Hz, 2H), 5.95 (ddd, J = 22.7, 10.9, 5.8 Hz, 1H), 5.69 (d,
J = 8.6 Hz, 1H), 5.33 (dd, J = 37.0, 13.8 Hz, 2H), 4.70 (d, J = 5.70 Hz,
7
+
2
7
0
H), 4.50 (dt, J = 8.70, 2.60 Hz, 1H), 4.47−4.35 (m, 2H), 4.29 (t, J =
1037.6237 [M + Na] (calcd for C H N O Si Na, 1037.6262).
51
90
8
9
2
.3 Hz, 1H), 4.14 (dd, J = 10.1, 2.5 Hz, 1H), 3.97−3.86 (m, 1H),
(S)-2-((((9H-Fluoren-9-yl)methoxy)carbonyl)amino)-3-
13
.96−0.85 (br s, 9H), 0.13−0.00 (d, 6H); C NMR (101 MHz,
((triisopropylsilyl)oxy)propanoic Acid (13). Compound 13 was
3
0
1
CDCl ) δ 170.17, 155.96, 144.00, 143.79, 141.32, 141.31, 131.58,
prepared according to the procedure reported by Aguda et al.
H
3
NMR and 13C NMR spectra were in agreement with the previously
reported data.
1
6
4
+
27.72, 127.09, 127.07, 125.22, 125.15, 119.99, 118.81, 67.24, 66.13,
3.69, 56.04, 47.15, 25.75, 18.23, −5.50, −5.56; HRESIMS m/z
+
82.2348 [M + H] (calcd for C H NO Si, 482.2357), 504.2163 [M
Scytonemide A (1). Cyclic imine 12a (25 mg, 0.03 mmol) was
dissolved in MeOH (3 mL). TBAF (1 M in THF, 33 μL, 0.03 mmol)
was then added dropwise. The reaction mixture was allowed to stir for
16 h. Solvent was then removed in vacuo, yielding an off-white
powder. Trituration with hexanes (3 × 5 mL) was then performed to
remove any nonpolar impurities. Crude material was then purified by
column chromatography (eluent 60:10:5:2.5 v/v EtOAc/MeCN/
2
7
36
5
+
Na] (calcd for C H NO SiNa, 504.2177).
27
35
5
(
S)-2-((((9H-Fluoren-9-yl)methoxy)carbonyl)amino)-3-((tert-
butyldimethylsilyl)oxy)propanoic Acid (10). Compound 10 was
29
1
prepared according to the procedure reported by Gagnon et al.
H
NMR and 13C NMR spectra were in agreement with the previously
reported data.
Tyr(TBS) -Gly -D-Gln -Ile -Ser -Val -Leu Cyclic Imine (12a).
Fmoc-Leu-loaded Weinreb AM resin (1000 mg, substitution = 0.295
mmol) was sequentially coupled with Fmoc-Val-OH, Fmoc-Ser(TBS)-
MeOH/H O) to yield the desired product 1 (11.5 mg, 51%) as a
1
2
3
4
5
6
7
2
25
25
white solid: [α]D −14 (c 0.05, MeOH), isolated scytonemide A, [α]
D
1
−15 (c 0.0013, MeOH); IR (KBr) 3613, 3346, 2962, 2365, 1647,
H
J. Nat. Prod. XXXX, XXX, XXX−XXX