D. Kumar et al. / Bioorg. Med. Chem. Lett. 19 (2009) 2739–2741
2741
(9.56 l
M) cancer cell line. Removal of 30-cyclopentyl group in com-
under nitrogen atmosphere and stirred the reaction mixture at the same
temperature for 1 h. To this reaction mixture appropriate benzamidoxime 2
(0.8 mmol) was added and stirred at 0 °C for 0.5 h. The reaction mixture was
slowly brought to 30 °C, and stirring continued for another 3 h. Gradually
temperature was raised to 110 °C, and further stirred for 10 h. The reaction
mixture was cooled to 25 °C and poured into ice-cold water (25 mL). Upon
addition of ethylacetate (25 mL) and stirring for 10 min, crystals of
dicyclohexylurea separated out and removed by filtration. Separated aqueous
phase was extracted with ethylacetate (2 ꢁ 20 mL) and the combined organic
phase was washed with brine, dried over anhydrous sodium sulfate.
Ethylacetate was distilled off and the residue thus obtained was purified by
flash column chromatography using ethylacetate–hexane (0–25%) as eluent to
afford pure oxadiazole 3.
pound 3e led to the compound 3l having 30-hydroxy-40-methoxy-
phenyl group at C-3 position, which results in complete loss of
activity. Aryl/Heteroaryl substituents with a polar functionality at
C-5 and 30-cyclopentyloxy-40-methoxyphenyl moiety at C-3 posi-
tion of 1,2,4-oxadiazole core is very important for the activity
and selectivity. The observed structure–activity relationship is
illustrated in Figure 1. So far, molecular targets responsible for
the observed cytotoxicity of this new series of 3,5-disubstituted-
1,2,4-oxadiazoles 3 have not been identified, and a reasonable
explanation of the substitutions described above is not yet possi-
ble. Among synthesized 3,5-disubstituted-1,2,4-oxadiazoles, com-
pounds 3f, 3g, 3n, and 3p were most potent and selective in the
in vitro assay.
12. Data for selected compounds 3a: 1H NMR (CDCl3, 400 MHz): dH = 8.26–8.23 (m,
2H), 8.18–8.16 (m, 2H), 7.54–7.50 (m, 3H), 7.27–7.23 (m, 2H). Compound 3b:
1H NMR (CDCl3, 400 MHz): dH = 8.89 (dd, 2H, J = 4.48, 1.64 Hz), 8.19–8.17 (m,
2H), 8.07 (dd, 2H, J = 4.44, 1.68 Hz), 7.56–7.52 (m, 3H). Compound 3c: 1H NMR
(CDCl3, 400 MHz): dH = 8.88 (d, 2H, J = 5.0 Hz), 8.06 (dd, 2H, J = 4.56, 1.56 Hz),
7.72 (dd, 1H, J = 8.36, 2.0 Hz), 7.67 (d, 1H, J = 1.96 Hz), 7.46 (d, 2H, J = 8.76 Hz),
7.41–7.32 (m, 3H), 7.00 (d, 1H, J = 8.4 Hz), 5.25 (s, 2H), 4.00 (s, 3H). Compound
3d: 1H NMR (CDCl3, 400 MHz): dH = 8.22 (dd, 2H, J = 5.20, 0.9 Hz), 7.76 (dd, 1H,
J = 6.24, 1.44 Hz), 7.67 (d, 1H, J = 1.44 Hz), 7.61–7.54 (m, 3H), 6.97 (d, 1H,
J = 6.3 Hz), 4.94–4.91 (m, 1H), 3.92 (s, 3H), 2.17–1.84 (m, 6H), 1.67–1.62 (m,
2H). Calcd m/z for C20H20N2O3: 336.1, found: 337.2 (M+H)+, 359.3 (M+Na).
Compound 3e: 1H NMR (CDCl3, 400 MHz): dH = 8.25–8.21 (m, 2H), 7.74 (dd, 1H,
J = 8.36, 2.04 Hz), 7.66 (d, 1H, J = 1.92 Hz), 7.27–7.22 (m, 2H), 6.97 (d, 1H,
J = 8.4 Hz), 4.93–4.90 (m, 1H), 3.92 (s, 3H), 2.04–1.84 (m, 6H), 1.67–1.62 (m,
2H). Calcd m/z for C20H19FN2O3: 354.1, found: 355.2 (M+H)+, 377.2 (M+Na).
