Vibriobactin Antibodies
Journal of Medicinal Chemistry, 2009, Vol. 52, No. 12 3811
H), 6.76 (d, 2 H, J ) 8.8), 6.86 (d, 2 H, J ) 8.8), 6.89 (d, 2 H, J
) 8.4), 7.04 (t, 1 H, J ) 7.8), 7.11 (dd, 1 H, J ) 8.0, 2.0), 7.18 (d,
2 H, J ) 8.8), 7.33-7.36 (m, 5 H); 13C NMR δ 55.32, 55.37, 55.40,
66.81, 71.20, 75.31, 112.97, 113.61, 114.02, 118.16, 123.93, 127.08,
128.19, 128.75, 129.51, 129.73, 130.31, 130.41, 148.43, 152.95,
159.43, 159.62, 159.70, 166.44; HRMS m/z calcd for C31H30NaO7,
537.1889 (M + Na); found, 537.1884.
7.22-7.26 (m, 3 H), 7.4 (d, 2 H, J ) 8.4); HRMS m/z calcd for
C51H77N6O13, 981.5543 (M + H); found, 981.5589. Anal.
(C51H76N6O13) C, H, N.
1,36-Bis[2,3-bis(4-methoxybenzyloxy)benzoyl]-15,22-dioxo-
18,19-dithia-1,5,9,14,23,28,32,36-octaaza-5,9,28,32-tetrakis[(N-
tert-butoxycarbonyl-L-threonyl]hexatriacontane (24). CDI (0.063
g, 0.372 mmol) was added to a solution of 3,3′-dithiopropionic acid
(0.039 g, 0.186 mmol) in CH2Cl2 (2 mL). After the mixture was
stirred for 2 h, a solution of 23 (0.550 g, 0.56 mmol) in CH2Cl2 (5
mL) was added followed by NEt3 (0.025 g, 0.25 mmol). The
solution was stirred for 15 h at room temperature and was diluted
with CH2Cl2 (25 mL). The organic layer was washed with 8%
NaHCO3 (20 mL) and saturated NaCl (20 mL) and concentrated
in vacuo. Flash chromatography, using 8% CH3OH/CHCl3, gener-
ated 0.238 g (60%) of 24 as a pale-brown solid: 1H NMR δ
1.10-1.23 (m, 12 H), 1.25-1.47 (m, 36 H), 1.48-2.00 (m, 16 H),
2.52-2.70 (m, 4 H), 2.80-3.01 (m, 4 H), 3.07-3.55 (m, 24 H),
3.80-3.81(m, 6 H), 3.83 (s, 6 H), 3.95-4.17 (m, 4 H), 4.27-4.62
(m, 4 H), 5.01-5.04 (m, 4 H), 5.07 (2 s, 4 H), 5.42-5.65 (m, 4
H), 6.82-6.86 (m, 4 H), 6.93 (2 d, 4 H, J ) 8.4), 7.12-7.18 (m,
4 H), 7.22-7.27 (m, 6 H), 7.4 (d, 4 H, J ) 8.4); HRMS m/z calcd
for C108H159N12O28S2 2137.0859 (M + H), found 2137.0867. Anal.
(C108H158N12O28S2) C, H, N.
2,3-Bis(4-methoxybenzyloxy)benzoic Acid (20). A solution of
19 (8.60 g, 16.71 mmol) in dioxane (84 mL) and 2 N NaOH (42
mL) was stirred for 24 h at room temperature. The reaction mixture
was concentrated in vacuo. The residue was stirred with H2O (100
mL) and then acidified to pH 2 with 1 N HCl. The white solid was
filtered, washed with hexane, and recrystallized from EtOAc/
hexanes to generate 5.93 g (90%) of 20 as a white crystalline solid,
1
mp 129 °C: H NMR δ 3.8 (s, 3 H), 3.85 (s, 3 H), 5.12 (s, 2 H),
5.20 (s, 2 H), 6.83 (d, 2 H, J ) 8.8), 6.96 (d, 2 H, J ) 9.2), 7.18
(t, 2 H, J ) 8.0), 7.22-7.27 (m, 2 H), 7.41 (d, 2 H, J ) 8.4), 7.73
(dd, 1 H, J ) 1.2, 8.0); 13C NMR δ 55.36, 55.37, 55.44, 55.46,
71.42, 114.26, 119.12, 123.04, 124.37, 125.00, 126.87, 128.02,
129.73, 131.21, 147.17, 151.45, 159.94, 160.44, 165.45; HRMS
m/z calcd for C23H22NaO6, 417.1332 (M + Na); found, 417.1332.
