chains at the upper rim, only charge-charge interactions,
which are strengthened in the ethanol/water mixture, control
the DNA condensation process. Overall, the former “double
interaction” mechanism in DNA condensation is more
efficient than the latter “single interaction” pathway, and this
explains the AFM results. No DNA condensation at all was
observed with Gemini 2 (up to 50 µM, N/P ) 20) with or
without ethanol (Figure 2f).
Encouraged by the biophysical evidence of DNA binding
and condensation, we performed transfection experiments
using plasmid DNA pEGFP-C1 (1 nM), which expresses a
green fluorescent protein detectable in the cell by fluores-
cence microscopy, and RD-4 human rhabdomyosarcoma
cells. This cell line was chosen because, beyond the medical
relevance, it is easy to grow and not very well transfectable
by traditional methods compared to other cell lines like HEK
293 cells and therefore useful to judge the real transfection
capability of our compounds. No transfection occurs when
either DOPE (Figure S11 in Supporting Information) or
ligands 1a-c are used alone, whereas the formulation ligand/
DOPE (1/2 molar ratio) especially at ligand 10 µM (N/P )
4) is quite effective. In these conditions, we were pleased to
see (Figures 3 and 4 in the article and Figure S12 in
Figure 2. AFM images showing the effects induced on plasmid
DNA by guanidinium ligands 1a-c and 2. All images were obtained
with the microscope operating in tapping mode in air and with
supercoiled pEGFP-C1 plasmid deposited onto mica at a concentra-
tion of 0.5 nM. (a) Plasmid without guanidinium derivative. Plasmid
incubated with (b) 1a 0.6 µM; (c) 1c 2.5 µM; (d) 1b 1.8 µM; (e)
1b 1.8 µM + 10% EtOH; and (f) 2 50 µM. Each image represents
a 2 × 2 µm scan.
rather intriguing and subtle dependence of the DNA con-
densation ability of compounds 1a-c on the alkyl substituent
at the upper rim was observed. The p-tert-butyl derivative
1a forms highly condensed, nanometric condensates of single
DNA plectonemes even at 0.6 µM concentration (Figure 2b)
with N/P ) 0.5 (N/P ) guanidinium/phosphate ratio),
whereas the hexyl derivative 1c condenses DNA only at
concentration of 2.5 µM (N/P ) 2) and forms condensates
constituted by more filaments (Figure 2c). On the contrary,
the upper rim unsubstituted compound 1b does not form tight
condensates, although the single plectonemes are much more
constrained (Figure 2d) with respect to their relaxed state (Figure
2a), due to their interaction with the charged guanidinium
groups. At concentrations of 1b higher than 5 µM (N/P g 4),
no DNA results deposited on the mica surface. Evidently, in
these conditions, 1b causes the complete masking of the DNA
negative charges preventing its deposition.
Figure 3. Transfection experiments performed with pEGFP-C1
plasmid 1 nM, guanidinium calixarene/DOPE (1/2 molar ratio, 10/
20 µM), 2/DOPE (1/1 molar ratio), and lipofectamine LTX
formulations to rhabdomyosarcoma cells. Transfected cells are
visualized with fluorescence microscopy (upper row, in light green
because they express the enhanced green fluorescence protein
EGFP) and phase contrast microscopy (lower row).
The compact condensates formed by 1a and 1c are
partially relaxed (Figure S10 in Supporting Information) upon
addition of ethanol (10% in the buffer solution), while in
the case of the para- unsubstituted 1b at 1.8 µM (N/P )
1.5), the presence of the alcohol favors the plasmid conden-
sation (Figure 2e). This indicates that in para-alkyl substi-
tuted macrocycles 1a and 1c the primary electrostatic
interaction between the guanidinium groups and the DNA
phosphate anions is followed by hydrophobic interactions
between the alkyl chains. The latter interactions, which
induce the formation of condensates, are partially lost in
hydroalcoholic solution. In the case of 1b, which lacks alkyl
Supporting Information) that compound 1b is a very efficient
transfectant for RD-4 human rhabdomyosarcoma cells. The
amount of transfected cells (48%, Figure 4) is higher than
that achieved by the commercially available lipofectamine12
LTX (30%, Figures 3 and 4) and by the previously
investigated upper rim tetraguanidinium calix[4]arenes (less
than 20%, Figure 4). Moreover, little transfection activity is
observed for compounds 1a (3-4%) and 1c (6-7%) and
for 2 (ca. 6% at 20 µM).
Quite rewarding was the finding that the most active
compound 1b has a very low cytotoxicity (Figure 5) showing
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