Angewandte
Communications
Chemie
How to cite: Angew. Chem. Int. Ed. 2021, 60, 11196–11200
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Protein Regulation
Hot Paper
AGeneral Supramolecular Approach to Regulate Protein Functions by
Cucurbit[7]uril and Unnatural Amino Acid Recognition
Wenbing Cao, Xuewen Qin, Yong Wang, Zhen Dai, Xianyin Dai, Haoyu Wang, Weimin Xuan,
Abstract: Regulation of specific protein function is of great
importance for both research and therapeutic development.
Many small or large molecules have been developed to control
specific protein function, but there is a lack of a universal
approach to regulate the function of any given protein. We
report a general host–guest molecular recognition approach
involving modification of the protein functional surfaces with
genetically encoded unnatural amino acids bearing guest side
chains that can be specifically recognized by cucurbit[7]uril.
Using two enzymes and a cytokine as models, we showed that
the activity of proteins bearing unnatural amino acid could be
turned off by host molecule binding, which blocked its
functional binding surface. Protein activity can be switched
back by treatment with a competitive guest molecule. Our
approach provides a general tool for reversibly regulating
protein function through molecular recognition and can be
expected to be valuable for studying protein functions.
surface of proteins and inhibit their functions. However, the
aforementioned methods are limited to specific proteins or to
proteins with a specific sequence motif. A universal host–
guest molecular recognition approach for targeting the bind-
ing surface of any protein and thus reversibly regulating its
function, would be highly desirable.
Nearly all naturally occurring proteins are composed of
combinations of the 20 canonical amino acids, and achieving
high-affinity, high-specificity host–guest molecular recogni-
tion on protein surfaces with this limited set of building blocks
is challenging. We hypothesized that this challenge could be
overcome by using genetic code expansion, whereby synthetic
unnatural amino acids can be genetically encoded into
a protein in place of any naturally occurring residue via site-
directed mutagenesis with nonsense codon suppression.[11]
Genetic code expansion has previously been used to precisely
control protein function at the single-residue level by means
of photoregulation[12] or chemical decaging.[13] Despite their
power, however, these methods cannot regulate protein
function in a reversible manner. Although unnatural amino
acid containing azobenzene group provide a reversible layer
for protein function regulation, the design is difficult and may
not be applied to any given protein.[14] We reasoned that site-
specific replacement of residues in proximity to a proteinꢀs
functional surface-such as the substrate entry site for an
enzyme or the receptor binding site for a cytokine-with an
unnatural amino acid bearing a guest side chain would allow
residue-specific recognition by a host molecule and thus
permit reversible, on-demand control of the proteinꢀs func-
tion (Scheme 1).
An ideal unnatural amino acid for this purpose would
closely resemble canonical amino acids, to minimize any
deleterious effects on protein activity after mutation. Aro-
matic residues are natural guests for many host molecules,
and the interaction of these pairs have been well-docu-
mented.[15] Logsdon et al. demonstrated that among a series
of phenylalanine analogs, 4-tert-butyl-l-phenylalanine (tBuF)
and 4-(aminomethyl)-l-phenylalanine (pAMF) (Supporting
Information, Figure S1) are the best guest molecules recog-
nized by CB[7] with high affinity.[15a] CB[7] is one of the most
commonly used host molecules in biological systems with low
cytotoxicity.[4a,b,16] The reported Kd values for binding of
CB[7] to tBuFand pAMFare 0.25 mM and 0.46 mM, indicating
that CB[7] binds these residues 35 and 19 times as selectively
as phenylalanine[15a] and a few hundred to a few thousand
times as selectively as tyrosine and tryptophan.[17]
P
roteins are key regulators of biological processes, and
molecules that precisely control protein functions are of great
importance for protein functional studies. Molecular recog-
nition based on host–guest chemistry resembles protein-based
recognition, such as antibody–antigen and biotin–streptavidin
binding, and has already been used for protein modification,
regulation, and assembly.[1] For example, Finbloom et al. used
cucurbit[6]uril-catalyzed click chemistry to site-specifically
modify proteins and synthesize protein conjugates.[2] In
addition, cucurbit[7]uril (CB[7]) and PEG-modified CB[7]
can recognize N-terminal phenylalanine residues of target
proteins, thus inhibiting their function[3] and enhancing their
pharmacokinetic properties.[4] Cucurbit[8]uril can recognize
of proteins with N-terminaL l-phenylalanylglycylglycine
(FGG) motifs and methionine-terminated peptides,[5] and
this behavior has been used to regulate protein dimeriza-
tion,[6] oligomerization,[7] and ordered assembly.[8] Modified
calixarenes[9] and molecular tweezers[10] can recognize the
[*] W. Cao, Z. Dai, X. Dai, Prof. W. Xuan, Prof. Y. Zhang, Prof. Y. Liu
College of Chemistry, State Key Laboratory of Elemento-Organic
Chemistry, Nankai University
94 Weijin Road, Nankai District, Tianjin 300071 (P. R. China)
W. Cao, X. Qin, Y. Wang, Z. Dai, H. Wang, Prof. T. Liu
State Key Laboratory of Natural and Biomimetic Drugs, Department
of Molecular and Cellular Pharmacology, Pharmaceutical Sciences
Peking University
38 Xueyuan Road, Haidian District, Beijing 100191 (China)
E-mail: taoliupku@pku.edu.cn
To genetically incorporate tBuF and pAMF into proteins,
we utilized two previously reported Methanococcus janna-
schii TyrRS tRNACUA pairs.[18] Nonsense codon suppression
Supporting information and the ORCID identification number(s) for
the author(s) of this article can be found under:
11196
ꢀ 2021 Wiley-VCH GmbH
Angew. Chem. Int. Ed. 2021, 60, 11196 –11200