S. Nurfazilah Wan Yusop et al.
Steroids 171 (2021) 108832
m, H-12b), 2.112 (1H, td, J = 4.62, 10.32 Hz, H-10), 0.914 (1H, m, H-9),
2.8. Acetylcholinesterase inhibition assay
1
.352 (1H, m, H-8), 2.422 (1H, dt, J = 5.88, 10.02 Hz, H-6a), 2.273 (1H,
m, H-6b), 0.936 (3H, s, CH
MHz, CDCl
, δ, ppm): Table 1.
3
-18), 2.603 (1H, s, H-21). 13C NMR (151
2.8.1. In-vitro anti-acetylcholinesterase activities of biotransformed
products and their precursors
3
Slight modification to Ellman’s developed spectrophotometric
method was used for measurement of AChE inhibiting activity of bio-
transformed compounds. Physostigmine was used as a reference for
AChE inhibitor and measurement of anticholinesterase activity was
2
.6.3. 17
White residue, yield (percentage yield): 7.96 mg (2.65%); HRMS m/
z: [M + H] + at m/z 365.4188, for C22 Na (calcd. 365.2093). UV
MeOH) λmax nm (240). H NMR (600 MHz, CDCl , δ, ppm): 4.159 (1H,
m, H-3), 5.581 (1H, d, J = 4.5 Hz, H-4), 1.363 (1H, m, H-15a), 1.776
1H, m, H-15b), 2.011 (1H, m, H-16a), 2.754 (1H, m, H-16b), 2.036 (1H,
m, H-2a), 2.262 (1H, m, H-2b), 1.406 (1H, m, H-1a), 1.845 (1H, m, H-
α-ethynyl-3β-hydroxy-17β-acetoxyestr-4-ene: (4)
30 3
H O
1
′
(
3
done using 5, 5 -Dithio-bis (2-nitrobenzoic) acid (DTNB). The reference,
physostigmine, and all the test samples were dissolved in a buffer prior
to assay at a stock concentration of 3.125 mM and serial dilution was
(
done accordingly. In brief, 190
μ
L DTNB, 20
μ
L of sample solution, and
1
1
1
b), 1.148 (1H, m, H-7a), 1.961 (1H, m, H-7b), 1.227 (1H, m, H-11a),
.942 (1H, m, H-11b), 1.578 (1H, m, H-12a), 1.803 (1H, m, H-12b),
.729 (1H, m, H-10), 0.815 (1H, m, H-9), 1.286 (1H, m, H-8), 1.703 (1H,
20 L of AChE enzyme solution were added using multichannel auto-
μ
matic pipette) into a 96-well microplate and incubated for 10 min at
◦
37 C. Next, addition of 20
μ
L acetylcholine iodide (substrate) initiated
m, H-6a), 1.889 (1H, m, H-6b), 0.927 (3H, s, CH
3
-18), 2.610 (1H, s, H-
the reaction. The reaction of thiocholines and DTNB catalysed by en-
zymes gave rise to the formation of the yellow 5-thio-2-nitrobenzoate,
which signifies the degree of hydrolysis of acetylcholine iodide. The
degree of hydrolysis of acetylcholine iodide was measured using a
microplate reader SPECTROstar Nano (BMG LABTECH), where the
absorbance was read kinetically for 15 min at 412 nm. Reaction rates for
the samples to the blank were compared in order to measure enzyme
activity of the isolated biotransformed products. GraphPad Prism was
used to determine IC50 values.All the samples were tested in triplicates,
and the results were expressed as mean ± SEM.
2
1), 2.064 (3H, s, CH
3
-25). 13C NMR (151 MHz, CDCl
3
, δ, ppm): Table 1.
2
.7. Anti-proliferative study of biotransformed products against human
neuroblastoma cells (SH-SY5Y cell line)
Anti-proliferative activity of biotransformed metabolites were eval-
uated against SH-SY5Y cells (human neuroblastoma cells) by using the
MTT (3-(4, 5-dimethyl thiazol-2yl)-2, 5-diphenyl tetrazolium bromide)
assay. SH-SY5Y cells were maintained in Nacalai Tesque Minimal
essential medium (MEM) containing 4-(2-hydroxyethyl)-1-piper-
azineethanesulfonic acid (HEPES) supplemented with F-12 K nutrient
mixture, 10% (v/v) foetal bovine serum, and 1% pen-
Percentage inhibition (%) =
Absorbanceofcontrol ꢀ Absorbanceoftestsam ple
× 100%
Absorbanceofcontrol
◦
icillin–streptomycin in T175 flasks. The cells were kept at 37 C in hu-
midified 5% CO incubator and they were passaged every three days.
