CHEMMEDCHEM
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in terms of structure–activity relationship (SAR) for PLD2 inhibi-
tion as well as in enhancement of physiochemical and DMPK
inhibitors with IC50 values of 440 nm and 320 nm, respectively;
however, both were modestly selective versus PLD1 (7–12-
fold). Benzamide congeners, 6d–f, were uniformly inactive at
both PLD1 and PLD2, while certain benzyl amines proved to
be potent PLD2 inhibitors, such as the 2-fluorobenzyl analogue
[
8–10]
properties.
Further probe optimization efforts were focused
on surveying alternative, non-N-aryl moieties in the triazaspir-
one core (Figure 2) and to evaluate diverse analogues 6. To
6
h, displaying 22-fold selectivity
over PLD1 and a PLD2 IC50 of
05 nm. The most interesting
2
SAR concerned regioisomeric
methylene-linked pyridyl conge-
ners.
In this case, the methylene-
linked 2-pyridyl analogue 6k
was 30-fold selective versus
PLD1, the 3-pyridyl analogue 6l
was >80-fold selective and very
potent (PLD2 IC =360 nm), and
Figure 2. Optimization plan for 3–5 to produce analogues 6 with non-N-aryl diversity to improve activity, physio-
chemical properties and DMPK profile.
50
enable this effort, a synthetic route was devised to access ad-
the 4-pyridyl methyl analogue 6m was 28-fold selective versus
PLD1 (PLD2 IC =850 nm). Thus, the 3-pyridyl methyl would
[
11]
vanced intermediate 11 (Scheme 1).
Beginning with N-
50
benzyl-protected piperidinone 7, a Strecker reaction with am-
be retained in future analogues 12 while surveying alternative
amides (Table 2), employing a variation of the route depicted
in Scheme 1. In this instance, SAR was shallow, with functional-
ized benzamides and heteroaryl amides affording inactive
compounds. However, indole-based amides, 12a–e, were the
exception from this library, though SAR was still shallow. Nota-
bly, 12a, a 2-indolyl amide was a potent PLD2 inhibitor (PLD2
IC =52 nm) with ~69-fold selectivity versus PLD1 (PLD1 IC =
50
50
3,600 nm). The 5-fluoro congener 8b, suffered a moderate loss
in potency (PLD2 IC =120 nm) and selectivity (26-fold), but
50
other substitution patterns were inactive. The N-methyl ana-
logue of 12a, 12c, was uniformly inactive as were aza deriva-
tives, such as 12d. Lastly, the 3-indolyl amide 8e was also
devoid of PLD activity inhibition.
Scheme 1. Preparation of analogues 6. Reagents and conditions: a) 1. NaCN,
NH
SO
mine (DIEA), 0.5 equiv 4-dimethylaminopyridine (DMAP), tetrahydrofuran,
. H , 10% Pd/C, MeOH, RT, 3. tert-butyl (2-bromoethyl)carbamate, K CO
Cl
4
Cl, 7m NH
3
/MeOH, RT, 4 h, 2. H
2
SO
4
, CH
2
Cl
2
, 62%; b) 1. formamide,
H
2
4
, 1758C, 16 h 2. NaBH
4
, MeOH, 25% c) 1. Boc
2
O, N,N-diisopropylethyla-
Since the methylene-linked 3-pyridyl moiety was still opti-
mal, this group was attached to the nitrogen of the triazaspir-
2
2
2
3
,
DMF, RT, 62% over three steps; d) 1. HCl, dioxanes, RT, 2. RCOCl, CH
DIEA, RT, 51–84%.
2
2
,
one and N-pyridyl congeners evaluated. S Ar chemistry afford-
N
ed rapid access to a set of 12 analogues with either a 3-pyridyl
(13) or 3-pyridyl-5-fluoro ring (14), the latter of which to com-
bine the optimal moieties in 3–5 and the 3-pyridyl moiety
(Figure 3). Interestingly, these analogues were all uniformly in-
monia followed by sulfuric acid mediated hydrolysis, delivered
carboxamide 8. Condensation with formamide followed by re-
duction with sodium borohydride provided the triazaspirone
core 9 in 25% yield. Subsequent Boc protection of the secon-
dary amine, deprotection of the primary benzyl amine, and re-
ductive amination with tert-butyl (2-oxoethyl)carbamate fur-
nished the bis-Boc 10 in 62% yield. Finally, global deprotection
with HCl and selective acylation of the primary amine afforded
advanced intermediate 11, with the free secondary amine to
participate in alkylations, reductive aminations, and acylations
to survey non-N-aryl moieties in analogues 6.
From 11, multiple iterative libraries were synthesized (in
total 80 novel analogues) that were evaluated for inhibitory ac-
tivity against PLD1 and PLD2 in our standard cell-based
Figure 3. Direct N-pyridyl analogue libraries 13 and 14 were all uniformly in-
active at both PLD1 and PLD2 (IC50 values >30 mm).
[
2]
assay. In the first iteration, the 2-naphthylamide moiety was
held constant (a preferred group) and alterative N-substituents
were surveyed in analogues 6. Table 1 highlights selected SAR
for this series. Robust SAR was noted. The unsubstituted sec-
ondary amine 6a was inactive, while simple cycloalkyl amides,
such as cyclopropyl 6b and cyclobutyl 7c were potent PLD2
active. Thus, 3-pyridyl analogue 6l, a potent, direct inhibitor of
PLD2 (cellular PLD2 IC =360 nm, exogenous biochemical
50
assay with purified PLD2 IC =8.7 mm) with no measureable
50
activity at PLD1 up to 30 mm (>80-fold selective versus PLD1)
was designated ML395, an Molecular Libraries Probe Produc-
tion Centers Network (MLPCN) probe molecule to be further
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ChemMedChem 2014, 9, 2633 – 2637 2634