2
V. Sarmiento et al. / Bioorganic & Medicinal Chemistry Letters xxx (2018) xxx–xxx
Fig. 1. Structures of (A) (ꢀ)-epicatechin (Epi) and its synthetized derivatives; Epi-5-prop (E), Epi-4-prop (D), Epi-Ms. (B) and Epi-prop (C).
such structures. Interestingly, several studies have suggested that
the biological properties of flavonoids are largely dependent on
the availability of ‘‘free” phenol groups on their structure
studies were implemented as previously described (see Supple-
mentary data).
Docking results (Fig. 2) suggest that the interactions between
Epi derivatives and GPER are energetically favorable and that the
2
0
1
4,15
(Fig. 1).
We thus, implemented a rational strategy comprising the fol-
type of interactions generated are via hydrogen and p-p bonding.
lowing steps: 1) synthesis of novel Epi derivatives (which relied
on the introduction of mesyl or propargyl groups) that may be
optimal for the generation of affinity columns and purification of
Epi binding proteins, 2) in silico molecular docking of the novel
Epi derivatives on a previously validated GPER platform, 3)
in vitro analysis of the novel Epi derivatives on NO production
and, 4) implementation of an inmobilized Epi derivative affinity
column to isolate binding Epi proteins from endothelial cell protein
extracts. Flavonoid effects appear to be structure-dependent and a
In general, the interactions of Epi derivatives on the GPER con-
former at 14 ns are similar to those of Epi. In contrast, Epi deriva-
tives docking results on GPER conformer at 70 ns evidenced
different binding modes between Epi derivatives and Epi. In the
1
3
14 ns GPER conformer, Epi (
G = ꢀ7.74 kcal/mol) reach some common aminoacid residues
L137, M141 by hydrophobic interaction whereas under with
F208, F223, W272 there are interactions and with S317 and
D
G = ꢀ7.9 kcal/mol) and Epi-Ms.
(D
p-p
A313 there are hydrogend bonds, Epi-Ms. also interacts with
major determinant factor is the presence of hydroxyl (i.e. phenols
S112 residue via hydrogen bonds.
and alcohol groups) moieties.1
4,15
The esterification and alkylation
Epi-5-prop (
D
G = ꢀ9.2 kcal/mol) reaches the aminoacid resi-
of the hydroxyl groups are commonly used methods used to gen-
erate flavonoid derivatives. Using this strategy, others and we have
synthesized novel flavonoid derivatives by targeting their phenol
dues L108 and L137 by hydrophobic interactions and W272,
F208 and Y142 by interactions and with S112 and Q138 under
hydrogen bonds (Fig. 2 upper panel). Epi-prop shows a
ꢀ8.05 kcal/mol and makes interactions with F278 and hydro-
gen bonds with N310. Epi-4-prop (
G = ꢀ8.68 kcal/mol) reaches
the aminoacid residues Q138, E218, Q215, E275 by hydrogen
bonds; Y142, F208 and F206 by interactions and; R286 by a
-cation interaction.
In contrast, using GPER conformer at 70 ns, docking analyses
DG =
1
6–19
groups.
. In this study, we modified the structure of Epi by tar-
p-p
0
0
geting its phenol (3 ,4 , 5 and 7 position) and alcohol (C-3 position)
groups (Fig. 1A). For the synthesis of the derivatives, native Epi was
used as a starting material. The detailed synthetic procedures used
to obtain each Epi derivative are presented in Supplementary data.
As a first step, we introduced mesyl or propargyl group substitu-
ents in the Epi molecule at the C-3 alcohol group in order to keep
the four phenolic groups available (Fig. 1B and C respectively). We
also alkylated the four phenol groups of Epi, and kept free the 3-
alcohol group (Fig. 1D). Finally, we alkylated the four phenolic
and the alcohol groups of Epi, which led to a molecule with no free
hydroxyl groups (Fig. 1E).
D
p-p
p
demonstrate that Epi derivatives interact with aminoacid residues
distinct than those observed with Epi derivatives at 14 ns (Fig. 1
bottom panel). Epi-Ms. establishes hydrogend bonds with N310,
S62, Q54, E115 and C205 and
p-p interactions with Y123. Epi-5-
prop makes hydrogen bonds with P226, T220 and W150;
interactions with F146, W150 and; hydrophobic interactions with
p-p
The resultant Epi derivatives were 3-O-mesyl-(ꢀ)-epicatechin
L221, V225, F146 and L176. Epi-prop, establishes hydrogen bonds
with S317, D111 and D105; p-p interactions with F268 and W272
and; hydrophobic interactions with L108. Epi-4-prop recognized
Q138 and C207 using hydrogen bonds. Additionally, this Epi
0
(
3
3
Epi-Ms), 5,7,3,4 -tetra-O-propargyl-(ꢀ)-epicatechin (Epi-4-prop),
0
0
,5,7,3 ,4 -penta-O-propargyl-(ꢀ)-epicatechin (Epi-5-prop), and
-O-propargyl-(ꢀ)-epicatechin (Epi-prop).
On the other hand, to ascertain for their possible bioactivity and
derivative established p-p interactions with F208 and Y123 as well
coupling to a known receptor, the novel Epi derivatives were eval-
uated in silico. For this purpose, molecular docking and dynamics
as hydrophobic interactions with L129, V196 and M133. Using
both GPER conformers, docking modeling estimates that Epi-4-