Journal of Medicinal Chemistry
Article
1
,2-O-Isopropylidene-D-ribofuranose (3). To a solution of 3.05
(ddd, J = 5.7, 5.7, 5.7 Hz, 1H), 4.15 (ddd, J = 4.8, 4.8, 4.8 Hz, 1H),
4.12 (s, 1H), 3.94 (septet, J = 6.0 Hz, 1H), 3.66 (dd, J = 11.4, 4.9 Hz,
1H), 3.65 (dd, J = 11.6, 5.7 Hz, 1H), 2.54 (d, J = 3.6 Hz, 1H), 1.14 (d,
J = 6.3 Hz 3H), 1.12 (s, J = 6.3 Hz 3H). 13C NMR (125 MHz, CDCl3)
δ 148.0, 147.8, 145.9, 144.8, 128.1, 127.9, 124.1, 124.0, 105.9, 80.8,
g (9.6 mmol) of 1,2,3,5-tetra-O-acetyl-β-D-ribofuranose (2) in 30 mL
of dry (4 Å molecular sieves for 10 h) acetone was added 0.6 g (2.4
mmol) of elemental iodine, and the reaction was stirred under argon at
room temperature for 4 h. Dichloromethane (100 mL) was added, and
the reaction was washed with NaHCO (20 mL of sat. aq solution)
followed by Na S O (20 mL of 10% aq solution). The aqueous
+
80.2, 77.6, 74.0, 72.9, 72.4, 71.7, 69.9, 23.8, 21.7. MS (TOF ES ) m/z
3
+
calcd C H N O [M + NH ], 480.19820; found, 480.19355.
2
2
3
22 30
3
9
4
fractions were extracted with 2 × 30 mL of dichloromethane. The
combined organic fractions were washed with 50 mL of brine, dried
with Na SO , and the solvent was removed via rotary evaporation. The
Isopropyl 3,5-Di-O-(4-nitrobenzyl)-β-D-arabinofuranoside
(7). To a solution of oxalyl dichloride (1.07 mL, 12.5) in 20 mL of
dichloromethane was added dropwise a solution of DMSO (1.73 mL,
24.3 mmol) in 5 mL of dichloromethane at −78 °C. After the mixture
was stirred for 15 min, a solution of the ribofuranoside (6) (1.9 g, 4.1
mmol) in 25 mL of dichloromethane was added. After the mixture was
2
4
vacuum-dried crude material was dissolved in 30 mL of dry MeOH,
and 0.4 g of NaOMe was added to the solution. The reaction was
stirred for 30 min at 50 °C. Once TLC (4% MeOH in CH Cl )
2
2
showed a single spot with R = 0.34, Amberlyst-15 resin was added to
stirred at −78 °C for 40 min, Et
The solution was warmed to room temperature over 5 min, mixed
with H O (50 mL), and extracted with dichloromethane (50 mL
twice). TLC (EtOAc/hexanes = 1/2) showed one spot with R = 0.26.
The organic phase was dried with Na SO and concentrated. The
crude material was dissolved in 20 mL of EtOH−CH Cl (8:2)
mixture, and NaBH (0.31 g, 8.1 mmol) dissolved in 13 mL of EtOH−
H O (2:1) was added dropwise with stirring at 0 °C. The reaction was
2
3
N (3.4 mL, 24.7 mmol) was added.
f
neutralize the reaction. The resin beads were removed by filtration,
and mother liquor was concentrated via rotary evaporation. Upon
careful removal of solvent, the crude material was sufficiently pure for
use in the next step. Purification by column chromatography on silica
gel eluting with MeOH/CH Cl (0−4% gradient) afforded 1.51 g
2
f
2
4
2
2
2
2
(
83%) of 3 as a clear oil crystallizing with time. The spectroscopic data
4
28
were in agreement with that in the literature.
