80
Q. Xu et al. / European Journal of Medicinal Chemistry 52 (2012) 70e81
5.42 mmol) in pyridine (16 mL) and piperidine (0.25 mL) was stirred
at 100 ꢀC for 12 h. After cooling to room temperature, the solution
was added water (16 mL) and acidified with 6 N HCl while the
precipitate produced. The reaction mixture was filtered, the solid
was washed with water and EtOH. The product was recrystallised
from acetone and PE as yellow solid. Yield 44.6%.1H NMR (DMSO-d6,
for 30 min. The solution was stirred at 0 ꢀC followed by slow
addition of 1-(bromomethyl)benzene (1.80 mL, 13.7 mmol) for
another 1 h. After the reaction was completed, put the mixture
into water (150 mL) and acidified with 4 N HCl while the
precipitate produced. The white precipitate was filtered off,
washed with water and EtOH, vacuum dried to afford 18a (2.49 g,
400 MHz):
d
2.42 (s, 3H), 5.48 (s, 2H), 6.29 (d,1H, J ¼ 16.0 Hz), 7.06 (d,
82.3% Yield). 1H NMR (CDCl3, 400 MHz):
d 3.66 (s, 2H), 5.38 (s, 2H),
1H, J ¼ 8.4 Hz), 7.09e7.16 (m, 2H, JHH ¼ 6.0 Hz, JHF ¼ 7.6 Hz), 7.23 (t,1H,
J ¼ 9.2 Hz), 7.34 (t,1H, J ¼ 6.8 Hz), 7.42 (d,1H, J ¼ 8.8 Hz), 7.68 (s,1H),
7.74 (d,1H, J ¼ 16.0 Hz), 7.97 (s,1H),12.01 (s,1H); 13C NMR (DMSO-d6,
7.01 (t, 1H, J ¼ 7.2 Hz), 7.10 (t, 1H, J ¼ 7.6 Hz), 7.19 (d, 2H,
J ¼ 7.6 Hz), 7.23 (d, 1H, J ¼ 7.2 Hz), 7.30 (t, 2H, J ¼ 7.2 Hz), 7.41 (t,
2H, J ¼ 8.8 Hz), 7.50 (d, 1H, J ¼ 7.6 Hz), 12.22 (s, 1H); 13C NMR
100 MHz):
d
21.59, 43.99, 111.05, 111.55, 113.09, 115.88, 120.38,
(DMSO-d6, 100 MHz): d 31.32, 49.38, 108.14, 110.51, 119.22, 119.45,
124.53, 125.15, 125.18, 126.33, 130.00, 134.69, 135.97, 138.29, 148.79,
121.78, 127.56, 127.79, 128.12, 128.99, 136.39, 138.78, 173.52; MS
159.20, 161.64, 169.02; MS (ESI), m/z: 308.00 [M ꢃ H]ꢃ.
(ESI), m/z: 264.31 [M ꢃ H]ꢃ.
5.1.11.1. (E)-3-(1-(2-Fluorobenzyl)-5-methoxy-1H-indol-3-yl)acrylic
5.1.12.1. 2-(1-(2-Methyl)-1H-indol-3-yl)acetic acid (18b). Yield 85.2%.
acid (16b). Yield 56.2%. 1H NMR (DMSO-d6, 400 MHz):
d
(d, 3H,
1H NMR (DMSO-d6, 400 MHz):
d 2.30 (s, 3H), 3.66 (s, 2H), 5.37 (s, 2H),
J ¼ 9.6 Hz), 5.48 (s, 2H), 6.25 (d, 1H, J ¼ 16.0 Hz), 6.86 (dd, 1H,
J1,2 ¼ 2.0 Hz, J1,3 ¼ 9.2 Hz), 7.11e7.16 (m, 2H, JHH ¼ 7.6 Hz,
JHF ¼ 7.6 Hz), 7.23 (t, 1H, J ¼ 9.2 Hz), 7.29 (d, 1H, J ¼ 2.4 Hz),
7.32e7.36 (m,1H), 7.44 (d, 1H, J ¼ 8.8 Hz), 7.76 (d, 1H, J ¼ 16.0 Hz),
8.00 (s, 1H), 11.91 (s, 1H); MS (ESI), m/z: 324.00 [M ꢃ H]ꢃ.
6.57 (d, 1H, J ¼ 7.6 Hz), 7.01e7.10 (m, 3H), 7.11e7.19 (m, 2H), 7.21 (s,
1H), 7.35 (d, 1H, J ¼ 8.4 Hz), 7.53 (d, 1H, J ¼ 7.6 Hz), 12.28 (s, 1H); MS
(ESI), m/z: 278.45 [M ꢃ H]ꢃ.
