6
02 Journal of Natural Products, 2005, Vol. 68, No. 4
Notes
Plant Material. The seeds of Arabidopsis thaliana ecotype
(OPDAMe, 5) were determined in comparison to the retention
time (min) of OPDAMe derived from OPDA, purchased from
Cayman Chemical, by methylation with trimethylsilyldiazo-
col-0 (Brassicaceae) were purchased from Lehle Seeds. The
2
seeds were immersed in H O at 4 °C for 2 days before sowing
1
0
on rock wool (rock fiber, NITTOBO, Japan). They were then
cultured under continuous light (24 h, ca. 3800 lux) at 24 °C,
until forming a flower bud.
methane. The cis enantiomers, (9′′′S, 13′′′S)-5 (tR 397 min)
and (9′′′R,13R′′′)-5 (tR 397 min), (9′′′′S,13S′′′′)-5′ (tR 397 min)
and (9′′′′R,13R′′′′)-5′ (t 397 min), were inseparable. The trans
R
Extraction and Isolation. Aerial parts of A. thaliana (100
g) were extracted with MeOH (1 L × 2) and evaporated to
dryness in vacuo at 30 °C. The MeOH extract (3.66 g) was then
enantiomers, (9′′′S,13′′′R)-5 (t 347 min) and (9′′′R,13′′′S)-5 (t
R
R
3
3
50 min), (9′′′′S,13′′′′R)-5′ (t
R
347 min) and (9′′′′R,13′′′′S)-5′ (t
R
50 min) (10:3), were produced from cis forms by enolization.
partitioned between EtOAc (100 mL × 3) and H
The EtOAc-soluble portion (0.9 g) was subjected to a silica gel
column (1.1 × 31 cm, CHCl /MeOH, 19:1 f 1:1). The fraction
eluted with CHCl /MeOH, 1:1, was applied to a C18 Sep-Pak
cartridge (CH CN/H O, 3:1, Waters), and the fraction (10.3 mg)
2
O (100 mL).
1
, 2-Dibenzyl Glycerol (6) Derived from 2 and Chiral
GC Analysis of 6. This derivatization followed the method
3
8
of Uzawa. A solution of 2 (1.2 mg) in dry MeOH (0.1 mL) was
3
treated with NaOMe/MeOH (10 equiv) at room temperature
for 1 h. The reaction mixture was partitioned between hexane
3
2
containing arabidopsides C (1) and D (2) was further separated
by reversed-phase HPLC [Deverosil ODS HG-5 (Nomura
Chemical, φ 1.0 × 25 cm), flow rate 2.5 mL/min; solvent
and H
2
2 2
O, and the H O-soluble portion was concentrated under
N
gas. A solution of the concentrate in dry DMF (1 mL) was
treated with NaH at room temperature for 30 min. Benzyl
bromide (5 µL) was added to the reaction solution, then the
mixture was stirred at room temperature for a further 14 h.
The reaction was quenched by the addition of saturated
3 2
CH CN/H O (11:9); detection UV (222 nm)] to give arabidop-
sides C (1, 1.8 mg, t
The CHCl /MeOH, 19:1, fraction was separated by reversed-
phase HPLC [Deverosil ODS HG-5, flow rate 2.5 mL/min;
R R
22 min) and D (2, 0.4 mg, t 38 min).
3
4
aqueous NH Cl and extracted with EtOAc (5 mL) three times.
3 2
solvent CH CN-H O (4:1); detection UV (222 nm)] to afford
arabidopsides A (3, 4.0 mg, t 10 min) and B (4, 1.8 mg, t 13
R R
The EtOAc extract was concentrated in vacuo. The residual
syrup was subjected to preliminary separation by TLC [benzene/
hexane (10:1) f EtOAc], and a solution of the concentrate in
min).
2
4
Arabidopside C (1): colorless amorphous solid; [R]
30.0° (c 0.69, MeOH); IR (KBr) νmax 3424, 1736, 1714, and
D
1
0% dry HCl/MeOH (600 µL) was heated at 100 °C for 8 h.
