5
-Alkynyl Analogs of Arabinouridine and 2′-Deoxyuridine
Journal of Medicinal Chemistry, 2007, Vol. 50, No. 12 2855
Conclusions
1H, J ) 4.4, 3.9 Hz, H-3′), 3.73 (br q, J ) 5.4, 4.4 Hz, 1H, H-4′),
3.59 (br m, 2H, H-5′).
A group of 5-alkynyl analogs of arabinouridine and 2′-
deoxyuridine were synthesized to evaluate their ability to inhibit
viral infection and their potential application for imaging/
monitoring viral gene thymidine kinase expression in the gene
therapy of cancer. In vitro SARs indicate that (i) high cellular
toxicity is a deterrent to the potential use of the highly potent
1
-(2,3,5-Tri-O-acetyl-â-D-arabinofuranosyl)-5-(2-iodoethynyl)-
uracil (4, IEAU-TA). AgNO (15 mg, 0.086 mmol) and N-
3
iodosuccinimide (136 mg, 0.60 mmol) were added to a solution of
TMSEAU-TA (200 mg, 0.43 mmol) in anhydrous DMF (4 mL).
The reaction flask was covered with aluminum foil and the reaction
was allowed to proceed at 25 °C with stirring for 3 h. The reaction
flask was then immersed in an ice bath, distilled water (15 mL)
was added, and the mixture was stirred for 5 min. This mixture
was extracted with chloroform (4 × 15 mL), the combined
chloroform extracts were washed with brine (3 × 50 mL), and the
5
-alkynyl-2′-deoxyuridines (TMSEDU, EDU) to treat CMV
infection and (ii) the high potency of the 5-trimethylsilylethynyl
analogs of arabinouridine (TMSEAU) against osteosarcoma or
+
+
mammary carcinoma VZVtk and HSV tk gene-transfected
2 4
chloroform fraction was dried (Na S0 ). Removal of the solvent in
-
-
cells, relative to VZVtk or HSV tk cells, suggests that these
precursors may be suitable candidates for radioiodination using
electrophilic radioiodine to prepare the radiopharmaceuticals
I]-IEAU and [ ]-IEDU to monitor viral gene expression
during gene therapy cancer protocols.
vacuo gave IEAU-TA (4), which was recrystallized from MeOH
l
to give yellow crystals (176 mg, 78%), mp 182-183 °C; H NMR
(
3
CDCl ) δ 8.56 (s, 1H, NH), 7.79 (s, 1H, H-6), 6.28 (d, 1H, J )
1
24
124
[
4.5 Hz, H-1′), 5.46 (m, 1H, H-2′), 5.17 (dd, 1H, J ) 4.2, 2.8 Hz,
25
H-3′), 4.44 (dd, J ) 11.2, 4.2 Hz, 1H, H-5′), 4.41 (dd, J ) 11.2,
5
3
.7 Hz, 1H, H-5′′), 4.22 (dd, J ) 9.8, 4.2 Hz, 1H, H-4′), 2.19 (s,
17
H, OAc), 2.17 (s, 3H, OAc), 2.15 (s, 3H, OAc). Anal. (C17H -
Experimental Section
IN
2
O
9
) C, H, N.
General. All chemicals and solvents used in this study were
purchased from Aldrich Chemical. 1-(2,3,5-Tri-O-acetyl-â-D-ara-
binofuranosyl)-5-[2-(trimethylsilyl)ethynyl]uracil (1) was prepared
according to a literature procedure.17 Reactions requiring anhydrous
conditions were performed under an atmosphere of argon. All
solvents were dried by standard methods26 and distilled just prior
to use or were purchased as anhydrous solvents in Sure-Sealed
bottles. Tetrahydrofuran was dried over sodium and benzophenone.