5.1.12.2. 2-(1-(2-Fluorobenzyl)-1H-indol-3-yl)acetic acid (18c). 1H
NMR (DMSO-d6, 400 MHz):
d 3.65 (s, 2H), 5.44 (s, 2H), 7.03 (T, 1H,
5.1.11.2. (E)-3-(1-(2-Fluorobenzyl)-2-methyl-1H-indol-3-yl)acrylic
J ¼ 7.6 Hz), 7.07e7.14(m, 3H, JHH ¼ 7.6 Hz, JHF ¼ 9.2 Hz), 7.22 (t, 1H,
J ¼ 9.2 Hz), 7.30e7.34 (m, 1H), 7.35 (s, 1H), 7.44 (d, 1H, J ¼ 8.4 Hz),
7.51 (d, 1H, J ¼ 7.6 Hz), 12.23 (s, 1H); MS (ESI), m/z: 282.30 [M ꢃ H]ꢃ.
acid (16c). Yield 74.9%. 1H NMR (CDCl3, 400 MHz):
d 2.51 (s, 3H),
5.35 (s, 2H), 6.48 (d, 1H, J ¼ 16.0 Hz), 6.68 (d, 1H, J ¼ 9.2 Hz), 6.75 (d,
1H, J ¼ 8.0 Hz), 6.93e6.98 (m, 1H), 7.24e7.30 (m, 4H, JHH ¼ 8.0 Hz,
JHF ¼ 8.4 Hz), 7.96 (d, 1H, J ¼ 7.6 Hz), 8.09 (d, 1H, J ¼ 16.0 Hz), 12.01
5.1.12.3. 2-(1-(3-Fluorobenzyl)-1H-indol-3-yl)acetic acid (18d).
(s,1H); 13C NMR (DMSO-d6, 100 MHz):
d
10.81, 46.05,108.94,110.92,
Yield 88.6%. 1H NMR (DMSO-d6, 400 MHz):
d 3.67 (s, 2H), 5.41 (s,
112.67, 113.50, 114.55, 120.11, 121.94, 122.62, 124.36, 125.72, 131.26,
137.47, 140.81, 142.66, 150.05, 161.57, 164.60, 169.16; MS (ESI), m/z:
308.04 [M ꢃ H]ꢃ.
2H), 7.00e7.05 (m, 3H, JHH ¼ 7.6 Hz, JHF ¼ 7.2 Hz), 7.07 (d, 1H,
J ¼ 1.6 Hz), 7.11 (t, 1H, J ¼ 7.2 Hz), 7.32 (q, 1H, J1,2 ¼ 8.0 Hz,
J1,3 ¼ 14.4 Hz), 7.42 (s, 1H), 7.44 (s, 1H), 7.51 (d, 1H, J ¼ 8.0 Hz), 12.25
(s, 1H); MS (ESI), m/z: 282.30 [M ꢃ H]ꢃ.
5.1.11.3. (E)-3-(1-(3-Fluorobenzyl)-5-methyl-1H-indol-3-yl)acrylic
acid (16d). Yield 68.3%. 1H NMR (DMSO-d6, 400 MHz):
d
2.42 (s,
5.1.12.4. 2-(1-(4-Fluorobenzyl)-1H-indol-3-yl)acetic
acid
3.65 (s, 2H),
3H), 5.45 (s, 2H), 6.30 (d, 1H, J ¼ 16.0 Hz), 7.03e7.12 (m, 4H,
JHH ¼ 6.8 Hz, JHF ¼ 7.2 Hz), 7.33 (q, 1H, J1,2 ¼ 7.6 Hz, J1,3 ¼ 14.0 Hz),
7.42 (d, 1H, J ¼ 8.4 Hz), 7.68 (s, 1H), 7.75 (d, 1H, J ¼ 16.0 Hz), 8.05 (s,
1H), 11.96 (s, 1H); MS (ESI), m/z: 308.04 [M ꢃ H]ꢃ.
(18e). Yield 80.5%. 1H NMR (DMSO-d6, 400 MHz):
d
5.37 (s, 2H), 7.01 (t, 1H, J ¼ 7.2 Hz), 7.08 (d, 1H, J ¼ 1.6 Hz), 7.10e7.16
(m, 2H, JHH ¼ 8.8 Hz, JHF ¼ 9.2 Hz), 7.24e7.28 (m, 2H), 7.40 (s, 1H),
7.43 (d,1H, J ¼ 8.4 Hz), 7.50 (d,1H, J ¼ 7.6 Hz),12.23 (s,1H); MS (ESI),
m/z: 282.30 [M ꢃ H]ꢃ.