The reaction mixture was poured into EtOH and concentrated
under N gas. The reaction mixture (0.19 mg) was subjected
+
1
-
1 1
3
631 cm ; H NMR (600 MHz, CD OD) δ 7.96 (2H, m, H-8′′′,
H-10′′′′), 6.20 (2H, m, H-9′′′, H-11′′′′), 5.45 (4H, m, H-13′′′,
H-14′′′, H-15′′′′, H-16′′′′), 3.10 (2H, m, H-7′′′, H-9′′′′), 2.54 (2H,
m, H-11′′′, H-13′′′′), 2.48 (2H, m, Ha-12′′′, Ha-14′′′′), 2.39 (4H,
2
to chiral-GC analysis. Chiral-GC conditions: column: CP-
cyclodex-â-2,3,6 M-capillary column, Varian; program rate: 40
f 150 °C (at 10 °C/min), 150 °C (450 min), 150 f 200 °C (at
10 °C/min), and 200 °C (60 min). The absolute configuration
of the dibenzyl glycerol were determined by the retention time
(min) of (S)- and (R)-dibenzyl glycerol (S: 373 min, R: 376
min) derived from (S)- and (R)-glycerol acetonide according to
m, H
2
-2′′′, H
-15′′′, H
-3′′′, H -3′′′′), 1.36 (12H, m, H
′′′′, H -6′′′′, H -7′′′′), 1.27 (2H, m, Hb-8′′′, Hb-8′′′′), and 1.02
6H, t, J ) 7.2 Hz, H
CD OD) δ 213.8 (C-10′′′, C-12′′′′), 175.1 (C-1′′′, C-1′′′′), 171.2
C-8′′′, C-10′′′′), 135.7 (C-14′′′, C-16′′′′), 133.1 (C-9′′′, C-11′′′′),
2
-2′′′′), 2.24 (2H, m, Hb-12′′′, Hb-14′′′′), 2.12 (4H,
-17′′′′), 1.83 (2H, m, Ha-8′′′, Ha-8′′′′), 1.64 (4H,
-4′′′, H -5′′′, H -4′′′′, H
m, H
2
2
m, H
2
2
2
2
2
2
-
5
(
2
2
1
3
3 3
-16′′′, H -18′′′′); C NMR (150 MHz,
1
2
3
the procedure of Ashton.
(
Enzymatic Hydrolysis of 1. A solution of 1 (0.6 mg) and
Lipase type XI (0.72 units, Sigma) in the presence of Triton
X-100 (2.5 mg) in boric acid/borax buffer (0.63 mL, pH 7.7)
was stirred at 38 °C for 12 h. The reaction was quenched with
AcOH (0.1 mL), and then EtOH (2 mL) was added to the
reaction mixture. The solvent was removed under reduced
1
3
4
2
26.7 (C-13′′′, C-15′′′′), 51.4 (C-11′′′, C-13′′′′), 48.8 (C-7′′′, C-9′′′′),
6.0 (C-2′′′, C-2′′′′), 35.6 (C-6′′′, C-8′′′′), 31.6 (C-6′′′′), 31.3 (C-
′′′, C-4′′′′), 31.0 (C-7′′′′), 28.9 (C-5′′′, C-5′′′′), 26.8 (C-3′′′, C-3′′′′),
4.5 (C-12′′′, C-14′′′′), 22.8 (C-15′′′, C-17′′′′), and 15.2 (C-16′′′,
1
3
1
C-18′′′′); C and H NMR data for sugars and glycerol moieties,
+
see Table 1; ESIMS (pos.) m/z 959 (M + Na) , HRESIMS (pos.)
m/z 959.4971 (M + Na) , calcd for C51
pressure, and the residue was purified using a silica gel column
+
H
80
O17Na, 959.4979.
9
(
hexane/EtOAc, 1:1) to yield OPDA (7, 0.4 mg, 62%), which
2
2
Arabidopside D (2): colorless amorphous solid; [R]
67.2° (c 0.69, MeOH); IR (KBr) νmax 3424, 1736, 1714, and
D
was identified as OPDA methyl ester derived from the hydro-
lysate with trimethylsilyldiazomethane, using GC analysis.
+
10
-
1 1
1
631 cm ; H NMR (600 MHz, CD
3
OD) δ 7.96 (2H, dd, J )
Bioassay. Ten seeds of cress (Lepidium sativum L.) were
placed on a filter paper (No. 1, Toyo) moistened with 500 µL
of test solution containing 0.01% Triton X-100 (v/v) in a 2.7
cm Petri dish and kept for 40 h at 24 °C in the dark, after
which the lengths of their roots were measured. Seedlings
cultured on the solution containing 0.01% Triton X-100 was
used as controls. Data are represented as mean values with
standard errors of three experiments.