N1-[2,3-Bis(4-methoxybenzyloxy)benzoyl]-N7-[4-(phthalimi-
do)butyl]norspermidine (21). CDI (0.239 g, 1.48 mmol) was added
to a solution of 20 (0.583 g, 1.48 mmol) in CH2Cl2 (2 mL). After
being stirred for 1 h, the solution was cooled to 0 °C and added to
a suspension of 12 (1.0 g, 1.48 mmol) and NEt3 (1.05 g, 10.4 mmol)
in CH2Cl2 (2 mL) at 0 °C. The solution was stirred for 15 h at
room temperature and was diluted with CH2Cl2 (50 mL). The
reaction mixture was washed with 8% NaHCO3 (25 mL) and was
concentrated. Flash chromatography, eluting with 5% concentrated
NH4OH/MeOH, afforded 0.597 g (57%) of 21 as a colorless oil:
1H NMR δ 1.48-1.72 (m, 8 H), 2.52-2.63 (m, 8 H), 3.36 (q, 2 H,
J ) 6.0), 3.69 (t, 2 H, J ) 7.2), 3.80 (s, 3 H), 3.84 (s, 3 H), 4.98
(s, 2 H), 5.07 (s, 2 H), 6.83 (d, 2 H, J ) 8.8), 6.93 (d, 2 H, J )
8.4), 7.13 (d, 2 H, J ) 4.8), 7.23 (m, 3 H), 7.4 (d, 2 H, J ) 8.4),
7.68-7.7 (m, 2 H), 7.81-7.83 (m, 2 H), 8.12 (t, 1 H, J ) 7.2);
HRMS m/z calcd for C41H49N4O7, 709.3596 (M + H); found,
709.3611. Anal. (C41H48N4O7) C, H, N.
1,36-Bis(2,3-dihydroxybenzoyl)-15,22-dioxo-18,19-dithia-
1,5,9,14,23,28,32,36-octaaza-5,9,28,32-tetrakis(L-threonyl)hexatri-
acontane Tetrakis(trifluoroacetate) (25). TFA (25 mL) was added
to a mixture of 24 (1.16 g, 0.547 mmol) and anisole (5 mL) in
CH2Cl2 (25 mL) with ice bath cooling, and the solution was stirred
for 1 h at 0 °C and 1 h at room temperature. After removal of
volatiles in vacuo, the concentrate was subjected to a Sephadex
LH-20 column, eluting with 40% EtOH/toluene to give 0.54 g of
1
25 (60%) as a white solid: H NMR (D2O) δ 1.24-1.30 (m, 12
H), 1.34-1.60 (m, 8 H), 1.74-2.21 (m, 8 H), 2.57-2.66 (m, 4 H),
2.84-2.93 (m, 4 H), 3.0-3.64 (m, 24 H), 4.04-4.20 (m, 4 H),
4.24-4.38 (m, 4 H), 6.80-6.86 (m, 2 H), 7.03-7.07 (m, 2 H),
7.18-7.21 (m, 2 H); HRMS m/z calcd for C56H95N12O16S2,
1255.6425 (M + H, free amine); found, 1255.6417. Anal.
(C64H98F12N12O24S2 ·2.5H2O) C, H, N.
N4,N7-Bis[(N-tert-butoxycarbonyl-L-threonyl]-N1-[2,3-bis(4-
methoxybenzyloxy)benzoyl]-N7-[4-(phthalimido)butyl]norsper-
midine (22). A solution of freshly prepared N-tert-butoxycarbonyl-
L-threonine N-hydroxysuccinimide ester56 (1.12 g, 3.54 mmol) in
DMF (10 mL) was added to a solution of 21 (1.0 g, 1.41 mmol) in
DMF (10 mL). After the mixture was stirred for 72 h at 40 °C, the
solvent was removed under vacuum, and the residue was taken up
in CHCl3 (50 mL). The organic layer was washed with aqueous
5% NaHCO3 (3 × 50 mL), H2O (50 mL), saturated NaCl (50 mL)
and was concentrated in vacuo. Flash chromatography, eluting with
10% EtOH/EtOAc, afforded 0.945 g (60%) of 22 as a white foam:
1H NMR δ 1.14-1.21 (m, 6 H), 1.37-1.49 (m, 18 H), 1.52-1.8
(m, 8 H), 3.10-3.60 (m, 10 H), 3.68-3.74 (m, 2 H), 3.79-3.81
(m, 3 H), 3.84 (s, 3 H), 3.97-4.11 (m, 2 H), 4.32-4.60 (m, 2 H),
5.02 (s, 2 H), 5.07 (s, 2 H), 5.44-5.62 (m, 2 H) 6.82-6.86 (m, 2
H), 6.93 (d, 2 H, J ) 8.4), 7.11-7.13 (m, 2 H), 7.22-7.26 (m, 3
H), 7.39 (d, 2 H, J ) 8.4), 7.69-7.72 (m, 2 H), 7.81-7.85 (m, 2
H), 8.02 (br s, 1 H); HRMS m/z calcd for C59H79N6O15, 1111.5598
(M + H); found, 1111.5650. Anal. (C59H78N6O15) C, H, N.
