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N. Hamon et al. / Bioorganic Chemistry 38 (2010) 275–278
7.33–7.39 (m, 5H), 7.21–7.25 (m, 3H), 7.17–7.20 (m, 2H), 6.11 (d,
J = 1.2 Hz, 1H), 5.19 (m, 1H), 5.07 (m, 1H), 4.71 (d, J = 12.0 Hz,
1H), 4.65 (d, J = 6.3 Hz, 1H), 4.62 (s, 2H), 4.49 (d, J = 12.0 Hz, 1H),
4.30 (s, 2H), 4.17 (d, J = 4.2 Hz, 1H); 13C NMR (CDCl3, 75 MHz) d
151.3, 151.2, 150.9, 145.4, 143.6, 137.6, 137.6, 131.9, 128.5,
128.3, 128.0, 127.9, 127.8, 126.4, 80.6, 75.9, 73.1, 72.6, 71.7, 66.5;
FAB-MS (>0) m/z 463 [M + H]+. HRMS TOF MS E+ for C25H24ClN4O3:
calculated: 463.1537 found: 463.1547. Anal. Calcd for
C25H23ClN4O3. 0.35 Et2O: C, 64.86; H, 5.46; N, 11.46. Found: C,
64.64; H, 5.86; N, 11.35.
2.4. (ꢀ)-(1S,2R,3R,4S,5R)-4-(benzyloxy)-1-[(benzyloxy)methyl]-3-(6-
chloro-9H-purin-9-yl)-6-oxabicyclo[3.1.0]hexan-2-ol (9)
To as solution of 8 (158 mg, 0.34 mmol) in CH2Cl2 (7.2 mL) at
0 °C was added a solution of m-CPBA (124 mg, 0.72 mmol) in
CH2Cl2 (3.6 mL). The reaction mixture was stirred at room temper-
ature for 21 h and solvent was evaporated under reduced pressure.
The residue was purified by column chromatography using diethyl
ether to afford 9 as a white foam (503 mg, 93% yield): Rf (diethyl
ether) 0.36; UV (EtOH, 96%) kmax = 266.0 nm (
ꢀ
= 9500); ½a 2D0
ꢀ41
ꢂ
(c 1.0, CHCl3); 1H NMR (CDCl3, 300 MHz) d 8.44 (s, 1H), 8.07 (s,
1H), 7.27–7.38 (m, 5H), 6.89–6.98 (m, 5H), 5.05 (m, 1H), 5.02 (m,
1H), 4.71 (dd, J = 1.2, 8.1 Hz, 1H), 4.65 (s, 2H), 4.64 (d, J = 12.3 Hz,
1H), 4.37 (t, J = 7.6 Hz, 1H), 4.32 (d, J = 12.2 Hz, 1H), 4.08 (d,
J = 11.4 Hz, 1H), 3.85 (d, J = 11.4 Hz, 1H), 3.78 (d, J = 0.9 Hz, 1H);
13C NMR (CDCl3, 75 MHz) d 151.2, 150.7, 150.1, 146.9, 137.4,
136.7, 131.4, 128.5, 127.9, 127.9, 127.8, 127.6, 75.1, 73.8, 71.8,
70.5, 66.9, 56.4, 63.5, 57.6; FAB-MS (>0) m/z 479 [M+H]+. Anal.
Calcd for C25H23ClN4O4. 0.35 Et2O: C, 62.80; N, 11.10; Found: C,
62.97; N, 10.72.
Fig. 1. Naturally occurring carbocyclic nucleosides from the neplanocin family.
2.2. (ꢀ)-9-[(1S,2S,5R)-5-(benzyloxy)-3-[(benzyloxy)methyl]-2-
(methoxymethoxy)-3-cyclopenten-1-yl]-6-chloro-9H-purine (7)
To a solution of 6 (1.12 g, 2.23 mmol) in dry DMF (22.5 mL) was
added successively K2CO3 (971 mg, 7.03 mmol), 6-chloropurine
(776 mg, 5.02 mmol) and 18-crown-6 ether (206 mg, 0.78 mmol).
The mixture was heated at 60 °C for 3 h and poured into brine
(125 mL) and ethyl acetate (125 mL). The aqueous phase was ex-
tracted with ethyl acetate (3 ꢁ 125 mL) and the combined organic
phases were washed with brine (2 ꢁ 125 mL), dried (MgSO4), and
evaporated under reduced pressure. Purification by column chro-
matography using diethyl ether/methylene chloride (5/95 to 10/
90, v/v) gave 7 as a yellow solid (686 mg, 60% yield): mp 93–94
2.5. (ꢀ)-(1S,2S,3R,4R,5R)-3-(6-amino-9H-purin-9-yl)-4-(benzyloxy)-
1-[(benzyloxy)methyl]-6-oxabicyclo[3.1.0]hexan-2-ol (10)
A solution of 9 (716 mg, 13.9 mmol) in saturated methanolic
ammonia (35 mL) in a steel bomb was heated at 70 °C for 14 h.
