Structure-ActiVity Relationships of Iron Chelators
Journal of Medicinal Chemistry, 2008, Vol. 51, No. 2 341
Food Sciences, University of Queensland). Octanol–water partition
coefficients were measured spectrophotometrically, as described
elsewhere.28
(m), 1581 (m), 1540 (m), 1508 (m), 1465 (w), 1319 (w), 1259 (s),
1015 (m), 903 (w), 845 (m), 757 (m), 701 (m), 616 (m), 579 (w);
1H NMR (d6-DMSO) δ 10.82 (s, 1H, NH), 10.18 (s, 1H, OH),
9.21 (s, 1H, ArH), 8.67 (dd, 1H, ArH), 8.64 (d, 1H, ArH), 7.82 (d,
2H, ArH), 6.90 (d, 2H, ArH), 2.45 (s, 3H, CH3); MS (ESI) m/z
257 (M + H +), 279 (M + Na+). Single crystals suitable for X-ray
analysis were grown by slow evaporation of an ethanol solution.
Methyl Pyrazinylketone p-Aminobenzoyl Hydrazone
(HMPAH). HMPAH (66%) was collected as small white crystals:
Anal. (C13H13N5O) C, H, N; IR (cm-1) 3444 (m), 3352 (m), 3234
(m), 1655 (s), 1603 (s), 1502 (s), 1257 (s), 1195 (w), 1134 (w),
835 (m), 756 (m), 694 (w), 616 (m); 1H NMR (d6-DMSO) δ 10.50
(s, 1H, NH), 9.18 (d, 1H, ArH), 8.62 (dd, 1H, ArH), 8.59 (d, 1H,
ArH), 7.66 (d, 2H, ArH), 6.59 (d, 2H, ArH), 2.40 (s, 3H, CH3);
MS (ESI) m/z 256 (M + H+), 278 (M + Na+).
Elemental analysis (C, H, N) of the ligands and complexes was
performed, and the results, available as Supporting Information,
were within (0.4% of the theoretical values, unless otherwise stated.
Crystallography. Cell constants at 293 K were determined by a
least-squares fit to the setting parameters of 25 independent reflections
measured on an Enraf-Nonius CAD4 four-circle diffractometer em-
ploying graphite-monochromated Mo KR radiation (0.71073 Å) and
operating in the ω-2θ scan mode within the range 2 < 2θ < 50 Å.
Data reduction was performed with the WINGX suite of programs.56
Structures were solved by direct methods with SHELXS and refined
by full-matrix least-squares analysis with SHELXL-97.57 All non-H
atoms were refined with anisotropic thermal parameters. Aryl H-atoms
were included at estimated positions using a riding model. Amide
H-atoms were first located from difference maps then restrained at
these positions in a similar manner to that employed for the remaining
H-atoms. Molecular structure diagrams were produced with
ORTEP3.58 The data in CIF format has been deposited at the
Cambridge Crystallographic Data Centre.
Methyl Pyrazinylketone p-Trifluoromethylbenzoyl Hydra-
zone (HMPTFH). HMPTFH (78%) was collected as thick white
crystals: Anal. (C14H11N4OF3) C, H, N; IR (cm-1) 3336 (s), 3058
(w), 1675 (s), 1580 (m), 1531 (s), 1510 (w), 1467 (m), 1439 (m),
1407 (m), 1367 (m), 1329 (s), 1267 (m), 1011 (m), 903 (m), 863
1
(m), 768 (m), 708 (m), 689 (m), 667 (w), 593 (w), 548 (w); H
Methyl Pyrazinylketone Benzoyl Hydrazone (HMPBH). Equi-
molar amounts of acetyl pyrazine (0.50 g, 4.1 mmol) and benzoic
acid hydrazide (0.56 g, 4.1 mmol) were dissolved in ethanol (70
mL) with stirring. A few drops of concentrated HCl were added as
a catalyst. The reaction solution was refluxed for 5 h and the
crystallized product was collected by vacuum filtration, washed with
cold ethanol, and air-dried. This afforded HMPBH (60%) as long,
pale yellow crystals: Anal. (C13H12N4O) C, H, N; IR (cm-1) 3376
(m), 3046 (w), 1682 (s), 1599 (m), 1578 (m), 1533 (s), 1514 (s),
1490 (m), 1467 (m), 1323 (m), 1253 (s), 1172 (m), 1073 (m), 1015
(m), 903 (m), 841 (m), 801 (m), 710 (s), 686 (s), 656 (m), 579
(w); 1H NMR (d6-DMSO) δ 11.09 (s, 1H, NH), 9.27 (s, 1H, ArH),
8.67 (m, 2H, ArH), 7.90 (d, 2H, ArH), 7.65 – 7.52 (m, 3H, ArH),
2.47 (s, 3H, CH3); MS (ESI) m/z 241 (M + H+), 263 (M + Na+).
