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T. Huber et al. / Bioorg. Med. Chem. Lett. 19 (2009) 4427–4431
sion to use DCM together with tert-butanol as protic solvent
(Scheme 4). The reaction time was quite long as it typically took
more than 36 h for the conversion to compound 16. Finally deriv-
ative 16 was stirred in a mixture of TFA/TIPS/water (95:2.5:2.5) for
12 h in parallel while monitoring deprotection by HPLC–MS. Final-
ly, each mixture was purified and the different isomers separated
by standard semi-preparative RP-HPLC. It was possible to separate
all of the four diastereomers which were named after their chrono-
logical appearance from the HPLC-column as follows: II-P1, II-P2,
II-P3 and II-P4. Overall II P1-4 was isolated in equimolar ratio with
a yield of 60% over four steps and HPLC purification relative to the
loading of the resin.
The inhibitory effects of these macrocyclic phosphino peptides
against BACE1 were examined by an assay in which the ectodo-
main of BACE1 secreted from HEK393 cells was incubated with la-
beled substrate peptide and test compound as described in the
Supplementary data. The results and analytical data are shown in
Table 1. Two of the compounds have activities of 47 nM for II-P1
and 320 nM for II-P2. The fraction containing II-P3 has an activity
of 522 nM whereas II-P4 exhibited 808 nM. With this result it
seems most likely that the most active macrocycle II-P1 consti-
tutes the chirality that belongs to the side chain orientation in nat-
ural amino acids. The most active compound II-P1 was chosen
together with the linear analog I to study enhancement of stability
in serum achieved by cyclization.
It is well known that some major problems limit the use of
peptides as effective drugs, among others are their often bad cel-
lular activity, serum stability or brain penetration (across blood
brain barrier). Particularly their fast degradation in vivo by pro-
teases leads to their inherent instability. In order to protect bio-
logically active peptides from in vivo decomposition there are
different approaches, for example, alteration of the peptide bond,
conjugation to carrier molecules, cyclization, N-methylation and
the incorporation of non-proteinogenic amino acids.40–42 For
in vitro enzymatic stability studies mainly isolated enzymes such
as carboxypeptidase A, aminopeptidase M, proteinase A, carboxy-
lic inhibitor II-P1 was more stable and degraded with a half-life
of about 43.9 min. While inhibitor I is totally degraded and not
detectable after approximately 120 min, cyclic inhibitor II-P1 is
still detectable after approximately 160 min. After this time
about 20% of the inhibitor is still measurable by UV detection.
In total the stability (half life) increased by a factor of approxi-
mately three.
This study reports the synthesis of potent macrocyclic PDP iso-
stere inhibitors with enhanced stability in human serum compared
to their linear analogs. The synthesis was accomplished by SPPS of
key fragments. A new useful protected PDP isostere building block
for macrocyclization via metathesis bearing a terminal alkene
functionality for SPPS was efficiently synthesized. After assembly
of the precursor on solid support the RCM, hydrogenation and
deprotection reactions were performed in high yield to obtain
the desired macrocycle.
The data obtained from human serum incubation showed
enhancement of stability against degradation in human serum by
a factor of three compared to the linear analog. The remaining
instability is possible due to the still very peptidic C-terminal part
of the inhibitor and further development by replacing this part
showed led to increased stabilities. Future investigations and opti-
mization of pharmacokinetics together with known prodrug con-
cepts, such as phosphinic acid esters (Monopril),43 could led to
macrocyclic PDP isostere inhibitors with improved pharmaceutical
properties and thereby making them promising candidates for fur-
ther drug development.
Acknowledgments
We thank B. Cordes for ESI-MS analysis and M. Wolff for tech-
nical support.
Supplementary data
Supplementary data (detailed protocols of the peptide digestion
in human serum, molecular docking, SPPS, biological evaluation,
experimental data of synthesized compounds) associated with this
article can be found, in the online version, at doi:10.1016/
peptidase Y,
a-chymotrypsin or complex biological fluids, such
as human serum and urine, human plasma or rat liver lysosomes
are in use. The present investigation used fresh human serum
preparations. Therefore compounds I and II-P1 were treated
with fresh human serum of a single donor and the amount of in-
tact ligand was determined by quantitative HPLC and HPLC–MS
analysis over the time (Fig. 3). The linear inhibitor I is rapidly
degraded with a half-life of about 14.8 min. As assumed, the cyc-
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Figure 3. Stability in human serum of I (blue) and II-P1 (red).