Analytical Chemistry
Article
trypsin was discarded and 1 mL of high-glucose DMEM was
added to each well. Subsequently, the hepatocytes were
centrifuged for 5 min at 1000 rpm and the medium discarded.
Then the hepatocytes were resuspended in 2 mL of PBS and
once more centrifuged for 5 min at 1000 rpm. Afterward, every
pellet was nurtured with Annexin V-FITC binding buffer (195
μL), Annexin V-FITC (5 μL), and propidium iodide (PI) (10
μL) in the dark at room temperature for 20 min. When the
incubation operation was completed, the hepatocytes were
centrifuged for 5 min at 1000 rpm and resuspended in PBS
(200 μL). Lastly, the hepatocytes were subjected to flow
cytometry. The fluorescence signals within the two channels of
FITC and PI were surveyed for 5000 cells on an Image-
StreamX Mark II flow cytometer (Merck). The data was
analyzed by IDEAS software version 6.2.
DNA transiently, which is beneficial for pick up the real-time
information hinted at by DNA changes. Furthermore, the
probe used for biological imaging should not add toxicity or
side effects to the cells. Hence, the cytotoxicity assays were
executed by MTT analysis (Figure S5). The IC50 of mtDNA-
BP is 38.02 mM. It indicates that mtDNA-BP is a qualified
imaging reagent with high velocity and safety.
Binding DNA Properties of mtDNA-BP. Studying the
ability of mtDNA-BP to bind to DNA can provide a basis for
their application in complex life units. Hence, we explored in
detail the binding mode and ability of mtDNA-BP to DNA by
SYBR Green I displacement assay.26,27 SYBR Green I is a
commercial DNA binding dye that indicates the degree of
binding to DNA by changes in its fluorescence intensity.
According to the Figure S6, when the SYBR Green I
encountered the DNA, it exhibited intense fluorescence
emission at 520 nm. Then the fluorescence intensity of
SYBR Green I decreased with the addition of mtDNA-BP, and
the fluorescence intensity decreased linearly with the increase
of the probe concentrations. This indicated that SYBR Green I
was extruded from the DNA groove by mtDNA-BP, and also
suggested that the mtDNA-BP could embed in the DNA
groove and had stronger binding ability to the DNA groove. In
addition, we calculated the binding constants of mtDNA-BP to
DNA based on the following equation (1)28 and binding
constant K = 46773.51 L·mol−1 (Figure S7). Overall, the
mtDNA-BP could be embedded in DNA grooves and have
strong interactions with DNA.
RESULTS AND DISCUSSION
■
Properties of mtDNA-BP. We exploited the mtDNA-BP
spectral property responding to DNA by using UV−vis and
fluorescence spectra in a simulated physiological environment.
As illustrated in Figure S1, upon addition of 120 μg/mL DNA,
the maximum absorption wavelength appeared at 520 nm.
Around the maximum fluorescence emission peak at 580 nm,
the mtDNA-BP fluorescence intensity increased obviously with
the addition of DNA while decreasing significantly with various
DNase treatments (Figure 3). Furthermore, the fluorescence
intensity enhanced linearly with the DNA concentrations rising
(Figure S2). The linear range of DNA detection was 0−120
μg/mL and the limit of detection was 0.2331 μg/mL. These
data prove that mtDNA-BP has a superior ability to detect
DNA.
log[(F − F)/F] = log K + n log[Q ]
(1)
0
where F0 and F are the fluorescence intensity without and with
mtDNA-BP.
A high concentration of reactive oxygen species (ROS) and
reactive nitrogen species exist in mitochondria, and there are
amounts of metal ions in the path of mtDNA-BP entering
mitochondria. All the disruptors may interfere with the
fluorescence response of the probe, so the selectivity of
mtDNA-BP should be investigated efficiently. Figure 4A shows
that there were no significant fluorescence changes of mtDNA-
BP toward intracellular active species except for DNA. It
indicates that mtDNA-BP could detect DNA in cells
exclusively. In addition, to further validate the mtDNA-BP
specificity to DNA in a more realistic life environment, we
performed a complete extraction of the mitochondria within
the hepatocytes. In the mitochondrial internal fluid containing
DNA, whether the mtDNA-BP is affected by other factors was
investigated. As shown in Figure S3, the mtDNA-BP
fluorescent in the authentic mitochondrial environment was
not disturbed by ROS, metal ions, amino acids, and RNA. The
coexistence interference experiment was consistent with the
selectivity experiment in Figure 4A, further illustrating the
distinctive response of the probe for DNA in a complex living
environment. Besides, in view of the unbalanced distribution of
[H+] in the subcellular region, the influence of pH fluctuations
has been estimated. As shown in Figure 4B, the fluorescence
signal of mtDNA-BP was varied imperceptibly in the
physiological pH range 4.0−9.0. The experimental results
show that mtDNA-BP has the potential to perform intra-
cellular imaging without being disturbed by the intracellular
microenvironment.
Mitochondrial Localization of mtDNA-BP. We ex-
ploited the distribution of mtDNA-BP in living cells.29−31
Interestingly, mtDNA-BP prominently accumulated in mito-
chondria relying on the positive charge of the pyridine group.
We employed the mitochondrial commercial dyes (Mito-
Tracker Deep Red, Invitrogen, red channel) to co-stain with
mtDNA-BP (green channel). As shown in Figure 5, all of the
green fluorescence overlaid with the partly red color to exhibit
yellow. Moreover, the distribution of green fluorescence was
characterized by discrete points. This indicates that the probes
could target specific regions within the mitochondria.
Furthermore, we investigated whether mtDNA-BP could
recognize mtDNA. Figure S8 showed that the fluorescence
intensity of mtDNA-BP was significantly enhanced with the
addition of mtDNA and the fluorescence intensity was reduced
with Hind III (mtDNA digested enzyme) pretreated living
cells. These data imply that mtDNA-BP could specifically
image mtDNA in hepatic cells.
Real-Time Fluorescence Imaging of mtDNA-BP in IR
Injury. Mitochondrial DNA plays a significant role in
maintaining normal liver function by participating in the
oxidative phosphorylation process for the supply of energy.
The balance of the energy in the mitochondria is an important
factor to resist IR damage. There seems to be a close link
between mtDNA and IR injury. However, current research has
not been able to determine the definite relationship. So, we
tried to understand the communication between IR damage
and mtDNA with the help of mtDNA-BP. The mtDNA
fluctuations in the IR process were visualized in real time. As
shown in Figure 6, with the time course of IR injury, the
mtDNA-BP fluorescence intensity was gradually decreased for
The faster the probe responds to the object, the easier it is to
capture rapidly changing information about the active
molecule. So, the DNA response rate of mtDNA-BP was
explored. As shown in Figure S4, mtDNA-BP could recognize
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Anal. Chem. 2021, 93, 5782−5788