Dichloromethane, triethylamine, and acetonitrile were dried over
calcium hydride. Melting points were determined with a Thomas-
Hoover capillary apparatus. Flash column chromatography was
performed on silica gel 60 (E. Merck, 230-400 mesh). All columns
were dry packed and eluted using positive air pressure, as
1
-(2-Deoxy-â-D-ribofuranosyl)-5-[2-(trimethylsilyl)ethynyl]u-
racil (6, TMSEDU). 5-Iodo-2′-deoxyuridine (5, 1.0 g, 2.82 mmol)
was dissolved in MeCN/Et N (66 mL of 1:1, v/v) under an argon
atmosphere. Trimethylsilylacetylene (1.6 mL, 11.3 mmol), bis-
triphenylphosphine)palladium(II) chloride (42.2 mg, 0.60 mmol),
and CuI (28 mg, 0.15 mmol) were added, a condenser was fitted
to the flask, and the reaction flask was immersed into a preheated
oil bath (50 °C). The reaction was allowed to proceed for 3.5 h,
and the solvents were removed in vacuo to give a residue that was
purified by silica gel flash column chromatography. Elution with
3
(
CHCl
0.73 g, 79%), mp 63-64 °C; H NMR (MeOH-d
H-6), 6.21 (dd, J ) 4.5, 4.5 Hz, 1H, H-1′), 4.38 (ddd, J ) 5.5, 4.2,
.9 Hz, 1H, H-3′), 3.92 (dd, J ) 4.7, 3.1 Hz, 1H, H-4′), 3.81 (dd,
J ) 10.9, 3.1 Hz, 1H, H-5′), 3.72 (dd, J ) 12.8, 3.7 Hz, 1H, H-5′′),
.28 (m, 2H, H-2′), 0.19 [s, 1H, Si(CH ]; Exact mass (HRMS)
calcd for C14 Si, 324.1141; found, 324.1134. Anal.
Si) C, H, N.
-(2-Deoxy-â-D-ribofuranosyl)-5-ethynyluracil (7, EDU). A
3
/MeOH (9:1, v/v) afforded TMSEDU as a beige solid
1
(
4
) δ 8.52 (s, 1H,
27
recommended by Still et al. A Bruker AM-300 NMR spectrometer
3
1
was used to acquire H NMR spectra with TMS as internal standard.
Coupling constant (J) values are estimated in hertz (Hz), and spin
multiples are given as s (singlet), d (doublet), t (triplet), q (quartet),
m (multiplet), and br (broad). Microanalyses determined for C, H,
and N were within (0.4% of theoretical values.
2
3 3
)
20 2 5
H N O
14 20 2 5
(C H N O
1
1
-(â-D-Arabinofuranosyl)-5-[2-(trimethylsilyl)ethynyl]uracil
2, TMSEAU). In an argon purged flask, TMSEAU-TA (1,
.27 g, 0.58 mmol) was dissolved in anhydrous MeOH (5 mL). A
solution of NaOMe in MeOH (33 mL of 0.05 N) was added to a
solution of TMSEDU (6, 159 mg, 0.34 mmol) in anhydrous MeOH
(4 mL) under an argon atmosphere, and the reaction was allowed
to proceed with stirring at 25 °C for 2 h. The pH of the solution
was adjusted to pH 5-6 using prewashed Amberlite IR-120 acidic
resin, and the mixture was filtered through a Celite pad. Removal
of the solvent from the filtrate in vacuo furnished a residue that
was purified by silica gel column flash chromatography using
3
(
0
solution of 0.05 N NaOMe in MeOH (46 mL) was added, and the
reaction was allowed to proceed with stirring at 25 °C for 1 h. The
pH of the solution was adjusted to pH 5-6 using prewashed
Amberlite IR-120 acidic resin, and the mixture was filtered through
a Celite pad. Removal of the solvent from the filtrate in vacuo
furnished a residue that was purified by silica gel flash column
CHCl /MeOH (4:1, v/v) as eluent to yield EDU (7) as a white
9
chromatography using CHCl
3
/MeOH (4:1, v/v) as eluent to afford
crystalline solid (80 mg, 87%), mp 178-180 °C (dec) [lit
175 °C]; H NMR (DMSO-d ) δ 11.60 (s, 1H, NH), 8.30 (s, 1H,
H-6), 6.11 (dd, J ) 3.6, 3.6 Hz, 1H, H-1′), 5.28 (d, J ) 4.5 Hz,
1H, C-3′ OH), 5.16 (t, J ) 4.5 Hz, 1H, C-5′ OH), 4.24 (m, 1H,
H-3′), 4.12 (s, 1H, acetylene proton), 3.79 (m, 1H, H-4′), 3.58 (m,
2H, H-5′), 2.10 (m, 2H, H-2′).
