V. Van Speybroeck, N. De Kimpe et al.
[25]
an active research domain.
The relatively new metady-
dral angles is displayed in
namics method has particularly attracted our attention. It
was first proposed by Laio and Parrinello and enables an
enhanced sampling of separated regions in phase space, si-
multaneously mapping the underlying free-energy landscape
Figure 4. The Gibbs free energy
barriers for E-to-Z and Z-to-E
isomerization
amount
to
and
À1
(107.1Æ12.1) kJmol
[26]
À1
as a function of a limited number of collective variables.
The particular implementation is based on the work of Ian-
(128.6Æ12.1) kJmol , respec-
[32]
tively. These barriers are
[27]
nuzi et al.
high, preventing isomerization
at the experimental tempera-
ture. The Z-isomer 1 is more
stable than the E-isomer 2 by
Prior to the modeling of the 1-azaallylic anions, we mod-
eled the liquid structure of pure THF by using first-principle
molecular dynamics calculations. The liquid structure of
THF was recently assessed via hydrogen/deuterium isotopic
substitution neutron-diffraction techniques by Bowron,
À1
DGZ–E =(21.5Æ12.1) kJmol ,
which indicates that the experi-
mentally observed Z-isomer 1
is thermodynamically favored.
[28]
Finney, and Soper. A periodic cubic simulation cell was
filled with 64 THF molecules. This choice represents an op-
timal compromise between computational cost and a proper
embedding of the solute in the solvent. The simulation cell
size was chosen to correspond with the experimental density
Within a static cluster approach
using a combined explicit/im- Figure 3. Characteristic snap-
plicit solvent model we were
unable to determine the transi-
shot of the MD simulation of
the Z-isomer 1 (A) and the E-
isomer 2 (B) solvated in THF.
À3 [29]
of 0.88 kgdm . The performance of the THF model was
validated by calculating the radial distribution function
tion state for E/Z isomerization
(
RDF) of the molecular centers, which was found to be in
excellent agreement with the benchmark RDF reported in
reference [28] (see Supporting Information). Moreover, the
MD simulations yielded a conformational distribution of
5
9% twisted and 41% oxygen envelope, indicating a thor-
[28]
ough sampling of the system.
After the THF model had been successfully assessed, it
was applied to study the degree of coordination of the 3-
chloro-1-azaallylic anions in solution. The coordination
number for lithium enolates in ethereal solvents is rather
difficult to establish but four-coordinate lithium cations
have been clearly recognized in NMR studies of solvent sep-
[30]
arated ion pairs. For contact ion pairs, coordination is ex-
pected less important because of the electrostatic effect of
the counter ion. Theoretically the structures of a variety of
organic lithium compounds were determined in the gas
phase and in solvation using microsolvation with explicit
[31]
ethereal ligands and/or continuum models.
For the 1-
azaallylic anions as encountered here which are subject to
large steric crowding, the degree of coordination is not a
priori clear and can not be deduced straightforwardly from
the experimental data. Isothermal–isobaric (NPT) molecular
dynamics simulations during a period of 2.5 ps show that the
Z-isomer 1 is monocoordinated whereas the E-isomer 2 fea-
tures a two-fold coordination with THF (illustrated in
Figure 3). In the E-isomer 2 the halogen–lithium coordina-
tion is not present which allows a second THF molecule to
coordinate with the counter ion.
À1
Figure 4. Gibbs free energy profile (in kJmol ) governing the E–Z iso-
merization of the lithiated 3-chloro-1-azaallylic anion in THF. The posi-
tions of both stable isomers E (2) and Z (1) and the saddle point (E–Z)
are added. Note that the two collective variables feature a 2p periodicity.
°
as the coordination number varies during the chemical
transformation. Moreover, the stability of the Z-isomer 1
with respect to the E-isomer 2 was 20 kJmol too high
À1
In order to obtain insight into the occurrence of only one
stereoisomer in case of 3-chloro-3-methyl-1-azaallylic anions
compared to the metadynamics calculations. By capturing
the movement of both dihedral angles, we were able to ob-
2
3
1
and 2, we decided to construct the free-energy landscape
serve the sp to sp hybridization transition of the C3 carbon
atom upon rotation, a well-known feature of rotations about
allylic bonds. This is reflected in the fact that the saddle
connecting the basins of the two isomers. To this end we ap-
plied the metadynamics method in which the dihedral
angles Cl-C3-C2-N and C4-C3-C2-N were chosen as collec-
tive variables. This choice guarantees the independent
movement of the methyl and chlorine substituents. The re-
sulting free-energy landscape as a function of the two dihe-
°
point, denoted as (E–Z) , does not lie on the linear pathway
connecting both isomers, which confirms a posteriori the im-
portance of capturing the movement of both dihedral
angles.
582
ꢀ 2009 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
Chem. Eur. J. 2009, 15, 580 – 584