The reaction mixture was cooled and the solvent removed under
reduced pressure. The residue was purified by column chromatog-
raphy using ethyl acetate/methanol (96:4; v/v) to afford 10 as a
white foam (375 mg, 50% yield); Rf (ethyl acetate/methanol, 9:1)
°C; Rf: (diethyl ether) 0.41; UV (EtOH, 96%) kmax = 266.0 nm (
ꢀ
9000); ½a 2D0
ꢂ
ꢀ23 (c 1.0, CHCl3); 1H NMR (CDCl3, 300 MHz) d 8.62
0.37; UV (EtOH, 96%) kmax = 260.0 nm (
ꢀ
= 12,500); ½a 2D0
ꢀ37 (c
ꢂ
(s, 1H), 7.96 (s, 1H), 7.31–7.38 (m, 5H), 7.10–7.13 (m, 3H), 7.01–
7.04 (m, 2H), 6.12 (s, 1H), 5.13 (d, J = 6.0 Hz, 1H), 5.02 (d,
J = 5.7 Hz, 1H), 4.72 (t, J = 6.0 Hz, 1H), 4.63 (d, J = 12.0 Hz, 1H),
4.59 (d, J = 12.0 Hz, 1H), 4.55 (d, J = 12.0 Hz, 1H), 4.45 (s, 2H),
4.37 (d, J = 12.0 Hz, 1H), 4.19 (d, J = 5.4 Hz, 2H), 3.07 (s, 3H); 13C
NMR (CDCl3, 75 MHz) d 151.3, 151.0, 145.8, 143.0, 137.7, 137.3,
132.3, 128.4, 128.2, 127.9, 127.8, 127.8, 127.7, 127.6, 97.0, 82.5,
81.5, 72.8, 72.0, 71.1, 65.9, 55.5; FAB-MS (>0) m/z 507 [M + H]+.
HRMS TOF MS E+ for C27H28ClN4O4: calculated: 507.1799 found:
507.1800. Anal. Calcd for C27H27ClN4O4. 0.1 Et2O: C, 63.98; H,
5.49, N, 10.99. Found: C, 63.63; H, 5.28; N, 10.97.
1.0, DMSO); 1H NMR (CDCl3, 300 MHz) d 8.13 (s, 1H), 7.69 (s,
1H), 7.38–7.15 (m, 10H), 5.65 (br s, 2H), 5.43 (br s, 1H), 4.87 (d,
J = 7.2 Hz, 1H), 4.72 (d, J = 12.0 Hz, 1H), 4.58–4.67 (m, 3H), 4.54
(d, J = 12.0 Hz, 1H), 4.29 (t, J = 7.3 Hz, 1H), 4.03 (d, J = 11.4 Hz,
1H), 3.83 (d, J = 11.1 Hz, 1H), 3.73 (s, 1H); 13C NMR (CDCl3,
75 MHz) d 155.1, 151.9, 149.5, 141.4, 137.5, 136.9, 128.5, 128.3,
127.9, 127.9, 127.7, 119.9, 76.4, 73.8, 71.5, 70.7, 66.9, 64.2, 63.4,
57.6; FAB-MS (>0) m/z 460 [M + H]+. HRMS TOF MS E+ for
C25H26N5O4: calculated: 460.1985 found: 460.1986. Anal. Calcd
for C25H25N5O4. 0.75 MeOH: C, 63.96; H, 5.84; N, 14.48; Found:
C, 64.17; H, 6.24; N, 14.87.
2.3. (ꢀ)-(1S,4R,5R)-4-(benzyloxy)-2-[(benzyloxy)methyl]-5-(6-
chloro-9H-purin-9-yl)-2-cyclopenten-1-ol (8)
2.6. (ꢀ)-(1S,2S,3S,4R,5R)-3-(6-amino-9H-purin-9-yl)-1-
(hydroxymethyl)-6-oxabicyclo[3.1.0]hexane-2,4-diol (2)
To a solution of 7 (1.5 g, 2.96 mmol) in CH2Cl2 (59 mL) was
added dropwise TFA (14.8 mL). The solution was stirred at room
temperature for 28 h, then poured into an aqueous saturated NaH-
CO3 solution (400 mL) and extracted with CH2Cl2 (3 ꢁ 200 mL). The
combined organic layers were dried (MgSO4) and evaporated to
dryness. A purification by column chromatography using diethyl
ether gave 8 as a white foam (832 mg, 60% yield): Rf (diethyl ether)
To a solution of 10 (375 mg, 0.82 mmol) in methanol (9.1 mL)
was added ammonium formate (772 mg, 12.3 mmol) and 10% Pd/
C (390 mg). The mixture was stirred at reflux for 18 h and filtrated
through a pad of Celite before evaporation of solvent. The residue
was purified by column chromatography using ethyl acetate/meth-
anol (3:1, v/v) to give 2 as a white solid (44 mg, 20% yield); mp
270 °C; Rf (iPrOH, H2O, NH4OH 5:1:1) 0.61; UV (H2O)
0.36; UV (EtOH, 96%) kmax = 266.0 nm (
ꢀ
= 7200); ½a 2D0
ꢂ
ꢀ50 (c 1.0,
kmax = 260.0 nm; ½a D20
ꢂ
ꢀ3.0 (c 1.0, DMSO); 1H NMR (DMSO-d6,
CHCl3); 1H NMR (CDCl3, 300 MHz) d 8.67 (s, 1H), 8.04 (s, 1H),
300 MHz): d 8.05 (br s, 1H), 8.02 (s, 1H) 7.21 (s, 2H, NH2), 5.50