1
,2-O-Isopropylidene-3,5-di-O-(4-nitrobenzyl)-D-ribofura-
then warmed to ambient temperature over 1 h and quenched with 10%
nose (5). The diol 3 (1.5 g, 7.89 mmol) was coevaporated with 10 mL
AcOH. The mixture was extracted from NaHCO (aq sat. solution 100
3
of toluene and mixed with 10 g (43 mmol) of Ag O and 10 g of
mL) with 2 × 100 mL of dichloromethane. The combined organic
layer was washed with 2 × 100 mL of water and then dried over
Na SO . The solvent was removed under vacuum. TLC displayed
2
activated 4 Å molecular sieves (150 °C for 3 d). The solids were
suspended in dry dichloromethane (80 mL) and stirred for 1 h. Then
2
4
6.5 g (28 mmol) of 4-nitrobenzyl bromide was added in one portion
compound 7 with R = 0.21 (EtOAc/hexanes = 1/2) and a hardly
f
and the reaction was stirred at 40 °C under argon for 20 h. The
reaction was filtered through Celite, rinsed with 3 × 15 mL of
dichloromethane and the solvent dried in vacuo. Silica gel column
chromatography using EtOAc/hexanes (15−35% gradient) provided
visible spot of compound 6 with R = 0.18, HPLC t = 6.61. Column
f
R
chromatography of the residue on silica gel (30−40% of EtOAc in
1
hexanes) afforded 1.64 g (87%) of 7: H NMR (500 MHz, CDCl ) δ
3
8.21 (d, J = 8.8, 2H), 8.19 (d, J = 8.8 Hz, 2H), 7.51 (d, J = 8.8 Hz,
2H), 7.50 (d, J = 8.8 Hz, 2H), 5.11 (d, J = 4.9 Hz, 1H), 4.92 (d, J =
13.3 Hz, 1H), 4.76 (d, J = 13.3 Hz, 1H), 4.67 (s, 2H), 4.27 (ddd, J =
9.4, 6.1, 4.9 Hz, 1H), 4.17 (ddd, J = 5.8, 5.8, 5.7 Hz, 1H), 4.01 (septet,
J = 6.2 Hz, 1H), 3.87 (dd, J = 5.9, 5.9 Hz, 1H), 3.65 (d, J = 5.8 Hz,
2H), 2.64 (d, J = 9.4 Hz, 1H), 1.19 (d, J = 6.0 Hz, 3H), 1.18 (d, J = 6.0
3
.2 g (87%) of pure compound 5 (R = 0.28, 35% of EtOAc in hexanes,
f
1
HPLC t = 6.20 min). 5: H NMR (500 MHz, CDCl ) δ 8.19 (dd, J =
R
3
8
(
1
(
.5 Hz, 2H), 8.18 (d, J = 8.5 Hz, 2H), 7.53 (d, J = 8.5 Hz, 2H), 7.46
d, J = 8.5 Hz, 2H), 5.82 (d, J = 3.5 Hz, 1H), 4.88 (d, J = 13.0 Hz,
H), 4.70−4.63 (m, 4H), 4.25 (ddd, J = 9.0, 4.0, 2.0 Hz, 1H), 3.89
dd, J = 9.0, 4.5 Hz, 1H), 3.86 (dd, J = 11.5, 2.0 Hz, 1H), 3.71 (dd, J =
Hz, 3H). 13C NMR (125 MHz, CDCl ) δ 147.8 (2C), 145.9 (2C),
3
13
11.5, 4.5 Hz, 1H), 1.60 (s, 3H), 1.38 (s, 3H). C NMR (125 MHz,
128.1, 128.0, 124.0 (2C), 100.4, 85.8, 80.5, 77.9, 73.1, 72.4, 71.5, 70.8,
+
+
CDCl ) δ 147.9, 147.7, 145.9, 145.4, 128.3, 127.9, 124.0, 123.9, 113.5,
23.9, 22.2. MS (TOF ES ) m/z calcd C H N O [M + NH ],
3
22 30 3 9 4
+
1
04.6, 78.5, 78.2, 77.2, 72.6, 71.2, 69.2, 27.0, 26.9. MS (TOF ES ) m/z
calcd C H N O [M + NH ], 478.18255; found, 478.17804.
480.19820; found, 480.19401.
+
22
28
3
9
4
Isopropyl 2-O-(Trifluoromethylsulfonyl)-3,5-di-O-(4-nitro-
benzyl)-β-D-arabinofuranoside (8). To a solution of 0.025 g
(0.054 mmol) of the ribofuranoside (7) and 0.066 mL (0.81 mmol) of
pyridine in 1 mL of dry dichloromethane was added triflic anhydride
(0.11 mL of 1 M solution in dichloromethane) at 0 °C. The reaction
was stirred under argon in an ice bath for 30 min, then quenched with
Isopropyl 3,5-Di-O-(4-nitrobenzyl)-β-D-ribofuranoside (6).
