Fluorescent amino- and thiopyronin dyes

Article abstract of DOI:10.1021/ol800526s

Highly fluorescent rhodamine/rosamine analogues 2 were prepared from ketone 1.

Full text of DOI:10.1021/ol800526s

ORGANIC
LETTERS
2008
Vol. 10, No. 9
1779-1782
Fluorescent Amino- and Thiopyronin
Dyes
Liangxing Wu and Kevin Burgess*
Texas A & M UniVersity, Chemistry Department, P.O. Box 30012, College Station,
Texas 77842
burgess@tamu.edu
Received March 7, 2008
ABSTRACT
Highly fluorescent rhodamine/rosamine analogues 2 were prepared from ketone 1.
Fluorescent dyes of structure A (Figure 1) where Y ) aryl
include many compounds of the rhodamine and rosamine
class.1 Compounds A where Y ) alkyl are known,2–4 but
they are not frequently used. However, there is almost no
literature on any substances where Y ) NR2 or SR. In fact,
to the best of our knowledge, the only reported compound
in this category is “Pyronin 12”, i.e., structure B. Dyes that
have been christened with a trivial name are often well-
known and frequently used. However, Pyronin 12 was
mentioned peripherally in a paper on dimerization of dyes
in aqueous solution,5,6 but its synthesis and spectroscopic
properties were not reported. Moreover, there do not appear
to be any reports of others using this dye, or any like it,
since it was first described. This paper outlines syntheses
and the spectroscopic properties of a range of dyes A where
the Y substituent is an amine or a thiol.
Figure 1. Rhodamine and rosamine analogues.
The approach used in this work was based on reactions
of a ditriflyl xanthone with piperidine derivatives as shown
in Figure 2. The starting material for this transformation is
a known compound7 that we prepared via a slight modifica-
tion of the literature procedure (see the Supporting Informa-
tion); this modification was scalable to at least 13 g since,
unlike the original method, no chromatography was required.
Amines related to 1a and 1b have been prepared via
condensation procedures that involve several steps;8–13 the
reaction outlined below is more direct once the common
(1) Haugland, R. P. Handbook of Fluorescent Probes and Research
Chemicals, 6th ed.; Molecular Probes: Eugene, OR, 1996.
(2) Tombline, G.; Donnelly, D. J.; Holt, J. J.; You, Y.; Ye, M.; Gannon,
M. K.; Nygren, C. L.; Detty, M. R. Biochemistry 2006, 45, 8034
(3) Guilhem, J. Compt. Rend. 1959, 248, 2584
(4) Babko, A. K.; Chalaya, Z. I. Zh. Anal. Khim. 1963, 18, 570
(5) Dare-Doyen, S.; Doizi, D.; Guilbaud, P.; Djedaieni-Pilard, F.; Perly,
B.; Millie, P. J. Phys. Chem. B 2003, 107, 13803
(6) Scala-Valero, C. Thesis. Synthese et caracterisation de nouveaux
colorants laser, University of Orleans: Orleans, France, 1997
.
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(8) Beach, S. F.; Hepworth, J. D.; Mason, D.; Swarbrick, E. A. Dyes
.
Pigm. 1999, 42, 71
(9) Brennan, N. K.; Donnelly, D. J.; Detty, M. R. J. Org. Chem. 2003,
68, 3344
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(7) Chang, M. C. Y.; Pralle, A.; Isacoff, E. Y.; Chang, C. J. J. Am.
Chem. Soc. 2004, 126, 15392.
.
10.1021/ol800526s CCC: $40.75
Published on Web 04/09/2008
2008 American Chemical Society

as a vinylogous urea. Thus, no reaction was observed when
piperidine was heated with the ketones under mildly acidic
conditions. Conversely, the nucleophilicity of the oxygen
atom is increased for the same reason; hence, it can be
triflated. These triflates were not isolated, but instead were
reacted with amines or benzyl thiol to give the fluorescent
compounds 2a-f (Table 1).
Figure 2. SNAr reactions to prepare diamines 1.
ditriflyl xanthone starting material has been made. The
product precipitates from the reaction mixture after addition
of water and is then recrystallized. There are, however,
restrictions on the amines that can be used; less nucleophilic
ones (e.g., HNBu2, HNEt2) tended to give mostly monosub-
stitution under the conditions studied (DMSO, 90 °C).
Table 1. Synthesis of Novel Pyronins
Figure 3. X-ray structure of novel pyronin 2c.
A single-crystal X-ray structure of compound 2c was
obtained (Figure 3). This provided two pieces of evidence
that all three nitrogen atoms are involved in delocalization
of the positive charge from the aromatic core. First, all three
nitrogens are essentially planar (deviation of the nitrogen
away from the plane formed by the three substituents was
observed to be 0.062 Å for the central amine and 0.175/
0.223 Å for the terminal ones). Second, the deviation of that
plane from the one which encapsulated the aromatic segment
of the molecule was 9-22°, and the C-N distances for the
bonds that connect the amine substituents to the pyronin core
were 1.35-1.37 Å (whereas other C - N single bonds in
the same molecule were 1.45-1.47 Å). These observations
are indicative of lone pair donation from the pyronin amine
substituents into the core heterocyclic framework.
Selected spectral properties of the molecules 2 are shown
in Table 2. The compounds formed from nitrogen nucleo-
philes 2a-d, f absorb in the range 456-499 nm with high
extinction coefficients (51000-62000). They emit in the
range 537-562 nm with quite sharp emissions (fwhm )
41-55 nm; cf. the same parameter for rhodamine B in
CH2Cl2 is 36 nm, and rhodamines are generally recognized
to give sharp fluorescent emissions). Quantum yields are least
in the series for the compounds from secondary amines (2a,
2b, and 2f), and these emit at longer wavelengths. Other
compounds in the series that were derived from primary
amines (2c and 2d) had markedly higher quantum yields.
The S-containing compound 2e absorbs and emits at sig-
The ketone functionality of compounds 1 is less reactive
because of the arylamine substituents; it may be considered
(10) Detty, M. R.; Prasad, P. N.; Donnelly, D. J.; Ohulchanskyy, T.;
Gibson, S. L.; Hilf, R. Bioorg. Med. Chem. 2004, 122537
(11) Del Valle, D. J.; Donnelly, D. J.; Holt, J. J.; Detty, M. R.
Organometallics 2005, 24, 3807.
.
(12) Holt, J. J.; Calitree, B. D.; Vincek, J.; Gannon, M. K., II; Detty,
M. R. J. Org. Chem. 2007, 72, 2690.
(13) Ahn, Y.-H.; Lee, J.-S.; Chang, Y.-T. J. Am. Chem. Soc. 2007, 129,
4534.
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Org. Lett., Vol. 10, No. 9, 2008

