Tripodal molecules for the promotion of phosphoester hydrolysis

Article abstract of DOI:10.1039/c4cc00333k

A series of low molecular weight tripodal amide/histidine-containing compounds (1-2) have been synthesised and shown to increase the rate of bis-(p-nitrophenyl) phosphate (BNPP) and soman (GD) breakdown in buffered aqueous solution. This journal is the Partner Organisations 2014.

Full text of DOI:10.1039/c4cc00333k

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Tripodal molecules for the promotion of
phosphoester hydrolysis†
Cite this: Chem. Commun., 2014,
50, 6217
Jennifer R. Hiscock,a Mark R. Sambrook,b Philippa B. Cranwell,a Pat Watts,b
Jack C. Vincent,b David J. Xuereb,a Neil J. Wells,a Robert Rajaa and Philip A. Gale*a
Received 15th January 2014,
Accepted 23rd April 2014
DOI: 10.1039/c4cc00333k
www.rsc.org/chemcomm
A series of low molecular weight tripodal amide/histidine-containing Compound 1 was shown to significantly enhance the hydrolysis rate
compounds (1–2) have been synthesised and shown to increase the of GD at pD 6.5 in buffered solution (where pD = pH + 0.4). We
rate of bis-(p-nitrophenyl) phosphate (BNPP) and soman (GD) break- designed the tripodal systems to interact with NAs via multiple
down in buffered aqueous solution.
hydrogen bonding interactions that would both bind the substrate
and potentially activate it towards hydrolysis. We have shown that
these compounds enhance the breakdown rate of GD and BNPP
(an activated DNA model23) in aqueous buffered solutions.
Organophosphorus (OP) nerve agents (NAs) are a class of chemical
warfare agents that include the G-series such as sarin (GB) and
soman (GD), and the V-series including VX. These compounds are
highly toxic to biological systems as they inhibit the function of the
enzyme acetylcholinesterase.1 Our interest in anion (and in parti-
cular phosphate) complexation led us to study the application of
hydrogen bond donor systems in the recognition of OP NAs such as
GD.2,3 Over the last thirty years much effort has been devoted to the
synthesis of catalysts capable of mimicking the rate enhancing
properties of naturally occurring enzymes.4–11 More recently there
has been a concerted effort to utilise synthetic, peptide based
molecules as organocatalysts, eliminating the need for metal ions
in these systems.12–14 Histidine contains an imidazole group that
when incorporated into a molecular/peptide structure can result in
the catalysis of hydrolysis reactions due to its acid/base properties.15–17
Breslow and co-workers pioneered the use of bis-imidazoles for phos-
phate ester hydrolysis.18,19 Later work by Schmuck and co-workers
showed that the presence of a histidine residue in the structure of a
catalyst is able to promote phosphoester hydrolysis.20
Compound 1 was synthesised by the reaction of tris(2-aminoethyl)-
amine (tren) with N-acetyl-L-histidine monohydrate using 2-(1H-
benzotriazole-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate
(HBTU) as the peptide coupling agent in a solution of N,N-
dimethylformamide and N,N-diisopropylethylamine affording the
product in 61% yield. Compound 2 was synthesised by the reaction
of mono-BOC protected tris(2-aminoethyl)amine with two equivalents
of methoxyacetic acid in chloroform, using 1,10-carbonyldiimidazole
(CDI) as the amide coupling agent affording the intermediate in 83%
yield. Following a deprotection the resultant amine was reacted with
N-acetyl-L-histidine monohydrate under the same conditions resulting
in a yield of 56%. Compound 3 was synthesised by the reaction of
tris(2-aminoethyl)amine with methoxyacetic acid in chloroform using
CDI as the amide coupling agent affording the product in 22% yield.
In this article we report the synthesis of two new organic tripodal
molecules (1 and 2) appended with N-acetyl-protected histidine
residues and a model compound 3. There are a number of examples
of tripodal hydrogen bond donating receptors for tetrahedral guest
species including phosphates.21,22 The design of the molecules
reported here was inspired by these previous reports in that the
compounds may bind the nerve agent allowing the appended
N-acetyl-protected histidine residues to interact with the substrate.
a Chemistry, University of Southampton, Southampton, UK SO17 1BJ.