N4,N8-Bis[(N-tert-butoxycarbonyl-L-threonyl]-N1-[2,3-bis(4-
methoxybenzyloxy)benzoyl]thermospermine (23). Hydrazine hy-
drate (5 mL) was added to a solution of 22 (250 mg, 0.225 mmol)
in EtOH (10 mL), and the reaction mixture was stirred at room
temperature for 16 h. Solid was filtered, and the filtrate was
concentrated under high vacuum. The residue was taken up in 1 N
NaOH (10 mL) and extracted with CHCl3 (3 × 10 mL), and organic
extracts were concentrated. Flash chromatography, eluting with 1%
concentrated NH4OH/MeOH, afforded 198 mg (90%) of 23 as a
1,36-Bis(2,3-dihydroxybenzoyl)-15,22-dioxo-18,19-dithia-
1,5,9,14,23,28,32,36-octaaza-5,9,28,32-tetrakis[[(4S,5R)-2-(2,3-di-
hydroxyphenyl)-4,5-dihydro-5-methyl-4-oxazolyl]carbonyl]hexatri-
acontane (26). Ethyl 2,3-dihydroxybenzimidate34 (0.231 g, 1.27
mmol) was added to a solution of 25 (0.35 g, 0.21 mmol) in
anhydrous EtOH (15 mL). The mixture was heated at reflux under
N2 for 36 h and was concentrated in vacuo. Column chromatography
on Sephadex LH-20, eluting with 15% EtOH/toluene, afforded
0.072 g (20%) of 26 as a gray solid: 1H NMR δ 1.35-1.75 (m, 20
H), 1.8-2.2 (m, 8 H), 2.47-2.59 (m, 4 H), 2.82-2.91 (m, 4 H),
3.02-3.91 (m, 24 H), 4.72-5.0 (m, 4 H), 5.21-5.36 (m, 4 H),
6.58-6.77 (m, 6 H), 6.84-7.02 (m, 6 H), 7.08-7.24 (m, 6 H);
HRMS m/z calcd for C84H103N12O24S2, 1728.6669 (M + H); found,
1728.7344. Anal. (C84H102N12O24S2) C, H, N.
BSA-Cysteine Conjugate (30). Maleimide-activated protein
2866 (2 mg in 100 µL buffer) and cysteine (2 mg in 200 µL of
degassed water) were incubated for 8 h at room temperature. After
incubation, 30 was purified on a dextran desalting column, eluting
with a purification buffer. Fractions (0.5 mL) were collected, and
the OD was measured at 280 nm. Positive fractions were pooled,
and protein concentration was estimated by Coomassie assay.58
Iron Complex of OVA-VIB Protein Conjugate (31). A 1 mL
solution of 4 (1.685 mg/mL) was incubated at pH 7.4 with 1 mM
FeNTA (500 µL) at room temperature. After the mixture was
incubated for 2 h, excess 1 was added and the mixture again
incubated for 2 h. The mixture was subjected to a G-25 Sepharose
column, using 30% DMSO/phosphate buffer as an eluting solvent.
Fractions (0.5 mL) were collected, and the first colored band
(fractions 3-6) was eluted; the OD was checked at 280 nm. Protein-
containing fractions were pooled (4 mL) and subjected to ICP-MS
for estimation of iron content.
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white solid: H NMR δ 1.11-1.22 (m, 6 H), 1.37-1.43 (m, 18
H), 1.58-2.02 (m, 8 H), 2.71 (q, 2 H, J ) 6.0), 2.90-3.60 (m, 10
H), 3.80-3.81 (m, 3 H), 3.84 (s, 3 H), 3.98-4.14 (m, 2 H),
4.30-4.60 (m, 2 H), 5.00-5.08 (m, 4 H), 5.42-5.65 (m, 2 H),
6.82-6.86 (m, 2 H), 6.93 (d, 2 H, J ) 8.4), 7.13-7.19 (m, 2 H),