Journal of the American Chemical Society
Article
1
7
(
6
(
8%). H NMR (600 MHz, CDCl ): δ 8.32 (1H, d, J = 6 Hz), 7.88
4.29 (1H, s), 3.89 (1H, s), 3.71 (2H, d, J = 12 Hz), 3.06 (6H, s), 2.31
(1H, t, J = 6 Hz), 2.12 (1H, dd, J = 12 and 6 Hz). 1 C NMR (151
3
3
2H, d, J = 12 Hz), 7.85 (2H, d, J = 6 Hz), 7.56 (2H, d, J = 6 Hz),
.76 (2H, d, J = 12 Hz), 6.25 (1H, s), 5.57 (1H, d, J = 12 Hz), 5.52
1H, d, J = 12 Hz), 4.40 (1H, d, J = 6 Hz), 3.98 (1H, d, J = 12 Hz),
.94 (1H, s), 3.79 (1H, d, J = 12 Hz), 3.10 (6H, s), 2.50−2.47 (1H,
m), 2.17−2.12 (1H, m), 0.92 (9H, s), 0.88 (9H, s), 0.13−0.06 (12H,
MHz, DMSO-d ): δ 61.1, 161.0, 152.6, 152.4, 142.6, 136.6, 134.9,
6
129.9, 129.7, 129.3, 129.0, 128.9, 128.8, 125.5, 125.4, 125.0, 124.9,
124.6, 124.4, 122.5, 122.4, 122.1, 121.6, 121.5, 111.6, 87.8, 86.7, 85.7,
3
+
69,6, 69.5, 68.3. ESI-MS calculated for C H FN O m/z [M + Na] :
2
4
26
5
5
13
s). C NMR (151 MHz, CDCl ): δ 161.9, 161.8, 153.2, 153.1, 152.4,
506.1810; found 506.1839.
3
1
1
8
1
43.4, 137.2, 135.7, 135.6, 129.6, 129.4, 128.7, 128.5, 128.1, 127.9,
25.5, 125.4, 124.7, 124.5, 122.8, 122.7, 121.8, 111.32, 87.7(3),
7.6(6), 86.0, 70.0, 69.9, 61.8, 40.6, 39.8, 26.1, 25.9, 25.8, 25.7, 25.5,
8.4, 17.9, −5.2, −5.3, −5.9. ESI-MS calculated for C H FN O Si
Synthesis of 9. To a solution of compound 5 (1.46 g, 2.05 mmol)
in THF (20 mL) was added AcOH (0.26 mL, 4.55 mmol) and TBAF
(1.0 M THF solution, 4.6 mL, 4.60 mmol), and the mixture was
stirred at room temperature for 4 h. The mixture was evaporated, and
3
6
54
5
5
2
+
m/z [M + Na] : 734.3540; found 734.3548.
H O was added to the resulting orange solid. The liquid was filtered
2
Synthesis of 5. To a solution of compound 2 (1.50 g, 2.86 mmol)
and 4-[(4-nitrophenyl)azo]benzyl alcohol (868 mg, 3.38 mmol) in
THF (29 mL) was added DBU (0.65 mL, 4.35 mmol), and the
mixture was stirred at room temperature for 1.5 h. The mixture was
evaporated and extracted with DCM and applied to silica gel column
off, and then, the remaining solid was applied to a silica gel column
(MeOH/DCM= 1/20 (v/v)) to yield compound 9 as an orange solid
1
(645 mg, 65%). H NMR (600 MHz, DMSO-d ): δ 8.57 (1H, d, J = 6
6
Hz), 8.46 (2H, d, J = 6 Hz), 8.11 (2H, d, J = 12 Hz), 8.02 (2H, d, J =
6 Hz), 7.73 (2H, d, J = 6 Hz), 6.09 (1H, t, J = 6 Hz), 5.56 (2H, s),
5.29 (1H, d, J = 6 Hz), 5.22 (1H, t, J = 6 Hz), 4.25 (1H, s), 3.86 (1H,
d, J = 6 Hz), 3.69−3.67 (1H, m), 3.61−3.59 (1H, m), 2.29−2.25 (1H,
(
hexanes/EtOAc = 3/1 to 2/1 to 1/1 (v/v)) to yield compound 5 as