E-mail: philip.gale@soton.ac.uk; Fax: +44 (0)23 8059 6805; Tel: +44 (0)23 8059 3322
b Detection Department, Dstl Porton Down, Salisbury, SP$ 0JQ, UK.
E-mail: m.sambrook@dstl.gov.uk; Tel: +44 (0)1980613306
Studies of the breakdown of BNPP (5 mM) were conducted in
aqueous 2,2-bis(hydroxymethyl)-2,20,200-nitrilotriethanol (bis–tris)
† Electronic supplementary information (ESI) available: Experimental detail,
characterisation data for compound 1. See DOI: 10.1039/c4cc00333k
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(20 mM) buffered stock solutions at pH 6.1 or 7.1 and 20–23 1C.
The compounds were added to portions of these stock solutions
in 20, 50 and 100 mol% with respect to BNPP. Imidazole was
added in 60, 150 and 300 mol% as compound 1 contains three
histidine groups per molecule therefore the mol% of imidazole
is matched to the maximum amount of histidine residues in
solution in any one experiment. The breakdown of BNPP was
monitored by UV-Vis spectroscopy, following the evolution of
an absorbance band centred at 400 nm that corresponds to the
formation of the breakdown product p-nitrophenolate.
A mechanism for the catalytic hydrolysis of BNPP by two
histidine residues has been reported by Dixon and co-workers.24
In this example one of the histidine imidazole residues acts as a
nucleophile while the second histidine imidazole residue acts as Fig. 2 Increasing concentration of p-nitrophenolate formed as BNPP is
broken down under different pH conditions upon the addition of 100 mol%
an acid, protonating the p-nitrophenolate leaving group.
Fig. 1 shows the formation of p-nitrophenolate as BNPP is
hydrolysed over time at pH 6.1 and 7.1 in either the absence or
compound 2 and 3 with respect to BNPP. The background rate of BNPP
breakdown under these conditions was also monitored. Residual R2 values
for the individual fits r1%. The background is taken from an average of two
experiments. Individual fits and calculations can be found in the ESI.†
presence of 100 mol% of compound 1 and 300 mol% imidazole.
The greatest enhancement to the BNPP breakdown by compound 1
is observed at pH 6.1. This may be due to the increased proportion
of protonated histidine residues available to supply a proton to the
p-nitrophenolate leaving group. The same trend was observed upon
addition of imidazole to the BNPP solution. BNPP breakdown was
found to be enhanced to a much greater extent with the addition of
compound 1 over imidazole. We postulate that this may be due to
the structure of compound 1 which holds the three histidine
residues in close proximity to each other and also to the substrate
through the formation of hydrogen bonds via the amide donor
groups, thus increasing the latter’s effective concentration.
Fig. 2 shows the results of the same experiment conducted with
compounds 2 and 3. Compound 2 contains a single histidine group
and shows contrasting behaviour to compound 1. At pH 6.1 a lower
degree of activity is observed when compared to compound 1.
However at pH 7.1 after 750 h a higher proportion of the BNPP has
been broken down than observed with compound 1. This may be
because compound 2 is increasing the rate of BNPP breakdown
through the utilisation of basic properties rather than a combi-
nation of acidic and basic properties as expected in the case of
compound 3. Compound 3 contains no histidine groups however
increased rates of BNPP breakdown are still observed at both
pH 7.1 and 6.1 with the greatest enhancement occurring at pH 6.1.
As compound 1 was found to be the most active of those
compounds tested towards the breakdown of BNPP, it was also
investigated for the potential to accelerate the hydrolysis of
soman (GD). Compound 3 was used as a control in these experi-
ments. Studies for the hydrolytic breakdown of GD (6 mM) were
conducted in deuterated bis–tris (20 mM) buffered stock solutions
at pD 6.5 (where pD = pH + 0.4) and 20 1C. The conditions chosen
were identical to those found to enhance the breakdown of the
model compound BNPP to the greatest extent. Compounds 1 and
3 were added to portions of these stock solutions in 100 mol% to
GD as appropriate and the breakdown of GD monitored using
1
both H and 31P NMR.