Table 2. Spectral Properties of 2 Measured in CH2Cl2
λmax
(nm)
ꢀmax
(L·mol-1·cm-1
λf
(nm)
fwhma
(nm)
)
Φfb
2a
2b
2c
2d
2e
2f
491
499
456
462
598
482
60400
51000
52400
62000
82600
54900
562
558
537
544
619
552
55
41
52
52
38
47
0.14 ( 0.01
0.11 ( 0.02
0.85 ( 0.01
0.90 ( 0.02
0.79 ( 0.02c
0.02 ( 0.01
a Full width at half-maximum height: a measurement of the sharpness
of the fluorescence spectra. b Average of three measurements; fluorescein
in 0.1 M NaOH (Φ ) 0.92)14 was used as a standard. c Cresyl violet in
MeOH (Φ ) 0.54)15 was used as a standard.
nificantly longer wavelengths, and with a sharper output; for
these reasons, this is possibly the most interesting dye in
the series.
Figure 4. Normalized UV absorbance and fluorescence (excited at
λ
max abs) of novel pyronins 2 in CH2Cl2 (ca. 10-6 M for absorbance;
10-7 M for fluorescence).
Normalized spectra that correspond to the data in Table 2
are shown in Figure 4. Compounds 2c and 2d absorb UV
and fluoresce at shorter wavelengths than the others. Con-
versely, the absorption and fluorescence of compound 2e is
further to the red of the others in the series.
Figure 5. pH dependence of UV absorbance for 2c under (a) acidic
and (b) basic conditions (CH2Cl2, 1.1 × 10-5 M). Fluorescence pH
dependence of 2c under (c) acidic and (d) basic conditions (CH2Cl2,
2.5 × 10-7 M, excited at 456 nm). (e) Fluorescence intensity of 2c
under alternating basic (Et3N) and acidic (TFA) conditions (CH2Cl2,
2.5 × 10-7 M, excited at 456 nm).
Compounds 2a, 2c, and 2e were selected for pH depen-
dence studies; data for 2c are shown here. The UV absorption
(14) Weber, G.; Teale, F. W. J. Trans. Faraday Soc. 1958, 54, 640.
(15) Magde, D.; Brannon, J. H. J. Phys. Chem. 1979, 83, 696.
Org. Lett., Vol. 10, No. 9, 2008
1781

of this compound was uneffected by addition of TFA but
was decreased by addition of NEt3 (Figure 5a,b). The
fluorescent emission characteristics of this compound fol-
lowed the same trend (Figure 5c,d). Figure 5e shows that
the impact of NEt3 on the fluorescence of this compound is
essentially reversible. Dye 2a, which has a tertiary amine
meso-substituent, showed a different pH dependence (see the
Supporting Information) possibly because it does not have
a relatively acidic proton. Thiol derivative 2e showed no UV
or fluorescence change on addition of TFA, but addition of
NEt3 caused decomposition (see the Supporting Information).
The spectral data summarized above are consistent with
reversible deprotonation of the central amine under mildly
basic conditions. That proton loss gives a less conjugated
and nonfluorescent imine derivative (Figure 6).
In summary, a direct route to novel heteroatom analogs
of rhodamine and rosamine systems is described here.
Spectral properties of the compounds are highly dependent
on the nature of the nucleophile that is used to add to the
central carbon atom. In that regard, the S-containing com-
pound 2e is of particular interest to the community seeking
fluorophores that emit above the 600 nm mark.
Figure 6. Likely acid/base equilibrium for 2c.
National Institutes of Health (GM72041) and by The Robert
A. Welch Foundation.
Supporting Information Available: Experimental pro-
cedures and characterization data for the new compounds
and crystallographic data (CIF). This material is available
free of charge via the Internet at http://pubs.acs.org.
Acknowledgment. We thank Dr. J. Reibenspies at TAMU
X-ray Diffraction Laboratory for the X-ray crystallographic
study, and the TAMU/LBMS-Applications Laboratory di-
rected by Dr. Shane Tichy for assistance with mass spec-
trometry. Support for this work was provided by The
OL800526S
1782
Org. Lett., Vol. 10, No. 9, 2008