1
TMSEAU (2; 114 mg, 81%) as a white crystalline solid, mp 115-
6
1
1
18 °C; H NMR (DMSO-d
6
) δ 11.65 (s, 1H, NH), 7.93 (s, 1H,
H-6), 5.95 (d, J ) 4.5 Hz, 1H, H-1′), 5.61 (d, J ) 5.0 Hz, 1H, C-2′
OH), 5.48 (d, J ) 4.5 Hz, 1H, C-3′ OH), 5.12 (t, J ) 5.3 Hz, 1H,
C-5′ OH), 4.00 (br q, J ) 4.4 Hz, 1H, H-2′), 3.90 (br q, J )
3
2
C
.9 Hz, 1H, H-3′), 3.73 (br q, J ) 3.4 Hz, 1H, H-4′), 3.62 (br m,
H, C-5′), 0.18 [s, 9H, -Si(CH ]; Exact mass (HRMS) calcd for
Si, 340.1091; found, 340.1078. Anal. (C14 Si)
1-(2-Deoxy-â-D-ribofuranosyl)-5-(2-iodoethynyl)uracil (8,
IEDU). TMSEDU (6, 1.2 g. 3.70 mmol) was added, under an argon
atmosphere, to the reaction flask containing anhydrous DMF
(24 mL), N-iodosuccinimide (1.17 g, 5.18 mmol), and AgNO3
(130 mg, 0.74 mmol) with stirring. The reaction flask was covered
with aluminum foil, and the reaction was allowed to proceed at
25 °C for 3 h with stirring. The solvent was coevaporated using
toluene (3 × 25 mL), and the crude product was purified by silica
3 3
)
14
H N O
20 2 6
20 2 6
H N O
C, H, N.
-(â-D-Arabinofuranosyl)-5-ethynyluracil (3, EAU). A solution
of TMSEAU (2, 0.27 g, 0.58 mmol) in benzene (6.0 mL) was added
to a solution of K CO (70 mg, 0.63 mmol) in MeOH (12.0 rnL)
with stirring at 25 °C, and the reaction was allowed to proceed for
h. Removal of the solvent in vacuo afforded a residue that was
purified by silica gel column flash chromatography using CHCl
MeOH (4:1, v/v) as eluent to yield EAU (3) as a white solid (0.14
1
2
3
6
3
gel flash column chromatography using CHCl /MeOH (9:1, v/v)
3
/
as eluent. Recrystallization of the eluted product from MeOH-
O afforded IEDU (8, 56 mg, 40%) as a pale yellow solid, mp
140 °C (dec) [lit mp 135-137 °C]; H NMR (MeOH-d ) δ 8.32
4
H
2
9
1
20
1
g, 90%), mp > 230 °C (dec) [lit mp > 250 °C]; H NMR (DMSO-
d
1
1
6
) δ 11.70 (s, 1H, NH), 7.98 (s, 1H, H-6), 5.98 (d, J ) 4.5 Hz,
(s, 1H, H-6), 6.21 (dd, J ) 3.2, 3.2 Hz, 1H, H-1′), 4.38 (ddd, J )
6.5, 5.9, 3.5 Hz, 1H, H-3′), 3.93 (q, J ) 3.5 Hz, 1H, H-4′), 3.81
(dd, J ) 12.0, 3.0 Hz, 1H, H-5′), 3.72 (dd, J ) 12.0, 3.5 Hz, 1H,
H, H-1′), 5.62 (d, J ) 5.3 Hz, 1H, C-2′ OH), 5.48 (d, J ) 4.5 Hz,
H C-3′ OH), 5.14 (t, J ) 5.1 Hz, 1H, C-5′ OH), 4.08 (s, 1H,
acetylene proton), 3.98 (dd, J ) 8.8, 4.5 Hz, 1H, H-2′), 3.90 (br q,
2 5
H-5′′), 2.25 (m, 2H, H-2′). Anal. (Cl1Hl1IN O ) C, H, N.