Compound 3f: 1H NMR (CDCl3, 400 MHz): dH = 8.16 (d, 2H, J = 8.64 Hz), 7.74
(dd, 1H, J = 8.40, 1.92 Hz), 7.56 (d, 1H, J = 1.92 Hz), 7.53 (d, 2H, J = 8.64 Hz), 6.97
(d, 1H, J = 8.40 Hz), 4.93–4.90 (m, 1H), 3.92 (s, 3H), 2.06–1.84 (m, 6H), 1.67–
1.60 (m, 2H). Compound 3g: 1H NMR (CDCl3, 400 MHz): dH = 8.11 (d, 2H,
J = 8.80 Hz), 7.74 (dd, 1H, J = 8.28, 1.92 Hz), 7.66 (d, 1H, J = 1.92 Hz), 7.01–6.95
(m, 3H), 6.50 (s, 1H (OH)), 4.93–4.88 (m, 1H), 3.91 (s, 3H), 2.04–1.86 (m, 6H),
1.65–1.56 (m, 2H). Compound 3h: 1H NMR (CDCl3, 400 MHz): dH = 8.88 (dd,
2H, J = 4.48, 1.68 Hz), 8.06 (dd, 2H, J = 4.08, 1.68 Hz), 7.76 (dd, 1H, J = 8.40,
2.04 Hz), 7.66 (d, 1H, J = 1.96 Hz), 6.98 (d, 1H, J = 8.40 Hz), 4.94–4.90 (m, 1H),
3.93 (s, 3H), 2.06–1.85 (m, 6H), 1.68–1.61 (m, 2H). Calculate m/z for
C19H19N3O3: 337.1, found: 338.2 (M + H)+, 360.2 (M+Na). Compound 3i: 1H
NMR (CDCl3, 400 MHz): dH = 9.45 (dd, 1H, J = 2.08, 0.56 Hz), 8.84 (dd, 1H,
J = 4.88, 1.68 Hz), 8.48 (dt, 1H, J = 8.04, 2.0 Hz), 7.76 (dd, 1H, J = 8.4, 2.0 Hz),
7.67 (d, 1H, J = 1.92 Hz), 7.52 (ddd, 1H, J = 8, 4.8, 0.6 Hz), 6.98 (d, 1H,
J = 8.44 Hz), 4.93–4.92 (m, 1H), 3.93 (s, 3H), 2.04–1.85 (m, 6H), 1.71–1.62 (m,
2H), Calcd m/z for C19H19N3O3: 337.1, found: 338.2 (M+H)+, 360.2 (M+Na).
Compound 3j: 1H NMR (CDCl3, 400 MHz): dH = 8.22 (s, 1H), 7.70 (d, 1H,
J = 8.84 Hz), 7.64 (dd, 1H, J = 8.32, 1.92 Hz), 7.57 (d, 1H, J = 1.96 Hz), 7.37 (d, 1H,
J = 8.08 Hz), 7.24–7.13 (m, 3H), 6.91 (d, 1H, J = 8.44 Hz), 4.87–4.84 (m, 1H), 4.43
(s, 2H), 3.88 (s, 3H), 2.04–1.80 (m, 6H), 1.67–1.59 (m, 2H). Calcd m/z for
C23H23N3O3: 389.2, found: 390.3 (M+H)+, 412.3 (M+Na). Compound 3k: 1H
NMR (CDCl3, 400 MHz): dH = 7.65 (dd, 1H, J = 8.40, 2.04 Hz), 7.57 (d, 1H,
J = 1.96 Hz), 6.94 (d, 1H, J = 8.44 Hz), 4.89–4.86 (m, 1H), 4.1 (s, 2H), 3.91 (s, 3H),
2.35 (s, 3H), 2.17–1.80 (m, 6H), 1.64–1.58(m, 2H). Calcd m/z for C17H20N2O4:
316.1, found: 317.3 (M+H)+, 339.3 (M+Na). Compound 3l: 1H NMR (CDCl3,
400 MHz): dH = 8.24–8.20 (m, 2H), 7.73–7.69 (m, 2H), 7.23 (d, 2H, J = 4.6 Hz),
6.96 (d, 1H, J = 8.20 Hz), 5.72 (s, 1H (OH)), 3.97 (s, 3H). Compound 3n: 1H NMR
(CDCl3, 400 MHz): dH = 7.66 (dd, 1H, J = 8.36, 2.0 Hz), 7.57 (d, 1H, J = 1.96 Hz),
6.93 (d, 1H, J = 8.44 Hz), 4.89–4.87 (m, 1H), 4.56–4.52 (m, 1H), 3.90 (s, 3H),
3.24–3.20 (m, 1H), 3.12–3.08 (m, 1H), 2.33–2.29 (m, 1H), 2.17–1.80 (m, 8H),
1.64–1.58(m, 2H). Calcd m/z for C18H23N3O3: 329.2, found: 330.3 (M+H)+, 352.3
(M+Na). Compound 3o: 1H NMR (CDCl3, 200 MHz): dH = 7.63 (dd, 1H, J = 8.00,
2.00 Hz), 7.55 (d, 1H, J = 2.00 Hz), 6.91(d, 1H, J = 8.00 Hz), 4.89–4.78 (m, 1H),
4.16–4.09 (m, 2H), 3.89 (s, 3H), 3.19–2.87 (m, 2H), 2.14–1.85 (m, 10H), 1.70–
1.55 (m, 3H), 1.46 (s, 9H). Compound 3p: 1H NMR (CDCl3, 200 MHz): dH = 7.63
(dd, 1H, J = 8.00, 2.00 Hz), 7.54 (d, 1H, J = 2.00 Hz), 6.92 (d, 1H, J = 8.00 Hz),
4.86–4.78 (m, 1H), 3.88 (s, 3H), 3.40–2.87 (m, 9H), 2.16–1.61 (m, 8H), Calcd m/z
for C19H25N3O3: 343.2, found: 344.2 (M+H)+.
