5762 Journal of Medicinal Chemistry, 2009, Vol. 52, No. 18
Herfindal et al.
Determination of ability of MC, Nod and their analogues to
bind to the active site of protein phosphatase 2A was done with a
MC-YR-[125I] displacement assay as described.17,25 Protein
phosphatase 2A (PP2A) was obtained from rabbit muscle
following the procedure of ref 26.
In Silico Predications of Physiochemical Properties. Estima-
tions of logD, pI, and ionization conditions were done with
the Calculator Plug-in in Marvin version 5.0.1 (2008) for Apple
drawn in 2D mode and converted to 3D structures with the fine
build clean 3D mode in Marvin. Standard ionic condition (0.1 M
Cl- and 0.1 M Naþ/Kþ) was used for estimation of logD at pI
and physiological pH (7.4). pKa was estimated in macro mode
under the following conditions: min basic pK1, -10; max acidic
pKa, 20; temperature 310 K.
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(project MAST3-CT97-0156), the Norwegian Cancer Society,
and the Norwegian Research Council. Nina Lied Larsen
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