Single crystals suitable for X-ray crystallography were grown by
slow evaporation of an ethanol solution. All other members of the
HMPIH series were prepared in a similar manner.
NMR (d6-DMSO) δ 11.32 (s, 1H, NH), 9.30 (s, 1H, ArH), 8.69
(m, 2H, ArH), 8.11 (d, 2H, ArH), 7.92 (d, 2H, ArH), 2.48 (s, 3H,
CH3); MS (ESI) m/z 309 (M + H+). Single crystals suitable for
X-ray analysis were grown by slow evaporation of an ethanol
solution.
Methyl
Pyrazinylketone
p-Nitrobenzoyl
Hydrazone
(HMPNH). HMPNH (77%) was collected as fine yellow needles:
Anal. (C13H12N4O3) C, H, N; IR (cm-1) 3176 (m), 3046 (w), 1666
(s), 1599 (m), 1516 (s), 1458 (w), 1349 (s), 1270 (m), 1150 (w),
1008 (w), 844 (m), 687 (m); 1H NMR (d6-DMSO) δ 11.41 (s, 1H,
NH), 9.29 (s, 1H, ArH), 8.68 (m, 2H, ArH), 8.37 (d, 2H, ArH),
8.16 (d, 2H, ArH), 2.48 (s, 3H, CH3); MS (ESI) m/z 286 (M +
H+), 308 (M + Na+).
Methyl Pyrazinylketone 2-Thiophenecarboxyl Hydrazone
(HMPTH). HMPTH (77%) was collected as fine white needles:
Anal. (C11H10N4OS) C, H, N; IR (cm-1) 3166 (m), 3048 (w), 1645
(s), 1599 (w), 1516 (m), 1420 (w), 1382 (m), 1338 (w), 1300 (w),
1222 (w), 1176 (w), 1122 (w), 1093 (w), 1047 (w), 1031 (w), 1011
(w), 854 (w), 808 (w), 744 (w), 723 (m), 704 (m), 639 (w), 549
Methyl Pyrazinylketone Isonicotinoyl Hydrazone (HMPIH).
HMPIH (73%) was collected as a fibrous white solid: Anal.
(C12H11N5O) C, H, N; IR (cm-1) 3182 (m), 3046 (w), 1669 (s),
1617 (w), 1597 (w), 1554 (w), 1501 (w), 1459 (w), 1418 (w), 1381
(m), 1304 (m), 1225 (w), 1169 (m), 1126 (w), 1099 (w), 1010 (w),
863 (w), 841 (m), 803 (w), 753 (m), 724 (m), 687 (w), 631 (w),
1
(w), 474 (w), 464 (m), 420 (w); H NMR (d6-DMSO) δ 11.22 (s,
1H, NH), 9.36 (s, 1H, ArH), 8.69 (dd, 1H, ArH), 8.66 (d, 1H, ArH),
8.08 (dd, 1H, ArH), 8.00 (d, 1H, ArH), 7.25 (dd, 1H, ArH), 2.45
(s, 3H, CH3); MS (ESI) m/z 269 (M + Na+).
1
585 (w); H NMR (d6-DMSO) δ 11.39 (s, 1H, NH), 9.29 (s, 1H,
2-Pyridylcarboxaldehyde p-Trifluoromethylbenzoyl Hydra-
zone (HPCTFH). Equimolar amounts of 2-pyridylcarboxaldehyde
(0.40 g, 3.7 mmol) and p-trifluoromethylbenzoic acid hydrazide
(0.76 g, 3.7 mmol) were dissolved in ethanol (70 mL) with stirring.
A few drops of concentrated HCl were added as catalyst. The
reaction solution was refluxed for 5 h and the product was collected
by vacuum filtration, washed with cold ethanol, and air-dried.
HPCTFH (54%) was collected as thin white needles: Anal.