In summary, our SAR study shows that the 3,5-disubstituted-
1,2,4-oxadiazoles decrease cell viability in various cancer cell lines
with IC50 values ranging from 10 nM to >1 mM. While 3n was
highly specific and potent for LnCaP cells, a few others (3f, 3h, 3j,
and 3k) exhibited specificity towards pancreatic cell line. The sub-
stituents at C-3 and C-5 positions of 1,2,4-oxadiazole ring were
shown to be vital for potency, suggesting specific interactions of
these groups with biological targets. Extensive exploration of
structure–activity relationship of this novel 1,2,4-oxadiazole scaf-
fold and its biological target studies are underway.
Acknowledgment
The authors wish to thank the University Grants Commission,
New Delhi (Project F. No. 32-216/2006) for financial support.
References and notes
1. Vu, C. B.; Corpuz, E. G.; Merry, T. J.; Pradeepan, S. G.; Bartlett, C.; Bohacek, R. S.;
Botfield, M. C.; Eyermann, C. J.; lynch, B. A.; MacNeil, I. A.; Ram, M. K.; Van
Schravendijk, M. R.; Violette, S.; Sawyer, T. K. J. Med. Chem. 1999, 42, 4088.
2. Orlek, B. S.; Blaney, F. E.; Brown, F.; Clark, M. S.; Hadley, M. S.; Hatcher, J.; Riley, G.
J.; Rosenberg, H. E.; Wadsworth, H. J.; Wyman, P. J. Med. Chem. 1991, 34, 2726.
3. Clitherow, J. W.; Beswick, P.; Irving, W. J.; Scopes, D. I. C.; Barnes, J. C.; Clapham,
J.; Brown, J. D.; Evans, D. J.; Hayes, A. G. Bioorg. Med. Chem. Lett. 1996, 6, 833.
4. Nicolaides, D. N.; Fylaktakidou, K. C.; Litinas, K. E.; Hadjipavlou-Litina, D. Eur. J.
Med. Chem. 1998, 33, 715.
5. (a) Matsumoto, J.; Takahashi, T.; Agata, M.; Toyofuku, H.; Sasada, N. Jpn. J.
Pharmacol. 1994, 65, 51; (b) Zhang, H. Z.; Kasibhatla, S.; Kuemmerle, J.;
Kemnitzer, W.; Ollis-Mason, K.; Qiu, L.; Crogan-Grundy, C.; Tseng, B.; Drewe, J.;
Cai, S. X. J. Med. Chem. 2005, 48, 5215.
6. Chimirri, A.; Grasso, S.; Montforte, A.-M.; Rao, A.; Zappala, M. Farmaco 1996, 51,
125.
7. Luthman, K.; Borg, S.; Hacksell, U. Methods Mol. Med. 1999, 23, 1.
8. Borg, S.; Vollinga, R. C.; Labarre, M.; Payza, K.; Terenius, L.; Luthman, K. J. Med.
Chem. 1999, 42, 4331.
9. Borg, S.; Estenne-Bouhtou, G.; Luthman, K.; Csoregh, I.; Hesselink, W.; Hacksell,
U. J. Org. Chem. 1995, 60, 3112.
10. Shaw, S. J. Mini-Rev. Med. Chem. 2008, 8, 276.
11. (a) Synthesis of amidoxime 2: To
a mixture of appropriate benzonitrile
(10 mmol) and hydroxyl-amine hydrochloride (20 mmol) in 50 mL of ethanol
was added dropwise aqueous solution of sodium hydroxide (20 mmol, 10 mL)
while maintaining temperature at 0 °C. The resulting mixture was allowed to
reflux with stiring for 18 h. Ethanol was distilled off under reduced pressure
and the crude product was taken into 50 mL of water. The pH (ꢀ2) of the
solution was adjusted with 1N HCl and the aqueous phase was washed with
ethylacetate (2 ꢁ 25 mL). Upon cooling (0 °C) and neutralization with sodium
carbonate gave off white precipitate which was filtered, washed and air dried
at 60 °C to afford pure amidoxime 2.; b Synthesis of 3,5-disubstituted-1,2,4-
oxadiazole 3: A solution of appropriate carboxylic acid (0.8 mmol) in dry DMF
(1 mL) was cooled to 0 °C and added dicyclohexylcarbodiimide (1.2 mmol)
13. Cells were cultured in RPMI-1640 media supplemented with 10% heat-
inactivated foetal bovine serum and 1% penicillin/streptomycin. For MTT
assay, cells were seeded in 96 well plates at a density of 4.0 ꢁ 103 cells per
well for 12 h. Cells were incubated with various concentrations of the
compounds ranging from 10 nM–1 mM. After 24 h, MTT (3-(4,5-
dimethyldiazol-2-yl)-2,5-diphenyltetrazoliumbromide) was added to the
final concentration of 0.5 mg/ml and incubated for 30 min. The cells were
washed twice with PBS and lysed in dimethylsulfoxide, and the absorbance
was measured at 570 nm.