2
.1, 5.8 Hz, H-10′′′, H-10′′′′), 6.21 (2H, dd, J ) 2.1, 5.8 Hz,
H-11′′′, H-11′′′′), 5.45 (4H, m, H-15′′′, H-16′′′, H-15′′′′, H-16′′′′),
.09 (2H, m, H-9′′′, H-9′′′′), 2.54 (2H, m, H-13′′′, H-13′′′′), 2.50
2H, m, Ha-14′′′, Ha-14′′′′), 2.37 (4H, m, H -2′′′, H -2′′′′), 2.24
2H, m, Hb-14′′′, Hb-14′′′′), 2.13 (4H, m, H -17′′′, H -17′′′′), 1.83
2H, m, Ha-8′′′, Ha-8′′′′), 1.65 (4H, m, H -3′′′, H -3′′′′), 1.36 (16H,
-4′′′, H -5′′′, H -6′′′, H -7′′′, H -4′′′′, H -5′′′′, H -6′′′′, H
′′′′), 1.23 (2H, m, Hb-8′′′, Hb-8′′′′) and 1.02 (6H, t, J ) 7.5 Hz,
3
(
(
(
2
2
2
2
2
2
m, H
2
2
2
2
2
2
2
2
-
7
1
3
H
3
-18′′′, H
2′′′, C-12′′′′), 176.8 (C-1′′′, C-1′′′′), 171.2 (C-10′′′, C-10′′′′), 135.7
C-16′′′, C-16′′′′), 134.1 (C-11′′′, C-11′′′′), 126.9 (C-15′′′, C-15′′′′),
3 3
-18′′′′); C NMR (150 MHz, CD OD) δ 215.2 (C-
1
Acknowledgment. We thank Dr. S. Matsuyama (Univer-
sity of Tsukuba) for chiral GC analysis, Banyu Pharmaceutical
Co., Ltd. for measurement of ESIMS, and Daiso Co., Ltd. for
(
4
9.8 (C-13′′′, C-13′′′′), 44.8 (C-9′′′, C-9′′′′), 36.0 (C-2′′′, C-2′′′′),
5.6 (C-8′′′, C-8′′′′), 31.5 (C-6′′′, C-6′′′′), 31.3 (C-4′′′, C-4′′′′), 30.9
3
(
R)- and (S)-glycerol acetonides. This work was partly sup-
(
C-7′′′, C-7′′′′), 29.3 (C-5′′′, C-5′′′′), 26.8 (C-3′′′, C-3′′′′), 24.7 (C-
ported by a Grant-in-Aid for JSPS Research Fellowships for
Young Scientists.
1
4′′′, C-14′′′′), 22.3 (C-17′′′, C-17′′′′) and 15.3 (C-18′′′, C-18′′′′);
13
1
C and H NMR data for sugars and glycerol moieties, see
+
Table 1; ESIMS (pos.) m/z 987 (M + Na) , HRESIMS (pos.)
m/z 987.5285, calcd for C51
80
H O17Na, 987.5293.
References and Notes
Methanolysis of 2 and Chiral GC Analyses of the
Methanolysates. After a solution of 2 (0.1 mg) in 0.6 mol/L
HCl/MeOH (0.1 mL) was stirred at 60 °C for 45 min, the
solvent was removed under reduced pressure. The residue
was partitioned between hexane and 90% MeOH, and the
(1) Hisamatsu, Y.; Goto, N.; Hasegawa, K.; Shigemori, H. Tetrahedron
Lett. 2003, 44, 5553-5556.
(
2) Baertschi, S. W.; Ingram, C. D.; Harris, T. M.; Brash, A. R.
Biochemistry 1988, 27, 18-24.
(3) Weber, H.; Vick, B. A.; Farmer, E. E. Proc. Natl. Acad. Sci. U.S.A.
1997, 94, 10473-10478.
(
7
hexane-soluble materials were used for chiral GC analyses.
4) Hisamatsu, Y.; Hasegawa, K.; Shigemori, H. Recent Res. Dev. Org.
Chem. 2004, 8, 467-476.
5) Hansen, P. E. Prog. NMR Spectrosc. 1981, 14, 175-296.
6) Gunstone, F. D.; Pollard, M. R.; Scrimgeour, C. M.; Vedanayagam,
H. S. Chem. Phys. Lipids 1977, 18, 115-129.
Chiral GC conditions: column: γ-DEX 120 capillary column,
SUPELCO; program rate: 40 f 160 °C (at 10 °C/min), 160 °C
(
(
(
360 min), 160 f 200 °C (at 10 °C/min), and 200 °C (60 min).
The absolute configurations of the methyl ester of OPDA