Under the experimental conditions two hydrolysis products
were identified. The main product was found to be pinacolyl
methylphosphonate (PMP) formed via hydrolysis of the P–F
bond. Methylphosphonic acid (MP) was also detected in small
quantities due to further hydrolysis of PMP.
Experiments with GD were run for 16–18 hour periods. A stack
1
plot of H NMR spectra from one of the hydrolysis experiments is
Fig. 1 Increasing concentration of p-nitrophenolate formed as BNPP is broken shown in Fig. 3, with the resonances for GD and PMP labelled (see
ESI† for an analogous 31P NMR plot). The concentrations of the
down under different pH conditions upon the addition of 100 mol%/300 mol%
compound 1 and imidazole respectively with respect to BNPP. The background
different species present were calculated by integrating the 1H and 31
P
rate of BNPP breakdown under these pH conditions was also monitored.
Residual R2 values for the individual fits r1%. The background is taken
from an average of two experiments. Individual fits and calculations can be
found in the ESI.†
NMR spectra and relating these to the starting concentration of GD.
The percentage breakdown of GD far exceeds the rate of
BNPP breakdown under similar conditions. This is in part due
6218 | Chem. Commun., 2014, 50, 6217--6220
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Fig. 5 Change in chemical shift of amide NH from compound 3 with the
addition of PMP/DMMP (E/’).
Fig. 3 1H NMR stack plot of the breakdown of GD in bis–tris (20 mM)
buffered solutions at pD 6.5 in the presence of 100 mol% of compounds 1.
Time = (a) 0 h (b) 3 h (c) 7 h (d) 12 h and (e) 18 h. rCrown Copyright, Dstl.
to a 1 : 1 binding isotherm. An association between compound 3
and PMP was observed and fitting of the titration data to a 1 : 1
binding model gave a stability constant of 14 Mꢀ1, through the
formation of hydrogen bonds from the amide NH groups to PMP.
No interaction was observed between compound 3 and DMMP.
The higher affinity of compound 3 to PMP is presumably due to
the higher polarity of PMP compared to DMMP and the presence
of an extra hydrogen bond accepting/donating group in PMP.
These observations support the theory that compounds 1–3
are capable of forming host : guest complexes via hydrogen
bonding interactions that may both bind the target organo-
phosphate ester and activate it towards hydrolysis.
to the lower stability of GD vs. BNPP. The experimental data
from the breakdown of GD in the presence of 100 and 50 mol%
compound 1 is shown in Fig. 4. After 16 h there is approxi-
mately half the starting concentration of intact GD present in
the samples that contain 100 mol% compound 1, and with
compound 3 only approximately 5% of the GD present has been
hydrolysed. Although the results are less clear with the addition
of 50 mol% compound 1 it does appear that the rate of GD
breakdown is reduced by decreasing the mol% of compound 1
present. This data has been fitted to linear equations which can
be found along with the relevant R2 values in the ESI.†
The association of dimethyl methylphosphonate (DMMP) and
PMP with compound 3 was explored with the use of 1H NMR
titrations in MeCN-d3. DMMP and PMP have similar structures to
GD. Due to solubility and protonation issues host–guest combina-
tions incorporating compounds 1, 2 and BNPP could not be
explored. The results of these studies are shown in Fig. 5. Binding
constants were calculated using WINEQN MR225 fitting the data
Single point 1H NMR studies were also carried out with
compound 3 and GD in CDCl3 in order to observe any potential
host : guest association. Upon addition of two molar equivalents
of GD to a solution of compound 3 (0.01 M) a downfield shift of
0.014 ppm was observed for the amide NH resonance, evidence
supporting the formation of compound 3:GD complex, and pre-
concentration of GD.
We have shown that compound 1 is capable of enhancing
the rate of GD hydrolysis. These results lead us to suggest that
simple tripodal compounds containing amino acids such as
histidine could be used for NA remediation.
We would like to thank the Defence Science and Technology
Laboratory for funding through the Centre for Defence Enterprise
scheme (JRH). We would also like to thank the ESPRC for a PhD
studentship (DJX). MRS would like to thank Dstl for Research
Scholarship funding. PAG thanks the Royal Society and the Wolfson
Foundation for a Royal Society Wolfson Research Merit Award. The
authors thank Dr James Jones (Dstl) for assistance with NMR.
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