(C14H10N3OF3) C, H, N; IR (cm-1) 3165 (m), 3042 (w), 1647 (s),
1583 (w), 1551 (m), 1466 (w), 1437 (w), 1409 (w), 1328 (m), 1302
(w), 1284 (m), 1167 (w), 1146 (w), 1119 (m), 1062 (w), 1018 (w),
992 (w), 953 (w), 919 (w), 857 (w), 775 (w), 749 (w), 687 (w),
618 (w); 1H NMR (d6-DMSO) δ 12.27 (s, 1H, NH), 8.66 (dd, 1H,
ArH), 8.52 (s, 1H, HCdN), 8.16 (d, 2H, ArH), 8.02 (d, 1H, ArH),
7.99 (m, 3H, ArH), 7.47 (ddd, 1H, ArH); MS (ESI) m/z 294 (M +
H+), 316 (M + Na+). All additional HPCIH analogs were prepared
in a similar manner.
ArH), 8.80 (d, 2H, ArH), 8.70 (m, 2H, ArH), 7.84 (d, 2H, ArH),
2.48 (s, 3H, CH3); MS (ESI) m/z 242 (M + H+).
Methyl Pyrazinylketone m-Bromobenzoyl Hydrazone
(HMP3BBH). HMP3BBH (59%) was collected as a fibrous white
solid: Anal. (C13H11N4OBr) C, H, N IR (cm-1) 3191 (m), 1667
(s), 1617 (w), 1560 (w), 1523 (w), 1467 (w), 1364 (m), 1303 (w),
1173 (w), 1157 (w), 1126 (w), 1104 (w), 1067 (w), 1049 (w), 1010
(w), 885 (w), 852 (w), 819 (w), 801 (m), 741 (m), 714 (m), 694
(w), 678 (w), 631 (w); 1H NMR (d6-DMSO) δ 11.20 (s, 1H, NH),
9.28 (s, 1H, ArH), 8.68 (m, 2H, ArH), 8.09 (s, 1H, ArH), 7.91 (d,
1H, ArH), 7.82 (d, 1H, ArH), 7.52 (dd, 1H, ArH), 2.47 (s, 3H,
CH3); MS (ESI) m/z 319 (M + H+), 321 (M + H+), 341 (M +
Na+), 343 (M + Na+).
Methyl Pyrazinylketone p-Bromobenzoyl Hydrazone
(HMP4BBH). HMP4BBH (74%) was collected as yellow needles:
Anal. (C13H11N4OBr) C, H, N; IR (cm-1) 3188 (w), 3074 (w), 2950
(w), 1681 (s), 1582 (m), 1560 (w), 1483 (w), 1460 (m), 1397 (m),
1363 (m), 1302 (m), 1178 (m), 1121 (w), 1091 (w), 1071 (w), 1049
(w), 1011 (m), 848 (m), 806 (w), 772 (w), 741 (m), 710 (w), 647
2-Pyridylcarboxaldehyde
p-Nitrobenzoyl
Hydrazone
(HPCNH). HPCNH (53%) was collected as small yellow crystals:
Anal. (C13H10N4O3) C, H, N; IR (cm-1) 3237 (m), 3062 (w), 3038
(w), 1655 (s), 1599 (m), 1546 (m), 1517 (s), 1462 (w), 1438 (w),
1343 (m), 1321 (m), 1299 (m), 1271 (m), 1149 (w), 1103 (w), 1062
(w), 1044 (w), 1012 (w), 995 (w), 962 (w), 921 (w), 871 (w), 840
(w), 774 (w), 742 (w), 726 (w), 703 (w), 683 (w), 653 (w), 619
1
(w), 565 (w); H NMR (d6-DMSO) δ 11.16 (s, 1H, NH), 9.27 (s,
1H, ArH), 8.68 (m, 2H, ArH), 7.85 (d, 2H, ArH), 7.75 (d, 2H,
ArH), 2.46 (s, 3H, CH3); MS (ESI) m/z 319 (M + H+), 321 (M +
H+), 341 (M + Na+), 343 (M + Na+).
Methyl Pyrazinylketone p-Hydroxybenzoyl Hydrazone
(HMPHH). HMPHH (80%) was collected as small yellow crystals:
Anal. (C13H12N4O2) C, H, N; IR (cm-1) 3296 (m), 1652 (s), 1607
1
(w), 583 (w); H NMR (d6-DMSO) δ 12.32 (s, 1H, NH), 8.66 (d,
1H, ArH), 8.51 (s, 1H, HCdN), 8.40 (d, 2H, ArH), 8.19 (d, 2H,