1
an orange solid (482 mg, 24%). H NMR (600 MHz, CDCl ): δ 8.31
3
1
3
(
(
2H, d, J = 6 Hz), 8.29 (1H, d, J = 6 Hz), 7.97 (2H, d, J = 6 Hz), 7.91
2H, d, J = 12 Hz), 7.57 (2H, d, J = 6 Hz), 6.19 (1H, d, J = 6 Hz),
m), 2.11−2.07 (1H, m). C NMR (151 MHz, DMSO-d ): δ 161.8,
6
161.7, 155.9, 153.1, 152.4, 149.4, 140.9, 137.2, 135.6, 130.5, 130.2,
129.5, 125.9, 124.4, 124.1, 123.8, 123.6, 88.7, 86.5, 70.4, 70.3, 68.6,
61.4. ESI-MS calculated for C H FN O m/z [M + Na] : 508.1239;
5
3
0
.53 (2H, t, J = 12 Hz), 4.34 (1H, t, J = 6 Hz), 3.93−3.88 (2H, m),
+
.73 (1H, d, J = 12 Hz), 2.45−2.41 (1H, m), 2.09−2.05 (1H, m),
2
2
20
5
7
1
3
.86 (9H, s), 0.82 (9H, s), 0.07−0.00 (12H, m). C NMR (151
found 508.1211.
MHz, CDCl ): δ 162.2, 162.1, 156.0, 153.6, 152.6, 149.2, 139.8,
Synthesis of 10. To a solution of compound 6 (53 mg, 74.7
μmol) in THF (1 mL) was added TBAF (1.0 M THF solution, 164
μL, 164 μmol), and the mixture was stirred at room temperature for 1
h. The mixture was evaporated and applied to a silica gel column
(MeOH/EtOAc = 1/18 (v/v) and MeOH/DCM = 1/184 (v/v)) to
3
37.6, 136.0, 129.9, 129.6, 129.1, 128.8, 128.6, 125.1, 124.3, 123.7,
8.3, 70.7, 70.6, 68.8, 62.4, 26.3, 26.1, 25.9, 18.8, 18.3, −4.8, −4.9,
+
5.4. ESI-MS calculated for C H FN O Si m/z [M + Na] :
3
4
48
5
7
2
1
Synthesis of 6. To a solution of compound 2 (228 mg, 0.380
yield compound 10 as a yellow solid (32 mg, 89%). H NMR (600
MHz, DMSO-d ): δ 8.36 (1H, d, J = 6 Hz), 7.47 (2H, d, J = 6 Hz),
6
7.42 (2H, d, J = 6 Hz), 7.26 (2H, d, J = 6 Hz), 7.09 (1H, d, J = 12
Hz), 6.94 (1H, d, J = 18 Hz), 6.71 (2H, d, J = 12 Hz), 6.19 (1H, t, J =
6 Hz), 5.30 (1H, s), 5.22 (1H, d, J = 6 H), 4.97 (2H, d, J = 6 H), 4.25
(1H, s), 3.80 (1H, s), 3.63−3.52 (2H, m), 2.92 (6H, s), 2.16 (2H, d, J
1
3
= 6 Hz). C NMR (151 MHz, DMSO-d ): δ 157.5, 157.3, 150.8,
6
149.9, 139.6, 138.0, 135.6, 129.4, 128.8, 127.9, 127.1, 126.1, 125.7,
113.1, 88.5, 70.8, 70.7. ESI-MS calculated for C H FN O m/z [M
2
6
28
3
5
+
+ H] : 482.2087; found 482.2089.
Hypoxia Activation with Rat Liver Microsomes in Vitro. The
hypoxic condition was prepared by bubbling argon gas into the
reaction solution (0.1 M potassium phosphate buffer, pH 7.4) for 30
min. Rat liver microsomes (140 μg/mL) purchased from BioIVT were
preincubated at 37 °C for 5 min, and then, a 1 μM prodrug containing
1% DMSO as a cosolvent was added. As a cofactor for reductases, 100
μM nicotinamide adenine dinucleotide phosphate (NADPH) was
added at 5 min.
found 732.3663.