5.1.11.4. (E)-3-(1-(3-Fluorobenzyl)-5-methoxy-1H-indol-3-yl)acrylic
acid (16e). Yield 76.7%. 1H NMR (DMSO-d6, 400 MHz):
d 3.79 (s,
3H), 5.44 (s, 2H), 6.25 (d, 1H, J ¼ 16.0 Hz), 6.84 (dd, 1H, J1,2 ¼ 2.4 Hz,
J1,3 ¼ 8.8 Hz), 7.03e7.12 (m, 3H, JHH ¼ 8.0 Hz, JHF ¼ 8.0 Hz), 7.29 (d,
1H, J ¼ 2.0 Hz), 7.33 (q, 1H, J1,2 ¼ 7.6 Hz, J1,3 ¼ 14. 0 Hz), 7.43 (d, 1H,
J ¼ 8.8 Hz), 7.77 (d, 1H, J ¼ 16.0 Hz), 8.08 (s, 1H), 11.91 (s, 1H); MS
(ESI), m/z: 324.00 [M ꢃ H]ꢃ.
5.2. Biological methods
5.2.1. TNF-a inhibition assay
RAW 264.7 cells were seeded in wells and incubated for 24 h.
After incubation, the cells were incubated with all compounds of
different concentrations in the presence of LPS (1
mg/mL) for 24 h.
5.1.11.5. (E)-3-(1-(4-Fluorobenzyl)-5-methoxy-1H-indol-3-yl)acrylic
The TNF- concentration in the culture medium was determined by
ELISA kit (R&D Systems, Minneapolis, MN).
a
acid (16f). Yield 66.4%. 1H NMR (DMSO-d6, 400 MHz):
d
3.79 (s, 3H),
5.40 (s, 2H), 6.25 (d, 1H, J ¼ 16.0 Hz), 6.83 (dd, 1H, J1,2 ¼ 2.4 Hz,
J1,3 ¼ 8.8 Hz), 7.15 (t, 2H, J ¼ 8.8 Hz), 7.28e7.31 (m, 3H, JHH ¼ 6.0 Hz,
JHF ¼ 7.6 Hz), 7.43 (d, 1H, J ¼ 8.8 Hz), 7.76 (d, 1H, J ¼ 16.0 Hz), 8.06 (s,
1H); MS (ESI), m/z: 324.00 [M ꢃ H]ꢃ.
5.2.2. Apparent Ki values
1,8-ANS was dissolved in absolute ethanol and diluted with
25 mM TriseHCl (pH 7.4) to a final concentration of 5 M (final
EtOH concentration of 0.05%). Rat ap2 protein was titrated into
500 L 1,8-ANS and the fluorescence enhancement was measured
m
5.1.11.6. (E)-3-(1-(3-Fluorobenzyl)-2-methyl-1H-indol-3-yl)acrylic
m
acid (16g). Yield 65.3%. 1H NMR (CDCl3, 400 MHz):
d
2.53 (s, 3H),
using a PerkineElmer 650-10S fluorescence spectrophotometer
with 4 nm excitation and emission slit widths. 12b (diluted from
a 10 mM stock in absolute ethanol) was added to the ap2/1,8-ANS
complex, mixed for 45 s, and the fluorescence signal was record.
The decay in corrected fluorescence intensity as a function of
competitor concentration was used to determine the midpoint of
the competition (I50).
An apparent Ki value was calculated using Ki ¼ [I50]/(1 þ [L]/Kd),
where [L] ¼ free concentration of 1,8-ANS, and Kd ¼ apparent
dissociation constant of ap2 for 1,8-ANS.
5.41 (s, 2H), 6.48 (d, 1H, J ¼ 16.0 Hz), 6.51 (d, 1H, J ¼ 14.4 Hz), 6.97 (t,
1H, J ¼ 7.6 Hz), 7.12 (t,1H, J ¼ 8.8 Hz), 7.22e7.29 (m, 3H, JHH ¼ 7.2 Hz,
JHF ¼ 8.0 Hz), 7.96 (m, 2H), 8.09 (d, 1H, J ¼ 16.0 Hz), 8.86 (d, 1H,
J ¼ 4.8 Hz); MS (ESI), m/z: 308.05 [M ꢃ H]ꢃ.
5.1.12. General procedure for the synthesis of 2-(1-benzyl-1H-indol-
3-yl)acetic acid
A mixture of 2-(1H-indol-3-yl)acetic acid (2 g, 11.4 mmol) and
NaH (1.1 g, 45.8 mmol) in anhydrous DMF (20 mL) stirred at 0 ꢀC