Journal of Agricultural and Food Chemistry
Article
the past, there have been no studies determining the
biosynthetic pathway for the benzylic derivative production
in I. resinosum.25,26 Therefore, the aim of this study was to
elucidate the biosynthetic pathway to produce benzaldehyde,
4-methoxybenzaldehyde, and 3,4-dimethoxybenzaldehyde in a
fermentation broth. In addition, this study also aimed to utilize
the knowledge of the biosynthetic pathway in production of
natural benzylic derivatives, using production of commercially
valuable natural vanillin as one example. Accordingly, the
objectives were to; (1) cultivate the fungus in liquid broth and
incubate the fermentations with isotopically labeled precursors,
(2) elucidate the biosynthetic pathway using labeled isotope
studies coupled with gas chromatography−mass spectrometry
(GC−MS), and (3) utilize the knowledge of the biosynthetic
pathway to produce natural vanillin via fermentation.
Table 1. List of Putative Precursor and Intermediate
Compounds Produced in Fungal Fermentations and Their
Linear Retention Indices
c
RI
a
b
no.
compound
FFAP
DB-5
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
anisole*
1275
1569
1829
1973
1982
2256
2397
2405
2552
2613
2679
2694
2751
2755
2758
2768
2839
2849
2868
2894
2984
3085
3158
3442
3497
3657
921
960
1078
988
benzaldehyde*
benzyl alcohol*
phenol*
4-methoxybenzaldehyde*
4-methoxybenzyl alcohol*
3,4-dimethoxybenzaldehyde*
benzoic acid*
4-hydroxy-3-methoxybenzaldehyde
3,4-dimethoxybenzyl alcohol*
3-hydroxybenzaldehyde
4-hydroxy-3-methoxybenzyl alcohol
4-methoxybenzoic acid*
3,4-dihydroxybenzaldehyde
3-hydroxy-4-methoxybenzaldehyde*
3-hydroxy-4-methoxybenzyl alcohol
4-hydroxybenzaldehyde*
4-hydroxybenzyl alcohol
3-hydroxybenzyl alcohol
1254
1282
1479
1168
1400
1500
1371
1450
1225
2487
1455
1463
1362
1345
1349
1590
2363
1591
2340
2523
2179
2374
MATERIALS AND METHODS
■
Microorganism. The strain, UT-PW019, used in a previous study,
was isolated from a mature basidiocarp. Internal transcribed spacer
(ITS) sequencing results and phenotypical characteristics led to the
identification of UT-PW019 as I. resinosum.16 The fungal isolate was
decontaminated using 10% bleach solution for 10 min and sterile
deionized water for 15 min. Upon decontamination, the specimen was
cultured on Petri dishes containing potato dextrose agar (PDA)
(Himedia, India).16 Fermentations were maintained at 25 °C in a
MIR-254 cooled incubator (Panasonic Healthcare Co., Ltd., Japan).
Species confirmation for UT-PW019 was conducted via internal
transcribed spacer (ITS) sequencing with primers, ITS 4 (5′-
TCCTCCGCTTATTGATATGC) and ITS 5 (5′-GGAAG-
TAAAAGTCGTAACAAGG) as described previously.16,19 Fungal
isolates were cryopreserved at −80 °C in potato dextrose broth
(PDB) (Himedia, India), supplemented with glycerol (10%, v/v) as
frozen agar plugs using a Mr. Frosty freezing container (Thermo
Fisher Scientific, Fair Lawn, NJ) for future use. The ITS sequence was
deposited in the national center for biotechnology information
(NCBI) database under the GenBank accession number, MN633306.
Medium and Culture Conditions. Erlenmeyer flasks containing
PDB (85 mL) were inoculated with 7-day-old mycelia grown on PDA
homogenized in 100 mL of sterile deionized water (1 mL).
Fermentations were maintained aerobically at 25 °C and 120 rpm
on an advanced digital shaker (VWR, Radnor, PA).
3-hydroxy-4-methoxybenzoic acid
3,4-dihydroxybenzyl alcohol
3,4-dimethoxybenzoic acid*
3-hydroxybenzoic acid
3,4-dihydroxybenzoic acid
4-hydroxy-3-methoxybenzoic acid
4-hydroxybenzoic acid
a
Compounds numbered per retention time on FFAP column.
b
Identified by comparing retention indices on FFAP and DB-5
c
columns. Linear retention index (RI). *Indicates compound was
detected in fungal fermentations.