2
2
.8.2. In-silico studies of acetylcholinesterase inhibition
Cells were introduced into 96-well plates at a concentration of 25 000
cells/well and incubated for 24 h. After 24 h, medium was removed, and
cells were treated for 24 h with various concentrations of the bio-
transformed compounds (3.906, 7.813, 15.625, 31.250, 62.5, 125, 250
and 500 µM). Twenty-four hours later, 20 µL of MTT solution (5 mg
dissolved in 1 mL PBS) was added into each well including controls and
The crystal structure of recombinant human AChE (PDB ID: 4EY7)
was obtained from the Research Collaboratory for Structural Bioinfor-
matics (RCSB) Protein Data Bank. The structure contained a known co-
crystallized inhibitor Donepezil. The 3D structure of recombinant
human AChE (rhAChE) was prepared using BIOVIA Discovery Studio
Visualizer Version 17.2.0.16349. The preparation of the structure in-
cludes the process of deletion of ligand, removal of all water molecules,
addition of the missing hydrogen atoms, and minimisation of energy.
Validation of the docking protocol was performed in order to ensure its
reliability for later analysis of the studied compounds. Donepezil was
extracted from the co-crystal ligand from the PDB file and later re-
docked to the co-crystal recombinant human AChE protein. The
computation was performed for the root mean squared deviation
◦
incubated for another 4 h at 37 C. Next, 100 µL dimethyl sulfoxide
(
DMSO) was added to each well to dissolve resultant formazan crystals.
Reduction of MTT to formazan crystals by mitochondrial dehydrogenase
which is present in viable cells was visualized by the development of
blue formazan product. The absorbance was read at 570 nm with a
microplate reader SPECTROstar Nano (BMG LABTECH). Cisplatin was
used as positive control for human neuroblastoma cells, whereas DMSO
was added in the negative control instead of compounds (Table 2).
Cell proliferation inhibition (%) = 100-{(As-Ab)/ (Ac-Ab)} x100
Where,
(
RMSD) of the atomic position between the original orientation of the
co-crystal ligand and the re-docked ligand. The value is deemed
acceptable if the RMSD value is less than or equal to 2.0. The ligands
As = Absorbance value of sample compound
(
two most potent biotransformed compounds) were prepared using
ChemDraw Ultra Version 12.0.2.1076 and ChemDraw 3D Pro Version
2.0.2.1076. Grid box was prepared to maintain coverage of the active
Ab = Absorbance value of blank
Ac = Absorbance value of control
1
site of a recombinant human with a dimension of 50X50X50 Å (X, Y, and
Z axes of 10.634, ꢀ 56.163, ꢀ 23.873, respectively. Molecular docking
was consequently performed using AutoDock 4.2 using refined protein
and ligands. Finally, AutoDock 4.2 was run continually to get best 150
different docked conformational poses against a target molecule. The
parameters such as inhibition constant, binding energy and intermo-
lecular energy for the two most potent biotransformed products were
studied. The three-dimensional structure of protein–ligand interaction
was created and visualised using BIOVIA Discovery Studio Visualizer
Version 17.2.0.16349.
Table 2
In-vitro anti-proliferative activities of ED, and its metab-
olites against human neuroblastoma cell line, SH-SY5Y.
Compound
IC50 (µM)
1
2
3
4
103.30 ± 0.03776
104.80 ± 0.07355
169.30 ± 0.07735
206.80 ± 0.03967
0.61 ± 0.09010
3
. Results and discussion
b
Cisplatin
3
.1. Structure elucidation
Results are expressed as IC50 values (µM). IC50 ± S.E.M are
also given. All value is the mean of three replications.
33 3
Microbial transformation of ethynodiol diacetate (C24H O ) (1)
b
Control used in the assays.
3