M.P. Middleton et al.
Bioorganic&MedicinalChemistryLettersxxx(xxxx)xxx–xxx
Fig. 2. (A.) Round 1 SAR compounds with varied hydrophobic tails in the first position. (B.) Calculated distribution coefficient (cLogD7.4), C. neoformans antifungal
potency (MIC), and HepG2 liver cell toxicity (TD50) for round 1 SAR compounds. MW = molecular weight; cLogD7.4 = calculated distribution coefficient at pH 7.4;
MIC = minimum inhibitory concentration; TD50 = toxic dose 50%; SR = selectivity ratio (TD50/MIC); ND = not determined.
thirteen to sixteen yielded a compound with a 2-fold improvement in C.
neoformans potency, it unsurprisingly resulted in significantly increased
toxicity against HepG2 liver cells. Neither polyene tail resulted in im-
proved potency, however, the farnesyl tail did show a large decrease in
toxicity (> 800 μg/mL) while possessing a similar cLogD7.4, albeit with
a 16-fold decrease in antifungal potency. We thought that the sig-
nificant decrease in toxicity was important and attempted to recover
antifungal potency through modification of the aromatic heterocycle in
position three during round two of SAR. This resulted in compounds γ-
8, γ-9, and γ-10, none of which showed improved potency over α-4 or
AEC5 (Fig. S4). The use of the farnesyl tail was ultimately abandoned,
and we concluded the optimal alkyl tail in position one was the original
tridecyl tail from AEC5.
heteroatom (γ-6) resulted in a 2-fold improvement in antifungal po-
tency and no significant change in mammalian cell toxicity. A 2-fold
improvement in antifungal potency was observed with three of the
round 2 derivatives; γ-2 with a thiophene side chain, γ-4 with an indole
side chain, and γ-6, as mentioned, with a phenyl side chain. Two of
these, γ-4 and γ-6 exhibited increased or unchanged mammalian cell
toxicity compared to AEC5. However, γ-2 showed a decrease in HepG2
toxicity with a TD50 of 79.3 μg/mL compared to 56.2 μg/mL for AEC5.
With improvement in both potency and toxicity, a selectivity ratio of 25
was calculated for γ-2, compared to 9 for AEC5. A higher selectivity
ratio, defined as the TD50 divided by the MIC, is indicative of a com-
pound that is more selective for pathogen over mammalian cells. Data
from round 2 of SAR indicated that replacing the furan in position three
with a thiophene greatly improved pathogen selectivity by increasing
antifungal potency and decreasing mammalian toxicity. Therefore, the
thiophene moiety was maintained in this position through round 3 of
SAR antifungal optimization.
Round 2 SAR. Following the alkyl tail in position one, the furan in
position three appeared to have the second largest effect on antifungal
potency from the sarcosine scan. AEC5 derivatives containing a variety
of aromatic heterocycles in this position were synthesized by peptoid
submonomer methods. These included imidazole derivatized com-
pounds γ-1 and γ-3, compound γ-2 containing a thiophene side chain, γ-
4 with an indole in this position, and γ-5 displaying a pyridyl ring
(Fig. 3A). It is important to note that γ-5 required altered synthetic
parameters published by Zuckerman et al. to negate the unwanted al-
kylation reaction at the pyridyl ring.28 This was accomplished using
chloroacetic acid in place of bromoacetic acid and extending the length
of amine coupling to account for the decreased leaving group ability of
chlorine over bromine. Derivatives containing an aromatic phenyl side
chain with no heteroatom (γ-6) and a non-aromatic heterocyclic tet-
rahydrofuran (γ-7) were also synthesized to investigate the role of these
individual properties. The C. neoformans potency and HepG2 toxicity of
these compounds was determined (Fig. 3B). Derivatives γ-1, γ-3, γ-5 all
showed 4- to 5-fold decreases in antifungal potency as well as a 2- to 4-
fold decrease in mammalian cell toxicity. It is interesting to note that
this decrease in potency and toxicity accompanies a decrease in
cLogD7.4, supporting our earlier findings that overall lipophilicity of
short antimicrobial peptoids is linked to mammalian toxicity.22 The
substitution with a non-aromatic heterocycle (γ-7) gave a modest 2-fold
decrease in antifungal potency and a 3-fold decrease in mammalian cell
toxicity. Interestingly, placement of an aromatic phenyl ring with no
Round 3 SAR. The final submonomer to optimize was the amino
cation in position two. Derivatives of γ-2 were synthesized containing
various chemical moieties in position two. These include compounds
with ammonium groups similar to γ-2 attached via fewer methylene
units (β-1 and β-2), or more methylene units (β-3), as well as an argi-
nine mimic (β-4), a trimethylammonium lysine mimic (β-5), and a non-
cationic hydroxyl group (β-6) (Fig. 4A). This last derivative was syn-
thesized and characterized to evaluate the efficacy of a hydrogen
bonding moiety without cationic nature in position two. The MIC of β-6
falls off 4-fold compared to γ-2 while the toxicity against HepG2 cells
becomes more than 2-fold worse (Fig. 4B). These data, combined with
data from AECsar2, highlight the role of the cation in position two in
improving C. neoformans potency, and perhaps more importantly, ne-
gating compound toxicity against mammalian cells. Bolt et al. recently
showed that the chain length between peptoid backbone and amino
cation affects mammalian cytotoxicity and antibacterial activity, al-
though the nature of this relationship varied between organisms.29
Modifying the side-chain length of γ-2 had little effect on antifungal
activity, with only β-2, possessing the two carbon linker, showing a 2-
fold decrease in potency. However, shortening the side-chain length
was detrimental to mammalian cytotoxicity with β-1 (3 carbon linker)
3