Scientific (Fair Lawn, NJ). A mixture of n-alkanes C9−C18 was
obtained from Phenomenex (Torrance, CA), and individual n-alkanes
C19−C26 as well as a mixture of n-alkanes C21−C40 were purchased
from Millipore Sigma (St. Louis, MO).
Reference Compounds. Reference standards 1−26 (Table 1)
purchased from Sigma-Aldrich (St. Louis, MO) were used to identify
putative precursor and intermediate compounds involved in the
biosynthesis of benzylic derivatives in fungal fermentations. Each
compound was identified using mass spectra of authentic reference
standards as well as retention indices (RI) on both FFAP and DB-5
columns. A mixture of n-alkanes (C9−C40) was analyzed using GC−
MS to obtain retention time for each hydrocarbon to calculate linear
retention indices.
Isotope Incubation Studies. Two fungal fermentation broth
cultures (75 g) were incubated with 1 mL of isotopically labeled and
unlabeled precursor compounds (1000 ppm) prepared in diethyl
ether at 25 °C and 120 rpm for a designated number of additional
days on an advanced digital shaker (VWR, Radnor, PA). The isotope
used, culture age at addition/isotope incubation time is as follows:
(2H5)-2, 1/5 days; (2H5)-2, 1/12 days; (2H5)-3, 1/5 days; (2H5)-3, 1/
12 days; (2H3)-5, 7/17 days; (2H6)-7, 7/14 days; (2H5)-8, 1/5 days;
(2H5)-8, 1/12 days; and (2H3)-25, 7/14 days. The fermentation broth
without the biomass from each incubation was then sequentially
extracted with freshly distilled diethyl ether (150 mL) on an
autoshaker (VWR) at ambient temperature for 10 min. Upon
extraction, the fermentations were centrifuged using a Sorvall RC5B
plus refrigerated centrifuge (Marshall Scientific, Hampton, NH)
operated at 2489 × g for 5 min and supernatants were collected.
Organic layers were isolated using a separatory funnel. The final
extracts were subjected to high vacuum distillation using solvent
assisted flavor evaporation (SAFE) maintained at 10−3 Pa, as
described previously.16 Briefly, each sample was gradually released
into the temperature-controlled evaporation flask (41 °C) until
completion. Upon completion, the distillate was thawed at room
temperature and dried over anhydrous sodium sulfate. Final samples
were then concentrated to ∼2 mL using a Vigreux column (50 × 1
cm2) and to 200 μL under a gentle stream of nitrogen as described
previously.16 High vacuum distillates were analyzed using GC−MS.
Isotopically Labeled Compounds. (2H5)-2, (2H5)-3, (2H3)-5,
(2H5)-8, and (2H3)-25 were purchased from C/D/N isotopes
(Quebec, Canada), and (2H6)-7 was purchased from aromaLAB
(Planegg, Germany). Positions of isotopic labels are as shown in
Figures 1, 3−6. Isotopically labeled compounds were dissolved in 5
mL volumetric flasks containing freshly distilled diethyl ether.
Compounds 2, 3, 8, and 25 were dissolved at known concentrations,
whereas compounds 5 and 7 were quantitated using isotopically
unmodified compounds as reference standards. The ions used for
each compound were as follows (unlabeled/labeled standard): 2, m/z
105/110; 3, m/z 79/84; 5, m/z 135/138; 7, m/z 166/172; 8, m/z
105/110; 25, m/z 151/154.
Solvents and Other Chemicals. Chromatographic-grade diethyl
ether and pentane were obtained from Honeywell Burdick & Jackson
(Muskegon, MI) and Millipore Sigma (St. Louis, MO), respectively.
Solvents were distilled in-house using a 250 mL CG-1233 series
distillation head from Chemglass Life Sciences (Vineland, NJ) prior
to use. Anhydrous sodium sulfate was purchased from Fisher
B
J. Agric. Food Chem. XXXX, XXX, XXX−XXX