To an ice-cold solution of the acetonide 5 (3.16 g, 6.85 mmol) in a
mixture of acetic acid (36 mL) and acetic anhydride (9 mL), 0.03 mL
(
0.34 mmol) of TfOH was added, and reaction was kept at room
temperature for 3 h. The reaction was carefully neutralized with
NaOH (1 M), and mixture of acetates (EtOAc/hexanes = 1/2: R =
5 mL of a 1:1 mixture of ice and saturated NaHCO solution. The
f
3
0
.27 β-anomer; R = 0.23 α-anomer) was extracted with dichloro-
mixture was extracted with 2 × 10 mL of dichloromethane, the
f
methane (3 × 75 mL). The organic phases were combined and dried
over Na SO , and the solvent was removed via rotary evaporation. The
crude material was dissolved in 15 mL of dry THF. To that solution
were added iodine (0.35 g, 1.39 mmol) and dry isopropanol (2 mL, 27
mmol), and the reaction was refluxed under argon for 8 h. The solvent
was removed by rotary evaporation and the residue dissolved in 100
mL of dichloromethane. The solution was washed with NaHCO (20
mL saturated aqueous solution) followed by Na S O (20 mL of 10%
aqueous solution), and the organic layer was dried over Na SO and
reduced in vacuo. TLC (1% MeOH in CH Cl ) indicated two major
combined organic layer was dried over Na SO and reduced under
2
4
2
4
high vacuum at room temperature. To this was added 5 mL of n-
heptane, and the resulting suspension was coevaporated in high
vacuum at room temperature. The crude triflate (10) was obtained (31
1
mg, 97%) (HPLC t = 5.30). 8: H NMR (300 MHz, CDCl ) δ 8.23
R
3
(d, J = 9.0, Hz, 2H), 8.19 (d, J = 9.0, Hz, 2H), 7.50 (d, J = 8.7 Hz, 2H),
7.43 (d, J = 9.0 Hz, 2H), 5.2 (d, J = 4.5 Hz, 1H), 5.11 (dd, J = 6.3, 4.5
Hz, 1H), 4.73 (s, 2H), 4.67 (s, 2H), 4.37 (dd, J = 6.0, 5.4 Hz, 1H),
4.20 (ddd, J = 6.0, 5.8, 5.4 Hz, 1H), 3.96 (septet, J = 6.3 Hz, 1H), 3.72
(dd, J = 9.9, 4.5 Hz, 1H), 3.67 (dd, J = 9.9, 6.0 Hz, 1H), 1.19 (d, J =
3
2
2
3
2
4
2
2
6.2 Hz, 3H), 1.17 (d, J = 6.2 Hz, 3H). 13C NMR (125 MHz, CDCl ) δ
spots with Rf = 0.54 (isopropyl 2-O-acetyl-3,5-di-O-PNBn-β-D-
ribofuranoside) and 6 with R = 0.12. The crude material was
dissolved in 30 mL of dry MeOH, and 0.2 g of NaOMe was added.
3
f
145.0, 144.3, 134.6, 130.1, 129.0, 128.3, 127.8, 123.8, 98.3, 87.8, 82.4,
+
78.9, 72.3, 72.1, 71.3, 23.4, 21.5. MS (TOF ES ) m/z calcd
+
The reaction was stirred for 30 min at 50 °C. TLC (EtOAc/hexanes =
C H F N O S [M + NH ], 612.14749; found, 612.14259.
23
29
3
3
11
4
1/2) showed one spot with R = 0.18. Amberlyst-15 resin was added to
Isopropyl 2-Deoxy-2-fluoro-3,5-di-O-(4-nitrobenzyl)-β-D-ri-
f
the reaction. The resin beads were removed by filtration, and the
solvent was removed using rotary evaporation. The crude material was
chromatographed on silica gel, eluting with a gradient of 20−40% of
EtOAc in hexanes to afford 2.02 g of 6 (HPLC t = 9.97). 6: H NMR
bofuranoside (9). KF (3 mg, 0.05 mmol) and Kryptofix (19 mg,
0.05 mmol) were azeotropically dried with acetonitrile (3 × 0.3 mL) in
a stream of dry nitrogen at 100 °C. To the obtained KF/K2.2.2
complex, 0.03 g (0.05 mmol) of triflate (8) was added in 0.2 mL of dry
acetonitrile. The reaction vessel was sealed and heated to 154 °C for
1
R
(
300 MHz, CDCl ) δ 8.21 (d, J = 8.7 Hz, 2H), 8.20 (d, J = 8.7 Hz,
3
2
4
H), 7.51 (dd, J = 9.0 Hz, 2H), 7.48 (d, J = 9.0 Hz, 2H), 5.11 (s, 1H),
.78 (d, J = 12.9 Hz, 1H), 4.71 (d, J = 12.9 Hz, 1H), 4.69 (s, 2H), 4.29
30 min. PTLC purification on silica gel with dichloromethane afforded
1
0.014 g (76%) of 9. 9: H NMR (300 MHz, CDCl ) δ 8.21 (d, J = 9.0
3
G
J. Med. Chem. XXXX, XXX, XXX−XXX