Oligonucleotide Synthesis. All modified oligonucleotides were
synthesized using a standard DNA synthesis method. Each
phosphoramidite was dissolved in dry acetonitrile and filtrated to
prepare a 0.1 M solution. Each phosphoramidite solution was reacted
on a DNA synthesizer with 0.25 or 0.5 M 5-ethylthio-1H-tetrazole
solution as an activator for 9 min. Glen UnySupport FC (Glen
Research) was used for the synthesis. For the deprotection of DMTr
protecting group, 3% DCA solution was used instead of 3% TCA
solution. For every sequence, a 5′-end DMTr protecting group was
eliminated on the synthesizer. Synthesized DNA was cleaved from the
support by 28% ammonium solution at room temperature for 5 min.
Immediately after the cleavage, the solution was purified through
NAP-10 or -5 columns (GE Healthcare) to eliminate ammonium
solution. All the products were purified by a reverse-phased HPLC.
Cell Viability Assay. The monolayer cell culture was trypsinized
and counted. To each well of the 96-well plate was 180 μL of the
diluted cell suspension (10 000 cells/mL). After 24 h, when a partial
monolayer was formed, the medium in each well was removed by
aspiration and 180 μL of fresh medium with different compound
concentrations (0.001, 0.01, 0.1, or 1.0 μM) was added to each well.
Synthesis of 7. To a solution of compound 3 (2.22 g, 3.65 mmol)
in THF (37 mL) was added TBAF (1.0 M THF solution, 8.0 mL,
8
.00 mmol), and the mixture was stirred at room temperature for 8 h.
The mixture was evaporated, and H O was added. The liquid was
2
filtered off, and the resultant solid was applied to silica gel column
(
(
MeOH/DCM= 22/1 (v/v)) to yield compound 7 as a white solid
1.20 g, 86%). H NMR (600 MHz, DMSO-d ): δ 8.68 (1H, d, J = 12
1
6
Hz), 8.38 (2H, d, J = 12 Hz), 7.84 (2H, d, J = 12 Hz), 6.18 (1H, t, J =
6
4
2
Hz), 5.68 (2H, s), 5.38 (1H, d, J = 6 Hz), 5.32 (1H, d, J = 6 Hz),
.35 (1H, s), 3.95 (1H, s), 3.79−3.76 (1H, m), 3.72−3.69 (1H, m),
.38−2.34 (1H, m), 2.20−2.16 (1H, m). C NMR (151 MHz,
1
3
DMSO-d ): δ 153.0, 148.1, 144.0, 135.6, 130.2, 129.2, 124.6, 88.7,
6
+
7
4
0.4, 70.3, 68.0. ESI-MS calculated for C H FN O m/z [M + Na] :
04.0870; found 404.0889.
Synthesis of 8. To a solution of compound 4 (780 mg, 1.61
22 20 5 7
mmol) in THF (11 mL) was added TBAF (1.0 M THF solution, 2.5
mL, 2.50 mmol), and the mixture was stirred at room temperature for
2
h. The mixture was evaporated and applied to a silica gel column
(MeOH/EtOAc = 1/18 (v/v)) to yield compound 8 as an orange
1
solid (596 mg, quant). H NMR (600 MHz, DMSO-d ): δ 8.60 (1H,
An hypoxia environment (O concentration of 1%) was generated
6
2
d, J = 6 Hz), 7.83 (4H, d, J = 6 Hz), 7.62 (2H, d, J = 12 Hz), 6.82
with an nBIONIX (Sugiyama-Gen). After 72 h, 20 μL of Prestoblue
(Invitrogen) was added to each well, and the plate was incubated for 1
(2H, d, J = 12 Hz), 6.13 (1H, s), 5.49 (2H, s), 5.35−5.29 (2H, m),
3
345
J. Am. Chem. Soc. 2021, 143, 3340−3347